No definition available.
Other congenital malformations of male genital organs, including avohilmo
Q17_OTHER_CONGEN_MALFO_MALE_GENITAL_ORGANS_WIDE
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
557745 |
1. Apply sex-specific ruleonly males |
244368 |
2. Check conditionsNone |
244368 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
3 out of 7 registries used, show all original rules. |
313 |
4. Check minimum number of eventsNone |
313 |
5. Include endpointsNone |
313 |
6. Filter based on genotype QC (FinnGen only) |
269 |
Control definitions (FinnGen only)
- Control exclude
- Q17_CONGEN_MALFO_GENITAL_ORGANS
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF13
- Parent code in ICD-10
- Q5
- Name in latin
- Aliae malformationes congenitae organorum genitalium masculinorum
Similar endpoints
↥List of similar endpoints to
Other congenital malformations of male genital organs, including avohilmo
based on the number of shared cases.
Similar with more cases:
- Congenital malformations, deformations and chromosomal abnormalities, including avohilmo
- Any event in hilmo or specialist outpatient
Similar with less cases:
None
Case counts by codes
↥
Summary Statistics
↥-FinRegistry-
This endpoint is excluded (different definition than used in FinnGen).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 269 | - | 269 |
| Unadjusted period prevalence (%) | 0.12 | - | 0.12 |
| Median age at first event (years) | 9.68 | - | 9.68 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 300
- Matched controls
- 2999
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
Q55.20
ICD-10 Finland
Retractile testis
+∞
261.1
211
*
Q53.1
ICD-10 Finland
Undescended testicle, unilateral
+∞
60.5
56
*
KFH00
NOMESCO Finland
Operation for undescended or ectopic testis
+∞
50.4
47
*
Q55.6
ICD-10 Finland
Other congenital malformations of penis
+∞
24.3
23
*
KFH10
NOMESCO Finland
Orchiopexy
21.6
22.7
33
17
Q55.1
ICD-10 Finland
Hypoplasia of testis and scrotum
+∞
17.9
17
*
Q55.4
ICD-10 Finland
Other congenital malformations of vas deferens, epididymis, seminal vesicles and prostate
+∞
16.8
16
*
Q55.00
ICD-10 Finland
Congenital Monorkism
+∞
14.7
14
*
KF8AE
NOMESCO Finland
Ultrasound examination of scrotum
4.5
13.7
36
89
Q53.2
ICD-10 Finland
Undescended testicle, bilateral
+∞
12.6
12
*
Q53.9
ICD-10 Finland
Undescended testicle, unspecified
