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Toxic effect of other noxious substances eaten as food

ST19_TOXIC_EFFECT_OTHER_NOXIO_SUBST_EATEN_FOOD

Endpoint definition

Report an error or suggest an improvement for this endpoint codes

Endpoint definition steps

FinnGen

Phenotype data

557745

1. Apply sex-specific rule

None

557745

2. Check conditions

None

557745

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 T62
  • Cause of death: ICD-10 T62

2 out of 7 registries used, show all original rules.

163

4. Check minimum number of events

None

163

5. Include endpoints

None

163

6. Filter based on genotype QC (FinnGen only)

134

Control definitions (FinnGen only)

Control exclude
ST19_TOXIC_EFFEC_SUBST_CHIEF_NONME_SOURCE

Extra metadata

Level in the ICD hierarchy
3
First used in FinnGen datafreeze
DF4
Parent code in ICD-10
T5[1-9]|T6[0-5]
Name in latin
Effectus toxicus aliarum substantiarum nocivarum cibo sumptarum

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

-FinnGen-

Key figures

All Female Male
Number of individuals 134 69 65
Unadjusted period prevalence (%) 0.03 0.02 0.03
Median age at first event (years) 46.70 42.38 51.30

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

Matched cohort

Matched cases
149
Matched controls
1490
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
T62.0
ICD-10 Finland
Toxic effect: Ingested mushrooms
4728.4
143.7
115
*
X49
ICD-10 Finland
Accidental poisoning by and exposure to other and unspecified chemicals and noxious substances
89.2
26.9
29
*
T62.2
ICD-10 Finland
Toxic effect: Other ingested (parts of) plant(s)
+∞
18.1
17
*
X28
ICD-10 Finland
Contact with other specified venomous plants
70.7
11.8
13
*
T62.9
ICD-10 Finland
Toxic effect: Noxious substance eaten as food, unspecified
+∞
10.5
10
*
X69
ICD-10 Finland
Intentional self-poisoning by and exposure to other and unspecified chemicals and noxious substances
10.6
9.6
18
19
ZY010
NOMESCO Finland
Hospital outpatient
4.9
7.7
18
41
ZXE06
NOMESCO Finland
Procedure duration 50 to 59 minutes
4.8
7.2
17
39
X48
ICD-10 Finland
Accidental poisoning by and exposure to pesticides
+∞
6.3
6
*
T62.1
ICD-10 Finland
Toxic effect: Ingested berries
+∞
6.3
6
*
X58
ICD-10 Finland
Exposure to other specified factors
2.9
6.1
33
134

