No definition available.
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
519870 |
1. Apply sex-specific ruleNone |
519870 |
2. Check conditionsNone |
519870 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
2 out of 7 registries used, show all original rules. |
1962 |
4. Check minimum number of eventsNone |
1962 |
5. Include endpointsNone |
1962 |
6. Filter based on genotype QC (FinnGen only) |
1894 |
Control definitions (FinnGen only)
- Control exclude
- AB1_VIRAL_SKIN_MUCOUS_MEMBRANE
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF5
Similar endpoints
↥List of similar endpoints to
Varicella [chickenpox]
based on the number of shared cases.
Similar with more cases:
- Varicella [chickenpox], including avohilmo
- Viral infections characterized by skin and mucous membrane lesions
- Viral infections characterized by skin and mucous membrane lesions, including avohilmo
- Certain infectious and parasitic diseases
- Certain infectious and parasitic diseases, including avohilmo
Similar with less cases:
None
Case counts by codes
↥Summary Statistics
↥-FinRegistry-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | |||
| Whole population | 24317 | 7662 | 16552 |
| Only index persons | 20463 | 6106 | 14357 |
| Unadjusted period prevalence (%) | |||
| Whole population | 0.38 | 0.22 | 0.46 |
| Only index persons | 0.45 | 0.22 | 0.55 |
| Median age at first event (years) | |||
| Whole population | 15.07 | 5.26 | 19.52 |
| Only index persons | 15.83 | 6.61 | 19.75 |
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 1894 | 622 | 1272 |
| Unadjusted period prevalence (%) | 0.46 | 0.22 | 0.58 |
| Median age at first event (years) | 17.54 | 12.06 | 20.21 |
-FinRegistry-
Age distribution of first events
-FinnGen-
Age distribution of first events
-FinRegistry-
Year distribution of first events
-FinnGen-
Year distribution of first events
-FinRegistry-
Cumulative Incidence Function
-FinnGen-
Cumulative Incidence Function
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 1962
- Matched controls
- 19620
TimeCodeWAS
↥TODO / Current known limitations:
- Only showing the top 500 codes, because showing all (sometimes 20k) makes the page too slow.
- Legend / how to read the glyphs.
- Proper column names.
- Show details (e.g. Fisher or Chi-square test, N cases and N controls) when clicking on a row.
- Explanation on the underlying data / how the TimeCodeWAS is done (e.g. matched cases / controls, eligibility).
- Download CSV not working.
- No filters and sorters.
- Limited amount of endpoints with TimeCodeWAS data.
- Cross-links to Risteys lab test pages for lab test codes.
G02.0*B01.0 (2000502072)
G05.1*B01.1 (2000502091)
11483-5 (3012202)
29584-0 (3016018)
606-4 (3016914)
50373000 (4177340)
60621009 (4245997)
B01.8 (45566531)
B02.9 (45581143)
B01.9 (45590839)
R51.80 (2000503603)
SMOKING-2-2-0 (2002330110)
SMOKING-2-3-0 (2002330113)
2519-7 (3008037)
5013-8 (3008733)
29662-4 (3012220)
21594-7 (3014148)
29591-5 (3016881)
21598-8 (3016894)
20444-6 (3028369)
40982-1 (3038288)
39480-9 (3038515)
0527A (2000400514)
0529X (2000400516)
J17.1*B01.2 (2000502574)
GD1AA (2001303617)
GD1QA (2001303648)
PH2AE (2001309451)
Z2221 (2001311556)
J05AB11 (21603137)
N05BB01 (21604590)
1927-3 (3002032)
30350-3 (3004119)
19258-3 (3004529)
14631-6 (3006140)
7818-8 (3008230)
2746-6 (3012544)
14749-6 (3013826)
