male genital tuberculosis: mycobacterium infections of the male reproductive tract (genitalia, male).
Other congenital malformations of male genital organs
DOID EFO Endpoint Browser PheWeb
Q17_OTHER_CONGEN_MALFO_MALE_GENITAL_ORGANS
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
557745 |
1. Apply sex-specific ruleonly males |
244368 |
2. Check conditionsNone |
244368 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters: 2 out of 7 registries used, show all original rules. |
281 |
4. Check minimum number of eventsNone |
281 |
5. Include endpointsNone |
281 |
6. Filter based on genotype QC (FinnGen only) |
238 |
Control definitions (FinnGen only)
- Control exclude
- Q17_CONGEN_MALFO_GENITAL_ORGANS
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF12
- Parent code in ICD-10
- Q5
- Name in latin
- Aliae malformationes congenitae organorum genitalium masculinorum
Similar endpoints
↥List of similar endpoints to
Other congenital malformations of male genital organs
based on the number of shared cases.
Similar with more cases:
- Congenital malformations of genital organs
- Congenital malformations, deformations and chromosomal abnormalities
- Congenital malformations, deformations and chromosomal abnormalities, including avohilmo
- Any event in hilmo or specialist outpatient
Similar with less cases:
None
Case counts by codes
↥
Summary Statistics
↥-FinRegistry-
This endpoint is excluded (different definition than used in FinnGen).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 238 | - | 238 |
| Unadjusted period prevalence (%) | 0.11 | - | 0.11 |
| Median age at first event (years) | 8.84 | - | 8.84 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 268
- Matched controls
- 2680
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
Q55.20
ICD-10 Finland
Retractile testis
2172.6
235.8
194
*
Q53.1
ICD-10 Finland
Undescended testicle, unilateral
+∞
59.6
55
*
KFH00
NOMESCO Finland
Operation for undescended or ectopic testis
+∞
49.5
46
*
Q55.6
ICD-10 Finland
Other congenital malformations of penis
+∞
24.3
23
*
KFH10
NOMESCO Finland
Orchiopexy
21.9
22.8
33
17
Q55.1
ICD-10 Finland
Hypoplasia of testis and scrotum
+∞
15.8
15
*
Q55.00
ICD-10 Finland
Congenital Monorkism
+∞
14.7
14
*
KF8AE
NOMESCO Finland
Ultrasound examination of scrotum
4.7
13.6
34
81
Q53.2
ICD-10 Finland
Undescended testicle, bilateral
+∞
12.6
12
*
Q55.4
ICD-10 Finland
Other congenital malformations of vas deferens, epididymis, seminal vesicles and prostate
