No definition available.
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
519870 |
1. Apply sex-specific ruleonly females |
293145 |
2. Check conditionsNone |
293145 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
2 out of 7 registries used, show all original rules. |
1141 |
4. Check minimum number of eventsNone |
1141 |
5. Include endpointsNone |
1141 |
6. Filter based on genotype QC (FinnGen only) |
1090 |
Control definitions (FinnGen only)
- Control exclude
- N14_FEMALEGENINF
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF2
- Parent code in ICD-10
- N75
- Name in latin
- Abscessus glandulae vestibularis majoris (Bartholini)
Similar endpoints
↥List of similar endpoints to
Abscess of Bartholin gland
based on the number of shared cases.
Similar with more cases:
- Inflammatory diseases of female pelvic organs
- Genitourinary diseases
- Any event in hilmo or specialist outpatient
Similar with less cases:
None
Case counts by codes
↥Summary Statistics
↥-FinRegistry-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | |||
| Whole population | 7335 | 7335 | - |
| Only index persons | 7152 | 7152 | - |
| Unadjusted period prevalence (%) | |||
| Whole population | 0.21 | 0.21 | - |
| Only index persons | 0.26 | 0.26 | - |
| Median age at first event (years) | |||
| Whole population | - | 37.16 | - |
| Only index persons | - | 37.02 | - |
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 1090 | 1090 | - |
| Unadjusted period prevalence (%) | 0.39 | 0.39 | - |
| Median age at first event (years) | 38.12 | 38.12 | - |
-FinRegistry-
Age distribution of first events
-FinnGen-
Age distribution of first events
-FinRegistry-
Year distribution of first events
-FinnGen-
Year distribution of first events
-FinRegistry-
Cumulative Incidence Function
-FinnGen-
Cumulative Incidence Function
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 1141
- Matched controls
- 11410
TimeCodeWAS
↥TODO / Current known limitations:
- Only showing the top 500 codes, because showing all (sometimes 20k) makes the page too slow.
- Legend / how to read the glyphs.
- Proper column names.
- Show details (e.g. Fisher or Chi-square test, N cases and N controls) when clicking on a row.
- Explanation on the underlying data / how the TimeCodeWAS is done (e.g. matched cases / controls, eligibility).
- Download CSV not working.
- No filters and sorters.
- Limited amount of endpoints with TimeCodeWAS data.
- Cross-links to Risteys lab test pages for lab test codes.
LFF00 (2001306774)
LFF96 (2001306776)
LFF10 (2001306775)
SMOKING-2-3-5 (2002330114)
N75.0 (45539064)
N76.4 (45558169)
N75.1 (45587255)
8473 (2000101367)
6163A (2000404817)
LFA00 (2001306755)
SMOKING-1-1-0 (2002330116)
50373000 (4177340)
60621009 (4245997)
N75.8 (45553453)
N75.9 (45592149)
TLW99 (2001306821)
WX408 (2001310808)
SMOKING-2-3-0 (2002330113)
WX404 (2001310807)
WX702 (2001310818)
ZXD05 (2001311386)
ZXD10 (2001311387)
ZXE00 (2001311394)
N02AX02 (21604298)
P01AB01 (21604857)
21416-3 (3003510)
882-1 (3003694)
21613-5 (3006093)
24111-7 (3011371)
14749-6 (3013826)
600-7 (3023368)
6357-8 (3024950)
43409-2 (3042936)
34531-4 (3044640)
OMOP5117446 (33004)
Z09.0 (45576131)
L02.9 (45591620)
77397-8 (46236098)
16 (38004461)
J01DB01 (21602870)
J01FF01 (21602985)
J01MA02 (21603009)
R02AX02 (1588667)
M01AE01 (21603967)
LC2BE (2001306544)
Z2221 (2001311556)
1988-5 (3020460)
51480-2 (3031040)
OMOP4822462 (581458)
LX1AE (2001306815)
24357-6 (3037467)
58410-2 (40761511)
OP (9202)
ER (9203)
N02AJ06 (1123647)
N02BE01 (21604344)
30385-9 (3002385)
26464-8 (3010813)
26515-7 (3007461)
20570-8 (3009542)
30428-7 (3024731)
26453-1 (3026361)
28539-5 (3035941)
718-7 (3000963)
J02AC01 (21603080)
28540-3 (3003338)
2823-3 (3023103)
2951-2 (3019550)
62238-1 (40764999)
J01CR02 (21602863)
715-3 (3021589)
OMOP4822461 (32036)
106 (44777669)
14682-9 (3020564)
251B00000X (38004193)
G01AA10 (21602372)
93 (38004510)
XLD00 (2001306651)
22 (8756)
R10.4 (45568113)
21 (8717)
51483-6 (3030467)
87829-8 (36304419)
ZXE10 (2001311401)
19926-5 (3011505)
19870-5 (3020158)
20150-9 (3024653)
L02 (45538561)
K60.3 (45576995)
A02BC02 (21600097)
LabWAS
↥Mortality – FinRegistry
↥Association
Association between endpoint N14_BARTHOABSCESS and mortality.
Females
| Parameter | HR [95% CI] | p-value |
|---|---|---|
| N14_BARTHOABSCESS | 1.431 [1.2, 1.7] | < 0.001 |
| Birth year | 0.993 [0.98, 1.0] | 0.115 |
During the follow-up period (1.1.1998 — 31.12.2019), 231 out of 5332 females with N14_BARTHOABSCESS died.
Males
No dataMortality risk
Mortality risk for people of age
years, who have N14_BARTHOABSCESS.| N-year risk | Females | Males |
|---|---|---|
| 1 | 0.117% | No data |
| 5 | 0.766% | No data |
| 10 | 1.922% | No data |
| 15 | 3.835% | No data |
| 20 | 6.712% | No data |
Relationships between endpoints
↥Index endpoint: N14_BARTHOABSCESS – Abscess of Bartholin gland
GWS hits: 1