LabWAS

OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
29
109
3.06
6.10
3.2
4.0
0.93
2.00
mmol/l
0.81
23
88
79
495
2.27
5.67
6.4
6.9
1.21
1.22
mmol/l
0.92
73
450
28
109
2.93
5.52
3.2
4.0
7.35
7.38
ph
1.23
21
71
82
548
2.10
4.73
6.2
7.8
1.21
1.22
mmol/l
0.67
73
472
55
321
2.13
4.48
2.5
2.0
230.98
182.33
u/l
0.24
55
310
20
75
2.93
4.19
4.4
1.9
—
—
—
0
0
20
76
2.88
4.09
3.2
3.9
23.34
24.31
mmol/l
0.52
20
76
24
102
2.61
3.99
7.0
10.9
—
—
—
0
0
118
939
2.23
3.92
3.8
4.2
14.75
14.80
pmol/l
0.09
111
848
10
19
5.56
3.90
3.0
3.2
2.28
2.72
mmol/l
—
5
11
72
483
1.95
3.88
14.5
12.3
1.20
1.21
inr
0.03
63
404
54
330
2.00
3.79
3.4
4.3
7.39
7.39
ph
0.03
41
236
45
264
2.01
3.51
2.6
2.8
6.98
6.26
e6/l
0.08
40
241
7
10
7.28
3.40
15.6
18.5
997.14
863.30
nmol/l
—
7
10
19
78
2.65
3.37
1.8
1.4
0.45
0.40
mg/l
—
7
24
13
43
3.22
3.34
4.0
1.9
—
—
—
0
0
61
409
1.83
3.13
6.4
5.8
—
—
—
0
0
8
16
5.22
3.09
2.9
3.5
—
—
—
0
0
18
76
2.56
3.03
1.1
1.2
—
19.10
—
0
5
19
85
2.42
2.84
3.8
1.5
—
—
—
0
0
27
143
2.08
2.73
6.8
8.7
104.19
104.78
mmol/l
0.28
27
143
12
43
2.95
2.72
3.6
4.3
37.02
36.96
°c
0.10
12
43
12
41
3.09
2.69
2.5
3.4
23.80
24.09
mmol/l
0.14
12
41
20
96
2.25
2.57
7.4
10.2
1.33
1.38
mmol/l
0.13
20
96
9
28
3.35
2.35
3.1
5.7
1.03
1.45
mmol/l
—
9
28
21
109
2.08
2.24
3.6
1.7
—
—
—
0
0
8
24
3.46
2.21
3.4
3.7
3.66
3.90
mmol/l
—
8
24
21
110
2.06
2.19
3.6
1.7
—
—
—
0
0
6
160
0.35
2.18
1.7
1.4
—
—
—
0
0
19
96
2.12
2.17
3.1
4.8
0.50
0.69
%
—
8
29
22
118
2.01
2.15
8.0
10.3
7.41
7.42
ph
0.41
12
68
49
338
1.67
2.15
1.8
2.1
—
—
—
0
0
49
338
1.67
2.15
1.8
1.6
21.29
21.36
nmol/l
0.01
43
293
20
104
2.07
2.12
3.6
1.7
—
—
—
0
0
61
447
1.62
2.11
4.2
3.8
59.82
27.85
e6/l
0.27
47
312
21
112
2.02
2.09
3.6
1.7
—
—
—
0
0
20
105
2.05
2.07
3.1
4.8
0.89
0.88
%
—
9
34
54
386
1.63
2.05
3.7
3.1
22.38
47.02
e6/l
0.66
45
296
21
113
2.00
2.04
3.6
1.7
—
—
—
0
0
68
515
1.59
2.03
3.6
3.2
6.37
6.27
ph
0.32
44
279
56
405
1.61
2.03
4.3
3.7
19.02
26.32
ng/l
1.11
39
273
28
168
1.82
1.98
1.6
1.5
1129.76
1206.19
nmol/l
0.25
21
126
30
184
1.79
1.98
2.5
2.3
11.18
13.30
umol/l
1.04
30
172
5
11
4.66
1.95
1.0
2.3
—
—
—
0
0
44
302
1.65
1.95
5.7
4.5
—
—
—
0
0
14
65
2.27
1.95
1.9
1.7
—
—
—
0
0
34
218
1.73
1.93
2.8
2.8
472.97
544.87
mosm/kgh2o
1.12
29
191
12
52
2.42
1.93
2.3
2.8
0.66
0.62
%
0.18
12
52
32
203
1.73
1.89
1.8
1.7
423.35
466.87
pmol/l
0.42
26
176
50
358
1.60
1.86
3.3
3.4
—
—
—
0
0
126
1120
1.81
1.86
5.8
5.0
1.71
1.86
mu/l
1.20
121
1031
56
415
1.56
1.79
2.6
3.1
2.34
2.37
mmol/l
1.24
49
377
76
604
1.53
1.77
7.4
5.8
0.68
0.64
%
0.25
71
566
39
268
1.62
1.71
1.4
1.8
—
—
—
0
0
18
99
1.93
1.66
3.3
5.0
0.14
0.21
%
—
7
29
5
14
3.66
1.63
10.0
12.8
0.70
0.65
mmol/l
—
5
14
63
488
1.50
1.62
2.2
1.9
103.49
93.64
pmol/l
0.56
34
239
12
57
2.20
1.60
4.2
4.2
—
—
—
0
0
8
33
2.50
1.56
2.1
2.0
22.91
23.65
mmol/l
—
8
33
45
327
1.54
1.55
3.6
2.9
0.19
0.34
e6/l
0.62
37
237
28
181
1.67
1.54
2.4
2.2
2.32
2.31
g/l