+∞
10.5
10
*
Q55.9
ICD-10 Finland
Congenital malformation of male genital organ, unspecified
+∞
9.4
9
*
KFH50
NOMESCO Finland
Insertion of prosthetic replacement for testis
37.9
9.1
11
*
G03GA01
ATC
chorionic gonadotrophin; parenteral
24.9
9.0
12
5
KGH20
NOMESCO Finland
Correction of induration or curvature of penis
+∞
8.4
8
*
Q55.2
ICD-10 Finland
Other congenital malformations of testis and scrotum
+∞
7.3
7
*
G03BA03
ATC
testosterone; systemic, rectal, sublingual, transdermal
3.4
6.7
25
79
K21.0
ICD-10 Finland
Gastro-oesophageal reflux disease with oesophagitis
3.6
6.5
22
65
Q53
ICD-10 Finland
Undescended testicle
+∞
6.3
6
*
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
44
185
2.61
7.18
2.4
2.4
5.34
4.06
u/l
0.59
26
118
34
141
2.59
5.69
2.4
2.5
8.89
5.41
iu/l
0.74
21
81
123
931
1.54
3.27
3.5
4.0
71.21
68.45
nmol/l
0.64
117
884
138
1096
1.48
2.81
12.9
14.1
1.22
1.22
mmol/l
0.28
127
1044
143
1153
1.46
2.65
12.1
13.0
1.21
1.22
mmol/l
0.07
130
1060
5
8
6.33
2.38
3.0
2.7
63.60
54.63
nmol/l
—
5
8
121
969
1.42
2.23
4.1
3.6
0.00
0.00
estimate
-0.00
16
152
16
76
2.17
2.06
1.1
1.1
—
9.23
—
0
9
89
686
1.42
2.00
5.6
4.3
0.29
0.18
e6/l
0.20
67
506
118
956
1.39
1.98
4.2
3.6
0.00
0.00
estimate
-0.00
16
163
171
1474
1.37
1.95
7.0
7.9
106.78
117.20
u/l
0.99
159
1412
75
568
1.43
1.85
4.3
4.2
1.74
1.54
ug/l
0.18
64
510
20
111
1.86
1.73
2.4
2.2
—
—
—
0
0
116
955
1.35
1.72
4.2
3.6
0.00
0.00
estimate
-0.00
17
173
95
758
1.37
1.72
2.9
3.6
—
—
estimate
—
0
0
0
48
0.00
1.71
0.0
2.4
—
2944.00
—
0
5
22
127
1.79
1.69
2.0
1.9
—
—
—
0
0
48
340
1.49
1.66
2.4
2.1
—
—
—
0
0
240
2217
1.41
1.59
16.3
16.6
139.50
139.59
mmol/l
0.26
230
2179
180
1599
1.31
1.50
4.2
3.2
14.60
14.78
pmol/l
0.43
166
1496
239
2216
1.38
1.46
16.4
16.6
3.99
3.99
mmol/l
0.00
228
2166
57
431
1.40
1.41
3.7
3.8
21.08
23.96
%
0.78
16
154
59
449
1.39
1.41
5.4
3.8
0.45
0.36
e6/l
0.19
33
236
12
60
2.04
1.40
1.4
1.7
—
—
—
0
0
9
41
2.23
1.38
1.4
2.5
—
—
—
0
0
20
120
1.71
1.38
1.7
3.8
82.67
72.63
ml/min/173m2
—
6
49
46
337
1.43
1.36
2.7
2.7
0.60
0.77
ug/l
0.67
18
173
10
47
2.17
1.35
6.6
5.9
1.97
2.16
ug/l
—
10
47
17
99
1.76
1.30
2.1
1.3
—
—
—
0
0
39
280
1.45
1.29
1.5
1.6
3.65
3.82
ratio
0.39
33
203
71
566
1.33
1.27
2.0
1.8
100.57
99.00
pmol/l
0.12
37
292
242
2265
1.35
1.26
18.5
19.0
13.36
13.18
%
1.56
236
2244
9
45
2.03
1.24
1.9
2.0
—
—
—
0
0
60
468
1.35
1.24
3.9
3.3
1.02
1.02
