No definition available.
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
519870 |
1. Apply sex-specific ruleNone |
519870 |
2. Check conditions
|
9738 |
3. Check pre-conditions, main-only, mode, registry filtersNone 0 out of 7 registries used, show all original rules. |
0 |
4. Check minimum number of eventsNone |
0 |
5. Include endpoints |
4613 |
6. Filter based on genotype QC (FinnGen only) |
4417 |
Control definitions (FinnGen only)
Controls for this endpoint are individuals that are not cases.
Extra metadata
- First used in FinnGen datafreeze
- DF7
Similar endpoints
↥List of similar endpoints to
Graves disease, strict definition
based on the number of shared cases.
Similar with more cases:
- Carbimazole or st.post thyroidectomy, condition for graves disease
- Thyrotoxicosis
- Disorders of thyroid, IBD co-morbidities
- Disorders of the thyroid gland
- Used for control exclusion in common control thyroid runs
Similar with less cases:
None
Case counts by codes
↥FinnGen case counts by registry codes:
No data for upset plot.
No data for upset table.
Summary Statistics
↥-FinRegistry-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | |||
| Whole population | 23064 | 18836 | 4057 |
| Only index persons | 22484 | 18513 | 3971 |
| Unadjusted period prevalence (%) | |||
| Whole population | 0.46 | 0.54 | 0.11 |
| Only index persons | 0.59 | 0.68 | 0.15 |
| Median age at first event (years) | |||
| Whole population | 49.31 | 49.21 | 50.36 |
| Only index persons | 49.26 | 49.12 | 49.95 |
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 4417 | 3732 | 685 |
| Unadjusted period prevalence (%) | 1.17 | 1.32 | 0.31 |
| Median age at first event (years) | 50.45 | 49.67 | 54.71 |
-FinRegistry-
Age distribution of first events
-FinnGen-
Age distribution of first events
-FinRegistry-
Year distribution of first events
-FinnGen-
Year distribution of first events
-FinRegistry-
Cumulative Incidence Function
-FinnGen-
Cumulative Incidence Function
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 4613
- Matched controls
- 46130
TimeCodeWAS
↥TODO / Current known limitations:
- Only showing the top 500 codes, because showing all (sometimes 20k) makes the page too slow.
- Legend / how to read the glyphs.
- Proper column names.
- Show details (e.g. Fisher or Chi-square test, N cases and N controls) when clicking on a row.
- Explanation on the underlying data / how the TimeCodeWAS is done (e.g. matched cases / controls, eligibility).
- Download CSV not working.
- No filters and sorters.
- Limited amount of endpoints with TimeCodeWAS data.
- Cross-links to Risteys lab test pages for lab test codes.
H06.2 (45542958)
H06.2*E05.0 (2000503914)
SMOKING-2-3-5 (2002330114)
E06.3 (45557105)
2420A (2000402259)
H06.2*E05.9 (2000502261)
BAA60 (2001300753)
CA1BG (2001300865)
CAC30 (2001300892)
CAC44 (2001300895)
XX7CT (2001311149)
106 (2001600106)
SMOKING-2-2-0 (2002330110)
SMOKING-2-0-0 (2002330112)
SMOKING-2-3-0 (2002330113)
SMOKING-1-1-0 (2002330116)
H03BA02 (21602762)
50373000 (4177340)
60621009 (4245997)