0.04
28
164
10
45
2.31
1.50
2.3
2.1
1.60
1.68
g/l
—
10
40
43
313
1.53
1.46
3.7
2.9
—
—
estimate
—
0
0
30
201
1.62
1.45
1.3
1.6
—
—
—
0
0
19
112
1.80
1.43
4.0
2.6
0.22
0.22
g/l
0.02
19
101
125
1132
1.65
1.42
5.5
4.3
5.73
5.77
mmol/l
0.17
116
1042
52
396
1.48
1.42
8.0
5.6
—
—
—
0
0
11
53
2.16
1.42
3.4
4.0
—
—
—
0
0
25
161
1.66
1.40
2.5
2.4
21.13
22.72
%
0.24
25
151
41
298
1.52
1.40
4.2
3.7
1.02
1.02
kg/l
0.10
31
195
18
106
1.79
1.37
1.7
2.0
13.27
14.35
nmol/l
0.26
18
98
12
62
2.02
1.32
10.9
14.6
95.10
94.74
%
0.26
12
62
47
356
1.47
1.31
4.6
3.8
0.00
0.02
estimate
0.50
14
128
24
156
1.64
1.30
2.7
2.1
—
—
—
0
0
8
35
2.36
1.29
1.1
1.3
—
—
—
0
0
78
655
1.40
1.22
7.8
5.8
0.58
0.57
e9/l
0.24
71
561
12
64
1.95
1.22
10.9
13.7
0.93
1.23
%
0.87
12
64
6
26
2.36
1.20
1.2
1.2
56.33
378.11
e6/l
—
6
19
78
657
1.39
1.19
8.0
5.8
0.04
0.04
e9/l
0.42
71
560
5
20
2.55
1.16
1.2
1.1
—
—
—
0
0
80
681
1.38
1.12
9.0
6.1
0.20
0.19
e9/l
0.31
73
595
21
138
1.61
1.10
1.3
1.5
—
—
—
0
0
132
1232
1.63
1.07
20.5
14.1
19.26
23.11
mg/l
0.90
105
980
7
33
2.18
1.07
1.0
1.2
—
—
—
0
0
37
476
0.70
1.04
2.9
2.7
—
—
—
0
0
60
493
1.36
1.03
4.8
3.5
0.00
0.04
estimate
0.68
13
108
16
100
1.67
1.01
3.4
5.4
0.00
0.37
%
—
6
27
7
35
2.05
1.01
1.0
1.2
—
92.86
—
0
7
19
125
1.60
1.00
1.3
1.6
—
—
—
0
0
78
670
1.34
0.99
8.2
5.8
1.83
1.87
e9/l
0.19
71
594
11
62
1.84
0.97
11.6
14.5
0.55
0.68
%
0.44
11
62
23
160
1.52
0.96
1.2
1.3
2184.00
636.76
titre
—
5
37
12
71
1.75
0.92
3.6
2.1
28260.00
6922.64
u/l
—
6
26
8
43
1.91
0.89
1.0
1.4
—
—
—
0
0
15
96
1.63
0.88
1.1
1.3
32.55
165.34
u/ml
—
6
36
85
749
1.31
0.87
12.8
9.3
4.01
4.01
e9/l
0.00
78
640
67
576
1.30
0.80
13.5
10.0
0.00
0.00
e9/l
0.22
58
455
6
33
1.85
0.80
8.2
12.8
—
—
—
0
0
15
99
1.57
0.79
4.7
3.7
—
—
—
0
0
28
212
1.39
0.78
3.8
3.5
21.74
246.01
ng/l
2.09
21
150
8
131
0.59
0.78
1.5
1.1
—
—
—
0
0
12
75
1.65
0.77
2.8
3.3
—
—
—
0
0
7
38
1.88
0.74
1.1
1.1
—
—
—
0
0
11
68
1.67
0.74
1.1
1.3
—
—
—
0
0
134
1277
1.49
0.71
17.4
12.0
—
—
—
0
0
27
207
1.37
0.70
2.5
2.3
46.70
128.09
ug/g
1.67
20
161
5
27
1.88
0.69
1.0
1.2
—
—
—
0
0
13
87
1.54
0.66
2.2
2.9
67.75
66.77
g/l
0.13
13
82
17
121
1.46
0.66
1.4
1.9
—
—
—
0
0
12
79
1.56
0.65
1.5
2.8
—
—
—
0
0
73
648
1.25
0.64
5.0
3.5
0.00
0.00
estimate
-0.00
17
134
9
139
0.62
0.64
1.1
1.4
—
—
—
0
0
0
23
0.00
0.59
0.0
2.7
—
8.32
—
0
23
23
178
1.35
0.57
4.2
2.7
7.24
2.32
e6/l
0.71
14
89
73
656
1.22
0.55
5.1
3.5
0.00
0.00
estimate
-0.00
17
135
6
40
1.52
0.52
2.7
3.4
59.17
59.59
%
—
6
40
73
659
1.21
0.52
5.1
3.6
0.00
0.00
estimate
-0.00
15
125
114
1078
1.24
0.49
6.8
5.4
38.45
38.38
mmol/mol
0.03
108
1019
10
69
1.48
0.45
1.5
1.3
—
—
—
0
0
18
140
1.32
0.44
1.2
1.2
—
—
—
0
0
17
131
1.34
0.44
1.1
1.4
—
—
—
0
0
16
205
0.75
0.44
2.2
1.7
—
—
—
0
0
5
33
1.53
0.41
1.2
1.1
—
—
—
0
0
0
16
0.00
0.41
0.0
1.1
—
3.30
—
0
7
0
16
0.00
0.41
0.0
1.1
—
—
—
0
0
0
18
0.00
0.40
0.0
1.1
—
—
—
0
0
17
213
0.77
0.40
1.5
1.3
17.42
26.69