kg/l
0.21
35
298
5
19
2.66
1.22
2.8
2.1
—
—
—
0
0
58
454
1.34
1.17
5.1
4.0
0.67
0.52
e6/l
0.17
32
244
15
87
1.76
1.17
1.6
1.6
—
—
—
0
0
57
446
1.34
1.16
2.2
2.5
—
—
—
0
0
8
40
2.03
1.13
1.4
2.1
—
—
—
0
0
22
144
1.57
1.12
1.1
1.1
—
—
—
0
0
18
112
1.65
1.11
2.4
2.2
—
—
—
0
0
12
66
1.85
1.10
2.3
2.0
—
—
—
0
0
38
281
1.40
1.09
2.7
2.1
—
—
—
0
0
208
1924
1.26
1.07
4.8
3.7
2.12
1.98
mu/l
0.86
193
1814
5
22
2.29
1.03
3.6
2.5
2.04
3.59
nmol/l
—
5
22
59
474
1.30
1.00
2.3
2.6
—
—
—
0
0
9
49
1.86
0.99
1.4
1.9
—
—
—
0
0
7
36
1.97
0.97
4.6
4.7
11.43
7.53
%
—
7
36
13
77
1.72
0.96
1.6
1.3
—
—
—
0
0
176
1609
1.23
0.96
10.4
11.1
98.60
99.03
ml/min/173m2
0.08
142
1332
31
228
1.40
0.93
2.3
2.4
2.40
2.44
mmol/l
1.30
26
200
60
489
1.28
0.92
12.3
9.1
1.45
1.00
mmol/l
0.81
42
361
51
407
1.30
0.92
3.5
5.0
1.12
1.81
mg/l
0.90
39
299
37
284
1.34
0.87
2.4
2.0
—
—
—
0
0
183
1691
1.21
0.86
4.9
4.6
35.84
37.62
mmol/mol
2.77
178
1624
19
129
1.50
0.85
3.6
2.9
—
—
—
0
0
20
138
1.48
0.84
1.2
1.4
188.67
107.09
u/ml
—
6
44
111
982
1.21
0.82
7.3
9.0
19.56
20.28
umol/l
0.07
106
943
254
2433
1.28
0.81
14.2
14.6
71.83
71.94
umol/l
0.02
248
2405
0
25
0.00
0.79
0.0
1.0
—
—
—
0
0
28
211
1.36
0.75
1.4
1.5
3.47
3.53
mmol/l
0.12
21
133
8
135
0.58
0.75
2.6
2.1
—
—
—
0
0
53
439
1.25
0.73
4.5
3.9
0.00
0.02
estimate
0.74
15
153
7
39
1.81
0.73
1.1
1.2
—
—
—
0
0
7
40
1.77
0.71
4.9
5.3
0.29
0.70
index
—
7
40
250
2401
1.25
0.70
10.9
11.2
33.38
32.35
u/l
0.23
240
2350
9
59
1.54
0.69
1.9
1.7
—
—
—
0
0
164
1522
1.17
0.66
4.1
4.7
6.18
7.62
mm/h
1.62
153
1439
28
216
1.33
0.66
1.5
1.6
400.26
440.12
pmol/l
0.36
23
191
7
44
1.60
0.65
5.1
5.2
22.14
23.68
umol/l
—
7
44
43
355
1.25
0.62
1.6
1.5
19.55
19.08
nmol/l
0.10
38
313
0
22
0.00
0.59
0.0
4.3
—
6.40
—
0
22
0
23
0.00
0.58
0.0
1.0
—
—
—
0
0
6
35
1.73
0.58
1.0
1.0
0.67
4.49
u/ml
—
6
35
197
1868
1.16
0.56
4.1
4.0
4.39
4.43
mmol/l
0.24
188
1801
8
122
0.65
0.56
1.0
1.1
1.43
1.41
g/l
—
8
122
8
124
0.64
0.56
1.0
1.1
0.88
0.92
g/l
—
8
124
6
38
1.59
0.54
1.2
2.0
—
—
—
0
0
11
75
1.48
0.51
2.2
2.1
—
—
—
0
0
139
1293
1.14
0.51
8.3
8.8
6.31
6.48
mmol/l
0.40
133
1256
73
650
1.16
0.49
4.2
3.2
0.00
0.02
estimate
0.50
16
154
17
128
1.35
0.48
3.4
3.9
0.02
0.14
e6/l
2.76
17
123
17
128
1.35
0.48
4.5
7.8
—
—
—
0
0
5
82
0.60
0.46
1.0
1.2
—
—
—
0
0
11
78
1.43
0.43
2.3
2.0
—
—
—
0
0
17
217
0.77
0.43
1.5
1.2
1.03
2.31
u/ml
—
6
72
27
222
1.24
0.42
