No definition available.
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
519870 |
1. Apply sex-specific ruleNone |
519870 |
2. Check conditionsNone |
519870 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
2 out of 7 registries used, show all original rules. |
103 |
4. Check minimum number of eventsNone |
103 |
5. Include endpoints |
275 |
6. Filter based on genotype QC (FinnGen only) |
268 |
Control definitions (FinnGen only)
Controls for this endpoint are individuals that are not cases.
Extra metadata
- First used in FinnGen datafreeze
- DF3
Summary Statistics
↥-FinRegistry-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | |||
| Whole population | 2783 | 1485 | 1289 |
| Only index persons | 2421 | 1322 | 1099 |
| Unadjusted period prevalence (%) | |||
| Whole population | 0.04 | 0.04 | 0.04 |
| Only index persons | 0.05 | 0.05 | 0.04 |
| Median age at first event (years) | |||
| Whole population | 25.36 | 29.73 | 20.19 |
| Only index persons | 27.32 | 31.23 | 22.61 |
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 268 | 176 | 92 |
| Unadjusted period prevalence (%) | 0.06 | 0.06 | 0.04 |
| Median age at first event (years) | 51.94 | 48.24 | 59.03 |
-FinRegistry-
Age distribution of first events
-FinnGen-
Age distribution of first events
-FinRegistry-
Year distribution of first events
-FinnGen-
Year distribution of first events
-FinRegistry-
Cumulative Incidence Function
-FinnGen-
Cumulative Incidence Function
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 275
- Matched controls
- 2750
TimeCodeWAS
↥TODO / Current known limitations:
- Only showing the top 500 codes, because showing all (sometimes 20k) makes the page too slow.
- Legend / how to read the glyphs.
- Proper column names.
- Show details (e.g. Fisher or Chi-square test, N cases and N controls) when clicking on a row.
- Explanation on the underlying data / how the TimeCodeWAS is done (e.g. matched cases / controls, eligibility).
- Download CSV not working.
- No filters and sorters.
- Limited amount of endpoints with TimeCodeWAS data.
- Cross-links to Risteys lab test pages for lab test codes.
M62.4 (45577312)
SMOKING-2-3-0 (2002330113)
R29.3 (45582699)
50373000 (4177340)
60621009 (4245997)
M76.6 (45596682)
R4110 (2001310233)
M03BX02 (21604116)
1 (38004446)
13 (38004458)
20 (38004465)
M72.2 (45553265)
R29.0 (45563297)
M20.1 (45606152)
OMOP4822020 (45756819)
21 (8717)
ER (9203)
OP (9202)
OMOP5117446 (33004)
251B00000X (38004193)
OMOP4822462 (581458)
OMOP4822461 (32036)
LabWAS
↥Mortality – FinRegistry
↥Association
Association between endpoint INCREASEDMUSCLETONE and mortality.
Females
| Parameter | HR [95% CI] | p-value |
|---|---|---|
| INCREASEDMUSCLETONE | 1.498 [1.12, 2.01] | 0.006 |
| Birth year | 0.997 [0.99, 1.01] | 0.455 |
During the follow-up period (1.1.1998 — 31.12.2019), 93 out of 1243 females with INCREASEDMUSCLETONE died.
Males
| Parameter | HR [95% CI] | p-value |
|---|---|---|
| INCREASEDMUSCLETONE | 1.505 [1.12, 2.02] | 0.006 |
| Birth year | 0.987 [0.98, 1.0] | 0.007 |
During the follow-up period (1.1.1998 — 31.12.2019), 122 out of 1128 males with INCREASEDMUSCLETONE died.
Mortality risk
Mortality risk for people of age
years, who have INCREASEDMUSCLETONE.| N-year risk | Females | Males |
|---|---|---|
| 1 | 0.187% | 0.339% |
| 5 | 0.974% | 1.718% |
| 10 | 2.335% | 4.324% |
| 15 | 4.498% | 8.337% |
| 20 | 7.859% | 13.408% |
Relationships between endpoints
↥Index endpoint: INCREASEDMUSCLETONE – Increased muscle tone
GWS hits: 1