+∞
9.4
9
*
Q53.9
ICD-10 Finland
Undescended testicle, unspecified
+∞
9.4
9
*
Q55.9
ICD-10 Finland
Congenital malformation of male genital organ, unspecified
+∞
9.4
9
*
G03GA01
ATC
chorionic gonadotrophin; parenteral
25.0
9.0
12
5
KFH50
NOMESCO Finland
Insertion of prosthetic replacement for testis
51.7
8.7
10
*
KGH20
NOMESCO Finland
Correction of induration or curvature of penis
+∞
8.4
8
*
Q55.2
ICD-10 Finland
Other congenital malformations of testis and scrotum
+∞
7.3
7
*
J01EA01
ATC
trimethoprim; systemic
3.8
6.9
21
58
G03BA03
ATC
testosterone; systemic, rectal, sublingual, transdermal
3.6
6.3
21
62
Q53
ICD-10 Finland
Undescended testicle
+∞
6.3
6
*
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
38
172
2.41
5.34
2.4
2.4
4.89
4.02
u/l
0.42
22
107
30
132
2.43
4.48
2.5
2.6
9.28
5.54
iu/l
0.72
19
72
123
966
1.51
2.74
13.2
14.9
1.22
1.22
mmol/l
0.48
114
921
107
833
1.47
2.42
3.5
4.0
70.96
68.21
nmol/l
0.58
102
791
5
8
6.34
2.38
3.0
2.8
63.60
54.62
nmol/l
—
5
8
126
1015
1.46
2.38
12.2
13.6
1.22
1.22
mmol/l
0.05
115
936
15
65
2.39
2.36
1.1
1.1
—
10.31
—
0
8
106
853
1.40
1.91
4.2
3.7
0.00
0.00
estimate
-0.00
15
130
78
602
1.42
1.77
5.8
4.4
0.30
0.17
e6/l
0.23
61
443
151
1303
1.36
1.72
7.1
8.0
108.25
119.46
u/l
0.96
139
1247
20
112
1.85
1.70
1.6
1.9
—
—
—
0
0
103
841
1.37
1.66
4.3
3.7
0.00
0.00
estimate
-0.00
15
139
43
299
1.52
1.65
1.9
2.2
—
—
—
0
0
213
1956
1.43
1.58
15.2
16.8
3.99
3.99
mmol/l
0.05
203
1912
10
44
2.32
1.57
6.6
6.0
1.97
2.19
ug/l
—
10
44
213
1957
1.43
1.57
15.2
16.8
139.39
139.61
mmol/l
0.75
205
1925
8
33
2.47
1.55
1.3
2.4
—
—
—
0
0
160
1410
1.33
1.50
4.2
3.2
14.72
14.81
pmol/l
0.16
147
1315
83
664
1.36
1.50
2.7
3.7
—
—
estimate
—
0
0
101
841
1.32
1.39
4.3
3.7
0.00
0.00
estimate
-0.00
16
148
0
38
0.00
1.35
0.0
5.8
—
—
—
0
0
0
38
0.00
1.35
0.0
5.8
—
—
—
0
0
186
1693
1.32
1.30
4.7
3.7
2.09
1.99
mu/l
0.53
171
1592
17
100
1.75
1.27
1.9
2.3
—
—
—
0
0
5
19
2.66
1.22
3.6
2.7
2.04
2.47
nmol/l
—
5
19
47
354
1.40
1.22
2.8
4.9
1.10
1.85
mg/l
0.87
36
255
13
71
1.87
1.21
1.6
1.3
—
—
—
0
0
54
418
1.37
1.19
3.9
3.2
1.02
1.02
kg/l
0.18
30
262
20
126
1.63
1.18
1.1
1.1
—
—
—
0
0
7
31
2.29
1.11
1.1
2.0
—
—
—
0
0
8
41
1.98
1.09
1.5
1.9
—
—
—
0
0
7
34
2.09
1.03
1.1
1.3
—
—
—
0
0
51
401
1.34
1.03
5.7
3.9
0.43
0.37
e6/l
0.11
30
210
10
53
1.92
1.02
1.2
1.7
—
—
—
0
0
57
456
1.32
1.02
4.2
4.2
1.41
1.49
ug/l
0.12
46
409
99
851
1.26
1.02
6.6
9.4
19.13
20.54
umol/l
0.14
94
816