iu/ml
—
9
70
10
72
1.42
0.38
3.7
3.1
4.44
4.54
pmol/l
—
10
62
122
1173
1.22
0.37
5.1
4.4
4.70
4.62
mmol/l
0.38
114
1100
6
46
1.32
0.33
1.7
1.3
—
—
—
0
0
13
101
1.31
0.33
2.7
4.0
7.39
7.35
ph
—
7
69
40
355
1.17
0.33
4.5
2.8
—
—
—
0
0
17
138
1.26
0.32
2.6
1.8
—
—
—
0
0
35
308
1.18
0.32
4.4
4.2
1.75
11.45
mg/mmol
2.25
22
198
123
1190
1.19
0.30
5.9
5.0
2.86
2.73
mmol/l
0.76
114
1112
114
1098
1.16
0.29
4.3
3.7
1.43
1.26
mmol/l
1.20
105
1013
55
506
1.14
0.28
1.8
1.9
1.61
1.33
mmol/l
1.49
50
433
50
457
1.14
0.28
2.1
2.0
—
—
—
0
0
120
1166
1.15
0.23
5.0
4.4
1.39
1.45
mmol/l
0.84
112
1085
5
41
1.23
0.22
3.0
2.2
—
—
—
0
0
8
103
0.76
0.22
1.3
1.3
—
—
—
0
0
0
11
0.00
0.21
0.0
1.3
—
0.29
—
0
6
0
10
0.00
0.21
0.0
1.3
—
—
—
0
0
0
13
0.00
0.21
0.0
1.5
—
3.14
—
0
6
6
50
1.21
0.20
1.0
1.3
—
—
—
0
0
7
59
1.20
0.18
1.0
1.1
—
—
—
0
0
20
177
1.15
0.17
3.3
3.0
0.40
0.69
ug/l
2.14
11
109
21
187
1.14
0.17
1.5
1.3
25.39
6.55
u/ml
—
9
66
34
368
0.90
0.17
1.5
1.5
—
—
—
0
0
17
149
1.16
0.16
1.4
1.2
—
—
—
0
0
33
304
1.11
0.16
4.2
3.4
8.91
67.67
mg/l
2.34
24
197
109
1062
1.10
0.16
26.2
17.0
13.54
13.43
%
0.41
109
1051
16
141
1.15
0.14
3.1
2.7
1.66
1.82
%
0.34
16
127
13
113
1.16
0.13
1.8
2.2
333.69
399.53
nmol/l
0.66
13
104
7
63
1.12
0.08
1.6
1.1
0.88
0.88
g/l
—
7
63
32
306
1.06
0.06
7.2
4.9
—
—
—
0
0
35
336
1.05
0.06
1.4
1.5
1.80
2.29
g/l
1.06
19
197
36
373
0.95
0.05
2.1
2.3
—
—
—
0
0
37
360
1.04
0.03
1.6
1.4
0.53
0.86
u/ml
—
8
85
21
201
1.05
0.03
1.8
1.8
—
—
—
0
0
54
546
0.98
0.00
2.7
2.7
—
—
estimate
—
0
0
25
251
1.00
0.00
1.9
1.8
1.85
0.98
mg/l
0.40
20
197
38
379
1.00
0.00
5.2
3.0
0.00
0.00
estimate
-0.00
12
98
0
6
0.00
-0.00
0.0
1.7
—
—
—
0
0
0
8
0.00
-0.00
0.0
1.1
—
32.11
—
0
8
0
5
0.00
-0.00
0.0
1.0
—
145.20
—
0
5
0
5
0.00
-0.00
0.0
1.6
—
60.00
—
0
5
0
9
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
8
0.00
-0.00
0.0
1.4
—
—
—
0
0
0
6
0.00
-0.00
0.0
2.2
—
1865.83
—
0
6
0
8
0.00
-0.00
0.0
1.9
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.4
—
—
—
0
0
5
58
0.86
-0.00
1.6
2.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
2.0
—
201.74
—
0
5
7
79
0.88
-0.00
1.7
1.2
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.3
—
27.17
—
0
6
0
8
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.6
—
73.40
—
0
5
0
8
0.00
-0.00
0.0
1.5
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.0
—
2099.43
—
0
7
0
7
0.00
-0.00
0.0
1.4
—
116.29
—
0
7
0
8
0.00
-0.00
0.0
1.3
—
137.58
—
0
8
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
9
0.00
-0.00
0.0
1.7
—
12.39
—
0
9
0
5
0.00
-0.00
0.0
2.8
—
2.00
—
0
5
0
7
0.00
-0.00
0.0
1.4
—
—
—
0
0

Mortality – FinRegistry

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

Relationships between endpoints

Index endpoint: ST19_TOXIC_EFFECT_OTHER_NOXIO_SUBST_EATEN_FOOD – Toxic effect of other noxious substances eaten as food

GWS hits: -

This endpoint is excluded from FinRegistry analyses (omitted endpoint).