9.3
16.1
-0.22
0.51
mmol/l
0.69
20
186
0
16
0.00
0.41
0.0
1.2
—
—
—
0
0
0
16
0.00
0.41
0.0
1.2
—
—
—
0
0
0
16
0.00
0.41
0.0
1.2
—
—
—
0
0
0
16
0.00
0.41
0.0
1.2
—
—
—
0
0
56
496
1.16
0.41
2.9
3.6
—
—
—
0
0
0
17
0.00
0.41
0.0
1.2
—
—
—
0
0
12
159
0.74
0.39
1.9
1.7
—
—
—
0
0
5
35
1.44
0.39
1.2
1.1
28.60
39.21
iu/ml
—
5
35
83
904
0.89
0.39
2.0
1.9
1.71
2.81
u/ml
0.45
14
164
5
37
1.36
0.37
3.2
10.9
7.32
9.14
pmol/l
—
5
37
13
99
1.33
0.36
2.8
1.5
290.92
319.99
mu/l
0.21
13
99
10
73
1.38
0.35
3.8
3.5
—
—
—
0
0
22
182
1.22
0.34
2.9
3.0
—
—
—
0
0
180
1728
1.10
0.33
3.7
3.5
1.25
1.26
mmol/l
0.06
172
1646
23
273
0.83
0.33
1.0
1.1
—
—
—
0
0
160
1529
1.10
0.32
4.1
4.5
41.31
41.44
u/l
0.01
155
1489
11
141
0.77
0.30
17.0
11.0
1.52
1.32
%
0.24
11
141
7
56
1.26
0.29
4.0
5.5
95.14
94.54
%
—
7
56
20
167
1.21
0.29
2.9
2.9
—
—
—
0
0
18
149
1.22
0.28
1.6
1.9
0.30
0.32
mg/l
—
10
69
13
161
0.80
0.28
3.2
1.6
—
—
—
0
0
21
246
0.84
0.27
1.5
1.3
6.25
3.66
u/ml
0.33
16
191
99
933
1.09
0.26
3.5
3.7
126.61
111.97
ug/l
0.21
92
898
42
379
1.13
0.25
2.1
1.9
1.53
1.45
%
0.28
35
346
11
137
0.80
0.25
17.0
11.2
0.70
0.59
%
0.56
11
137
159
1533
1.08
0.24
11.0
13.9
3.74
3.63
e9/l
0.24
126
1261
244
2393
1.10
0.24
18.2
18.3
337.22
337.21
g/l
0.00
244
2376
81
761
1.09
0.23
2.1
2.1
1.41
1.38
mmol/l
0.08
73
698
247
2426
1.10
0.22
14.3
13.6
28.49
25.07
mg/l
0.74
185
1761
0
11
0.00
0.21
0.0
1.8
—
—
—
0
0
0
11
0.00
0.21
0.0
1.2
—
—
—
0
0
0
10
0.00
0.21
0.0
1.2
—
—
—
0
0
5
43
1.17
0.21
2.8
1.8
—
—
—
0
0
0
13
0.00
0.21
0.0
1.2
—
—
—
0
0
0
13
0.00
0.21
0.0
1.2
—
—
—
0
0
19
218
0.86
0.20
1.3
1.3
3.43
3.14
u/ml
0.03
14
173
0
14
0.00
0.20
0.0
1.1
—
—
—
0
0
0
14
0.00
0.20
0.0
2.5
—
3.31
—
0
14
10
81
1.24
0.19
1.0
1.0
—
—
—
0
0
10
81
1.24
0.19
1.0
1.0
—
—
—
0
0
170
1654
1.06
0.18
3.7
3.3
5.59
5.71
mmol/l
0.58
157
1534
18
157
1.16
0.18
1.6
1.3
—
—
—
0
0
52
486
1.08
0.17
2.8
2.9
0.00
0.00
estimate
-0.00
16
138
5
68
0.73
0.17
12.8
4.5
25.20
27.03
%
—
5
68
277
2743
1.12
0.17
21.0
20.3
254.73
254.52
e9/l
0.02
267
2652
277
2743
1.12
0.17
20.9
20.2
87.36
87.12
fl
0.32
272
2721
189
1848
1.06
0.16
4.0
3.9
1.28
1.29
mmol/l
0.17
179
1770
227
2232
1.07
0.16
3.6
3.7
—
—
—
0
0
8
70
1.15
0.16
1.1
1.7
—
—
—
0
0
6
76
0.78
0.16
10.7
4.1
266.50
565.96
e6/l
—
6
46
6
77
0.77
0.16
10.5
4.1
218.00
204.92
e6/l
—
6
49
277
2745
1.11
0.15
21.7
21.5
42.22
43.29
%
0.28
272
2721
277
2745
1.11
0.15