2075-0 (3014576)
26465-5 (3016543)
1798-8 (3016771)
7817-0 (3016888)
2880-3 (3019473)
6598-7 (3019800)
14744-7 (3020044)
1995-0 (3021347)
2021-4 (3021447)
10333-3 (3023410)
2705-2 (3024354)
14627-4 (3027273)
26454-9 (3027475)
51483-6 (3030467)
5894-1 (3033658)
40976-3 (3040853)
38917-1 (3042194)
34563-7 (3044290)
34531-4 (3044640)
33942-4 (3046896)
48065-7 (3051714)
OMOP5117446 (33004)
87829-8 (36304419)
44 (38004484)
82 (38004501)
93 (38004510)
57782-5 (40760892)
72493-0 (43055120)
B01AF01 (43534761)
Z94.0 (45566477)
R50.9 (45582716)
A49.9 (45590816)
C90.0 (45600562)
C90 (45755347)
L04AD01 (21603924)
J05AB01 (21603131)
11 (38004456)
39 (38004479)
H02AB04 (21602732)
14804-9 (3022250)
ANTIHYPERTENSIVE_DRUG-1 (2002330215)
2601-3 (3012095)
751-8 (3013650)
L04AX01 (21603927)
43730-1 (3043849)
L04AA06 (21603896)
14879-1 (3003458)
J01EE01 (21602961)
4679-7 (3027945)
1988-5 (3020460)
37 (38004477)
2695-5 (3026782)
600-7 (3023368)
XW000 (2001310618)
22664-7 (3020779)
2951-2 (3019550)
30385-9 (3002385)
60517-0 (40763571)
2823-3 (3023103)
58410-2 (40761511)
62238-1 (40764999)
ER (9203)
14682-9 (3020564)
14798-3 (3022948)
3034-6 (3004789)
14196-0 (3023520)
718-7 (3000963)
26464-8 (3010813)
30428-7 (3024731)
28539-5 (3035941)
20570-8 (3009542)
26453-1 (3026361)
26515-7 (3007461)
21 (8717)
28540-3 (3003338)
26485-3 (3019069)
26450-7 (3006504)
30180-4 (3022096)
26511-6 (3018010)
26478-8 (3002030)
26484-6 (3001604)
26444-0 (3006315)
19072-8 (3016431)
26474-7 (3019198)
26449-9 (3013115)
100906-7 (1761482)
H02AB06 (21602734)
22 (8756)
13 (38004458)
A07EA01 (21600653)
207NI0002X (38003841)
2472-9 (3028026)
OMOP4822458 (581477)
2465-3 (3005719)
1751-7 (3024561)
69738-3 (42870588)
29 (38004472)
OP (9202)
J01DB01 (21602870)
OMOP4822461 (32036)
5811-5 (3000330)
ZXD10 (2001311387)
1 (38004446)
IP (9201)
OMOP4822462 (581458)
55429-5 (40758558)
117 (2001600117)
2276-4 (3001122)
34714-6 (3032080)
26498-6 (3017181)
715-3 (3021589)
6768-6 (3035995)
N02BE01 (21604344)
H02AB09 (21602737)
19875-4 (3001668)
20155-8 (3023550)
69970-2 (42868459)
69982-7 (42868471)
69983-5 (42868472)
19926-5 (3011505)
19870-5 (3020158)
20150-9 (3024653)
10 (38004455)
24357-6 (3037467)
4 (38004449)
251B00000X (38004193)
68438-1 (40771025)
4537-7 (3013707)
5195-3 (3019284)
A12AA20 (21600872)
51480-2 (3031040)
1742-6 (3006923)
WX404 (2001310807)
J01CA04 (21602823)
18 (38004463)
3016-3 (3009201)
LabWAS
↥Mortality – FinRegistry
↥Association
Association between endpoint AB1_VARICELLA and mortality.
Females
| Parameter | HR [95% CI] | p-value |
|---|---|---|
| AB1_VARICELLA | 2.371 [1.77, 3.17] | < 0.001 |
| Birth year | 0.998 [0.99, 1.01] | 0.578 |
During the follow-up period (1.1.1998 — 31.12.2019), 230 out of 5335 females with AB1_VARICELLA died.
Males
| Parameter | HR [95% CI] | p-value |
|---|---|---|
| AB1_VARICELLA | 2.514 [1.95, 3.24] | < 0.001 |
| Birth year | 0.989 [0.98, 1.0] | 0.018 |
During the follow-up period (1.1.1998 — 31.12.2019), 291 out of 6337 males with AB1_VARICELLA died.
Mortality risk
Mortality risk for people of age
years, who have AB1_VARICELLA.| N-year risk | Females | Males |
|---|---|---|
| 1 | 0.272% | 0.409% |
| 5 | 1.555% | 2.968% |
| 10 | 3.899% | 7.396% |
| 15 | 7.226% | 14.074% |
| 20 | 12.554% | 22.812% |
Relationships between endpoints
↥Index endpoint: AB1_VARICELLA – Varicella [chickenpox]
GWS hits: -