32
233
1.42
1.01
1.4
1.7
3.78
3.84
ratio
0.09
26
174
16
100
1.64
0.99
1.9
2.3
—
—
—
0
0
13
77
1.72
0.97
1.5
1.6
—
—
—
0
0
55
442
1.31
0.96
12.7
9.1
1.50
0.96
mmol/l
0.95
38
324
48
379
1.32
0.94
4.5
3.9
0.00
0.01
estimate
0.50
14
130
7
129
0.53
0.90
2.7
2.1
—
—
—
0
0
14
87
1.64
0.89
1.4
1.4
—
—
—
0
0
6
30
2.02
0.87
1.2
2.0
—
—
—
0
0
50
402
1.30
0.87
5.4
4.2
0.70
0.52
e6/l
0.19
29
214
213
2016
1.28
0.85
17.3
19.3
13.37
13.17
%
1.63
207
1999
33
251
1.36
0.83
2.1
2.1
—
—
—
0
0
59
488
1.27
0.83
2.0
1.8
100.27
100.68
pmol/l
0.02
30
251
6
32
1.89
0.82
1.0
1.0
0.67
4.80
u/ml
—
6
32
27
199
1.40
0.82
2.1
2.5
2.39
2.43
mmol/l
0.93
22
175
226
2159
1.30
0.80
13.0
14.5
71.11
71.33
umol/l
0.04
220
2135
160
1474
1.21
0.80
5.0
4.5
35.93
37.36
mmol/mol
1.63
155
1413
34
262
1.34
0.80
2.6
2.7
0.67
0.76
ug/l
0.22
12
136
0
25
0.00
0.79
0.0
1.1
—
—
—
0
0
10
59
1.72
0.77
1.8
2.2
—
—
—
0
0
6
34
1.78
0.77
4.3
4.8
10.17
7.32
%
—
6
34
153
1411
1.20
0.73
9.8
10.9
100.29
100.25
ml/min/173m2
0.01
123
1152
7
40
1.77
0.72
1.7
2.1
—
—
—
0
0
124
1125
1.19
0.71
8.3
9.2
6.37
6.42
mmol/l
0.09
118
1092
17
120
1.44
0.66
1.1
1.3
194.40
121.52
u/ml
—
5
37
49
410
1.24
0.64
2.2
2.6
—
—
—
0
0
16
114
1.43
0.60
3.5
2.9
—
—
—
0
0
0
21
0.00
0.60
0.0
4.1
—
6.42
—
0
21
32
256
1.28
0.60
1.9
2.0
—
—
—
0
0
41
339
1.25
0.59
3.9
3.8
22.05
23.41
%
0.24
11
115
0
22
0.00
0.59
0.0
1.1
—
—
—
0
0
0
22
0.00
0.59
0.0
1.0
—
—
—
0
0
0
22
0.00
0.59
0.0
1.1
—
—
—
0
0
0
22
0.00
0.59
0.0
1.1
—
—
—
0
0
0
22
0.00
0.59
0.0
1.1
—
—
—
0
0
0
23
0.00
0.58
0.0
1.0
—
—
—
0
0
0
23
0.00
0.58
0.0
1.1
—
—
—
0
0
221
2128
1.22
0.57
10.2
11.4
33.87
31.89
u/l
0.47
212
2083
23
179
1.31
0.53
1.1
1.5
3.49
3.49
mmol/l
0.01
16
119
6
39
1.55
0.53
5.5
5.3
0.33
0.69
index
—
6
39
15
109
1.40
0.52
4.7
6.5
—
—
—
0
0
172
1631
1.15
0.50
3.9
3.9
4.36
4.42
mmol/l
0.39
163
1570
37
312
1.22
0.46
1.7
1.5
20.95
18.70
nmol/l
0.58
32
276
7
51
1.38
0.44
4.0
5.7
95.14
95.41
%
—
7
51
143
1347
1.13
0.44
4.0
4.9
6.09
7.41
mm/h
1.38
133
1274
5
31
1.62
0.43
1.2
1.0
28.60
42.37
iu/ml
—
5
31
10
139
0.71
0.43
3.4
1.6
—
—
—
0
0
50
438
1.17
0.42
2.3
2.7
—
—
—
0
0
5
33
1.52
0.41
3.2
12.1
7.32
9.50
pmol/l
—
5
33
0
15
0.00
0.41
0.0
1.1
—
—
—
0
0
0
15
0.00
0.41
0.0
1.1
—
—
—
0
0
0
15
0.00
0.41
0.0
1.1
—
—
—
0
0
0
15
0.00
0.41
0.0
1.1
—
—
—
0
0
0
16
0.00
0.41
0.0
1.1
—
—
—
0
0
23
187
1.25
0.40
10.0
16.8
13.81
14.45
kpa
0.27
23
178
23
187
1.25
0.40
10.0
16.9
4.99
5.34
kpa
1.44
23
177
13
97
1.36
0.40
1.3
1.2
—
2.24
—
0
7
0
19