E05 (45533007)
R94.6 (45563335)
E05.5 (45566720)
E89.2 (45586178)
E05.0 (45600628)
E06.2 (45605391)
E03.89 (2000501408)
E83.51 (2000501538)
E89.00 (2000501553)
XCD10 (2001300413)
BA1AE (2001300735)
BAA50 (2001300752)
CA1AD (2001300861)
CA1CG (2001300869)
CBK00 (2001300991)
FM1EE (2001303307)
WX704 (2001310820)
ZX012 (2001311468)
ZX120 (2001311495)
ZY020 (2001311600)
A04 (2002000145)
T85 (2002001127)
T86 (2002001128)
H03BB01 (21602765)
5385-0 (3017044)
14928-6 (3026989)
37 (38004477)
8260/3-C73.9 (44503609)
H50.2 (45533348)
H50.0 (45552716)
E05.1 (45557104)
E03.2 (45566718)
H50.6 (45567092)
E21.0 (45571667)
O80.0 (45577661)
Z01.8 (45581003)
E03 (45581337)
K90.0 (45586745)
E05.2 (45600629)
E06.1 (45600632)
D50.9 (45605373)
R00.0 (45606790)
E05.9 (45586131)
46 (38004485)
C07AA05 (21601670)
8099-4 (3027238)
14920-3 (3008486)
11 (38004456)
3016-3 (3009201)
104 (2001600104)
E05.80 (2000501412)
O99.2 (45534321)
EP1AE (2001302284)
OMOP5117446 (33004)
E89.0 (45552421)
33718-8 (3043109)
OP (9202)
OMOP4822462 (581458)
E89.01 (2000501554)
2753-2 (3018418)
I48 (45596206)
1995-0 (3021347)
751-8 (3013650)
E04.2 (45576425)
19072-8 (3016431)
Z03.80 (2000503756)
2 (38004447)
E04.9 (45537948)
BA3AT (2001300769)
55429-5 (40758558)
C07AB07 (21601689)
OMOP4822458 (581477)
14866-8 (3010566)
H03AA01 (21602754)
34534-8 (3044889)
6768-6 (3035995)
8098-6 (3025547)
2731-8 (3000067)
207 (2001600205)
70217-5 (42868691)
K04 (2002000547)
290 (2001600222)
26464-8 (3010813)
28539-5 (3035941)
26453-1 (3026361)
26515-7 (3007461)
30428-7 (3024731)
20570-8 (3009542)
718-7 (3000963)
1742-6 (3006923)
18 (38004463)
2000-8 (3015377)
68438-1 (40771025)
22 (8756)
6598-7 (3019800)
ER (9203)
30385-9 (3002385)
351 (2001600312)
58410-2 (40761511)
A11CC03 (21600818)
TFP20 (2001303224)
17433-4 (3019225)
11524-6 (3013512)
21 (8717)
C73.91 (2000501197)
4 (38004449)
Z2221 (2001311556)
N07BA03 (21604819)
I10 (45591453)
14749-6 (3013826)
715-3 (3021589)
E05.89 (2000501414)
R00.2 (45558446)
13875-0 (3036185)
H02AB06 (21602734)
A07EA01 (21600653)
28540-3 (3003338)
H53.2 (45576792)
24348-5 (3001019)
A12BA01 (21600877)
13874-3 (3035062)
OMOP4822461 (32036)
4537-7 (3013707)
93 (38004510)
ZXE20 (2001311408)
106 (44777669)
R63.4 (45568144)
E11.9 (45561952)
2951-2 (3019550)
I48.0 (45581776)
2823-3 (3023103)
26499-4 (3017732)
I25.1 (45596196)
A11CC02 (21600817)
J38.0 (45543265)
A07EA03 (21600655)
H02AB07 (21602735)
A12AA20 (21600872)
47598-8 (3048816)
94494-2 (36660697)
1778-0 (3020013)
2458-8 (3007164)
26449-9 (3013115)
3013-0 (3036535)
62238-1 (40764999)
K80 (2002000607)
1920-8 (3013721)
XCK00 (2001301380)
890-4 (3001079)
R25.1 (45539327)
30180-4 (3022096)
26478-8 (3002030)
26450-7 (3006504)
26485-3 (3019069)
26511-6 (3018010)
XW1AT (2001311084)
ZXD10 (2001311387)
251B00000X (38004193)
26474-7 (3019198)
14682-9 (3020564)
SPAT1097 (2001700198)
E10.9 (45581351)
31017-7 (3019050)
69738-3 (42870588)
WX408 (2001310808)
S01KA02 (21605115)
26484-6 (3001604)
26444-0 (3006315)
C07AB02 (21601684)
ERIP (262)
ZXA10 (2001311348)
1988-5 (3020460)
