No definition available.
Other congenital malformations of tongue, mouth and pharynx, including avohilmo
Q17_OTHER_CONGEN_MALFO_TONGUE_MOUTH_PHARYNX_WIDE
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
557745 |
1. Apply sex-specific ruleNone |
557745 |
2. Check conditionsNone |
557745 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
3 out of 7 registries used, show all original rules. |
793 |
4. Check minimum number of eventsNone |
793 |
5. Include endpointsNone |
793 |
6. Filter based on genotype QC (FinnGen only) |
702 |
Control definitions (FinnGen only)
- Control exclude
- Q17_OTHER_CONGEN_MALFO_DIGES_SYSTEM1
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF13
- Parent code in ICD-10
- Q3[8-9]|Q4[0-5]
- Name in latin
- Aliae malformationes congenitae linguae, oris et pharyngis
Similar endpoints
↥List of similar endpoints to
Other congenital malformations of tongue, mouth and pharynx, including avohilmo
based on the number of shared cases.
Similar with more cases:
- Other congenital malformations of the digestive system, including avohilmo
- Congenital malformations, deformations and chromosomal abnormalities, including avohilmo
Similar with less cases:
None
Case counts by codes
↥Summary Statistics
↥-FinRegistry-
This endpoint is excluded (different definition than used in FinnGen).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 702 | 385 | 317 |
| Unadjusted period prevalence (%) | 0.14 | 0.14 | 0.15 |
| Median age at first event (years) | 11.24 | 15.29 | 6.33 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 748
- Matched controls
- 7434
LabWAS
↥Mortality – FinRegistry
↥This endpoint is excluded (different definition than used in FinnGen).
Relationships between endpoints
↥Index endpoint: Q17_OTHER_CONGEN_MALFO_TONGUE_MOUTH_PHARYNX_WIDE – Other congenital malformations of tongue, mouth and pharynx, including avohilmo
GWS hits: 3
This endpoint is excluded (different definition than used in FinnGen).