20.9
20.2
4.83
4.81
e12/l
0.24
266
2647
42
392
1.08
0.15
3.4
4.7
5.03
46.84
mg/mmol
0.55
31
287
277
2746
1.11
0.14
21.3
20.6
142.41
141.03
g/l
0.71
272
2725
190
1864
1.05
0.13
4.5
4.2
2.76
2.73
mmol/l
0.21
181
1783
15
133
1.13
0.12
1.1
1.1
0.06
1.36
u/ml
—
6
80
33
308
1.08
0.12
10.6
12.5
106.21
104.69
mmol/l
1.49
33
308
40
378
1.07
0.10
5.0
6.4
1503.03
1069.99
ng/l
0.35
33
306
5
44
1.14
0.10
1.0
1.1
—
—
—
0
0
12
134
0.89
0.09
1.6
1.4
—
—
—
0
0
6
56
1.07
0.08
1.0
2.0
—
—
—
0
0
21
226
0.92
0.08
1.3
1.2
6.85
7.49
u/ml
0.06
15
175
6
57
1.05
0.08
1.8
1.5
—
—
—
0
0
5
61
0.82
0.08
1.2
2.1
—
—
—
0
0
5
65
0.77
0.08
3.0
2.2
—
76.00
—
0
5
37
353
1.05
0.07
12.3
15.2
5.35
6.07
mmol/l
0.95
37
346
7
80
0.87
0.07
2.7
1.3
—
—
—
0
0
7
80
0.87
0.07
2.7
1.3
—
—
—
0
0
27
285
0.94
0.07
14.5
15.9
1.23
1.46
mmol/l
1.11
27
274
9
104
0.86
0.06
1.6
1.8
—
—
—
0
0
21
222
0.94
0.05
1.3
1.2
2.76
1.59
u/ml
0.27
14
169
17
159
1.07
0.05
3.6
1.8
—
—
—
0
0
37
382
0.96
0.04
3.5
4.3
197.27
992.59
ng/l
2.03
26
266
54
527
1.03
0.04
2.9
3.2
59.52
43.00
ng/l
0.16
31
317
17
179
0.95
0.03
2.1
1.9
156.40
180.42
u/ml
—
10
76
14
147
0.95
0.01
2.1
1.8
—
—
—
0
0
15
156
0.96
0.00
1.6
1.4
—
—
—
0
0
53
528
1.00
0.00
11.7
10.5
1.76
1.20
mmol/l
1.08
42
441
95
953
0.99
0.00
2.0
1.9
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.1
—
581.00
—
0
7
0
7
0.00
-0.00
0.0
1.1
—
5.39
—
0
7
0
8
0.00
-0.00
0.0
1.9
—
—
—
0
0
0
8
0.00
-0.00
0.0
1.4
—
—
—
0
0
5
56
0.89
-0.00
1.2
1.9
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.1
—
45.86
—
0
7
5
52
0.96
-0.00
1.2
1.3
—
—
—
0
0
0
5
0.00
-0.00
0.0
21.6
—
—
—
0
0
0
9
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
8
0.00
-0.00
0.0
1.9
—
—
—
0
0
0
7
0.00
-0.00
0.0
4.1
—
9.89
—
0
7
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.0
—
9.43
—
0
7
0
6
0.00
-0.00
0.0
9.2
—
12.82
—
0
6
0
5
0.00
-0.00
0.0
1.0
—
11.92
—
0
5
7
73
0.96
-0.00
9.3
4.5
—
—
—
0
0
0
7
0.00
-0.00
0.0
4.1
—
4.64
—
0
7
7
74
0.94
-0.00
9.1
4.4
18.29
10.20
%
—
7
74
0
9
0.00
-0.00
0.0
1.1
—
18.78
—
0
9
Mortality – FinRegistry
↥This endpoint is excluded (different definition than used in FinnGen).
Relationships between endpoints
↥Index endpoint: Q17_OTHER_CONGEN_MALFO_MALE_GENITAL_ORGANS_WIDE – Other congenital malformations of male genital organs, including avohilmo
GWS hits: 1
This endpoint is excluded (different definition than used in FinnGen).