14675-3 (3036481)
XCW99 (2001301491)
14631-6 (3006140)
207WX0109X (903241)
H04.10 (2000502254)
16182-8 (3021952)
FB1BD (2001302407)
1777-2 (3001467)
1751-7 (3024561)
19926-5 (3011505)
19870-5 (3020158)
20150-9 (3024653)
4679-7 (3027945)
S01XA02 (21605128)
1798-8 (3016771)
19875-4 (3001668)
20155-8 (3023550)
69970-2 (42868459)
69982-7 (42868471)
69983-5 (42868472)
33762-6 (3029187)
2324-2 (3026910)
WZC00 (2001310885)
34714-6 (3032080)
Z50.5 (45547321)
I50.9 (45576879)
WX404 (2001310807)
J45.9 (45562456)
ZXE10 (2001311401)
TPH04 (2001309597)
30248-9 (3015399)
B01AF01 (43534761)
R49.08 (2000503601)
D44.0 (45605366)
WX402 (2001310806)
Z01.0 (45566391)
G47.3 (45562094)
29265-6 (3020059)
6 (38004451)
14731-4 (3019309)
66121-5 (40768804)
B01AF02 (43534762)
57782-5 (40760892)
13 (38004458)
E89.09 (2000501555)
60517-0 (40763571)
R53 (45553741)
N05CF01 (21604654)
GD1AA (2001303617)
3034-6 (3004789)
R06.0 (45558449)
29760-6 (3005772)
IP (9201)
CEC00 (2001301083)
14798-3 (3022948)
58435-9 (40761536)
H05.2 (45571878)
48065-7 (3051714)
ZXE00 (2001311394)
77397-8 (46236098)
I49.9 (45581778)
16 (38004461)
64 (38004489)
R02 (2002000883)
NK6QA (2001308500)
5894-1 (3033658)
72160-5 (43054903)
CS494 (2001301478)
WZC30 (2001310891)
A02BC02 (21600097)
OMOP5556618 (722455)
R60.9 (45568143)
2601-3 (3012095)
34531-4 (3044640)
H02.5 (45581540)
117617002 (4035726)
2276-4 (3001122)
10839-9 (3021337)
WF099 (2001310707)
14771-0 (3018251)
Z71.2 (45552100)
4548-4 (3004410)
34548-8 (3045783)
77 (38004496)
UDQ12 (2001301827)
882-1 (3003694)
A02AC01 (21600065)
A12AA04 (21600863)
2157-6 (3007220)
14637-3 (3010838)
14879-1 (3003458)
14732-2 (3021960)
Z3226 (2001311560)
WX110 (2001310767)
S01BA02 (21603619)
S01CB03 (21603666)
N02AJ06 (1123647)
R02AX02 (1588667)
M01AE01 (21603967)
N02BE01 (21604344)
J01DB01 (21602870)
J01FA10 (21602978)
14646-4 (3023602)
14647-2 (3019900)
22748-8 (3001308)
47210-0 (3048773)
H50.52 (2000502357)
E03.9 (45537945)
90 (38004507)
WX320 (2001310799)
SPAT1380 (2001700480)
Z37 (45581024)
EB1AA (2001301903)
M01AB05 (21603945)
LabWAS
↥Mortality – FinRegistry
↥Association
Association between endpoint E4_GRAVES_STRICT and mortality.
Females
| Parameter | HR [95% CI] | p-value |
|---|---|---|
| E4_GRAVES_STRICT | 1.07 [0.94, 1.22] | 0.294 |
| Birth year | 0.992 [0.98, 1.0] | 0.082 |
During the follow-up period (1.1.1998 — 31.12.2019), 1142 out of 16342 females with E4_GRAVES_STRICT died.
Males
| Parameter | HR [95% CI] | p-value |
|---|---|---|
| E4_GRAVES_STRICT | 1.036 [0.89, 1.21] | 0.654 |
| Birth year | 0.991 [0.98, 1.0] | 0.053 |
During the follow-up period (1.1.1998 — 31.12.2019), 345 out of 3489 males with E4_GRAVES_STRICT died.
Mortality risk
Mortality risk for people of age
years, who have E4_GRAVES_STRICT.| N-year risk | Females | Males |
|---|---|---|
| 1 | 0.062% | 0.176% |
| 5 | 0.599% | 1.156% |
| 10 | 1.414% | 3.262% |
| 15 | 2.705% | 6.508% |
| 20 | 4.747% | 11.059% |
Relationships between endpoints
↥Index endpoint: E4_GRAVES_STRICT – Graves disease, strict definition
GWS hits: 24