0.00
0.39
0.0
1.1
—
—
—
0
0
142
1344
1.12
0.39
3.9
4.6
42.57
39.21
u/l
0.34
137
1308
9
66
1.38
0.39
1.9
4.1
—
—
—
0
0
39
338
1.18
0.38
2.1
1.9
1.52
1.41
%
0.49
32
308
8
111
0.71
0.38
1.0
1.1
1.43
1.42
g/l
—
8
111
9
68
1.33
0.38
1.6
2.3
—
—
—
0
0
8
113
0.70
0.38
1.0
1.1
0.88
0.91
g/l
—
8
113
23
189
1.24
0.37
1.6
1.6
353.17
441.17
pmol/l
1.09
18
168
63
569
1.14
0.37
4.1
3.2
0.00
0.00
estimate
-0.00
15
132
5
76
0.65
0.36
1.0
1.0
6.96
7.34
kpa
—
5
69
5
76
0.65
0.36
1.0
1.2
—
—
—
0
0
23
190
1.23
0.36
10.0
16.6
-0.36
0.47
mmol/l
0.68
17
163
9
121
0.73
0.36
1.4
1.4
—
—
—
0
0
6
45
1.34
0.34
1.8
1.5
—
—
—
0
0
221
2157
1.14
0.32
13.6
13.6
28.57
24.94
mg/l
0.74
165
1565
49
441
1.14
0.30
2.6
3.7
—
—
—
0
0
7
54
1.30
0.30
1.7
1.9
—
—
—
0
0
143
1368
1.10
0.29
9.2
14.6
3.83
3.59
e9/l
0.60
114
1115
16
130
1.25
0.29
1.7
1.9
0.30
0.31
mg/l
—
8
62
10
76
1.33
0.28
3.2
12.5
23.18
24.20
mmol/l
—
10
70
156
1500
1.10
0.28
3.5
3.4
1.25
1.24
mmol/l
0.03
148
1428
5
73
0.68
0.26
9.0
4.3
285.80
523.39
e6/l
—
5
44
5
74
0.67
0.26
8.8
4.3
253.60
189.68
e6/l
—
5
47
5
75
0.66
0.26
1.0
1.0
3.22
3.08
kpa
—
5
68
9
72
1.26
0.26
1.3
2.2
—
—
—
0
0
9
72
1.26
0.26
1.0
1.1
—
—
—
0
0
14
170
0.81
0.26
2.3
1.9
161.43
173.56
u/ml
—
7
72
149
1434
1.09
0.26
3.6
3.2
5.61
5.69
mmol/l
0.32
136
1328
9
73
1.24
0.25
1.0
1.1
—
—
—
0
0
20
171
1.18
0.24
3.1
3.0
—
—
—
0
0
17
143
1.20
0.24
1.5
1.3
—
—
—
0
0
88
831
1.09
0.23
3.5
3.8
105.36
107.58
ug/l
0.04
81
800
10
125
0.79
0.23
18.6
11.8
1.28
1.37
%
—
10
125
77
818
0.92
0.23
2.1
1.8
1.75
3.07
u/ml
0.50
13
144
15
125
1.21
0.23
1.1
1.1
0.06
1.44
u/ml
—
6
76
12
146
0.81
0.22
1.9
1.7
—
—
—
0
0
5
41
1.22
0.22
6.8
5.1
20.80
23.63
umol/l
—
5
41
0
11
0.00
0.21
0.0
1.2
—
—
—
0
0
0
11
0.00
0.21
0.0
1.2
—
—
—
0
0
0
10
0.00
0.21
0.0
1.2
—
—
—
0
0
0
10
0.00
0.21
0.0
1.9
—
—
—
0
0
0
13
0.00
0.21
0.0
2.6
—
3.42
—
0
13
0
13
0.00
0.21
0.0
1.2
—
—
—
0
0
18
155
1.17
0.20
3.1
3.0
—
—
—
0
0
0
14
0.00
0.20
0.0
1.1
—
—
—
0
0
0
14
0.00
0.20
0.0
2.1
—
—
—
0
0
36
328
1.11
0.19
5.3
6.1
1700.21
1117.04
ng/l
0.44
29
267
10
121
0.82
0.18
18.6
12.1
0.68
0.58
%
—
10
121
7
63
1.11
0.17
1.1
1.6
—
—
—
0
0
34
312
1.10
0.17
11.4
16.0
5.51
6.11
mmol/l
0.67
34
306
36
332
1.10
0.16
3.6
4.6
5.50
52.60
mg/mmol
0.52
28
246
23
255
0.89
0.16
16.2
16.4
1.28
1.40
mmol/l
0.50
23
244
6
76
0.78
0.16
2.8
1.3
—
—
—
0
0
6
76
0.78
0.16
2.8
1.3
—
—
—
0
0
165
1617
1.05
0.13
3.9
3.8
1.27
1.29
mmol/l
0.32
155
1547
166
1629
1.05
0.12
4.3
4.0
2.74
2.73
mmol/l
0.04
157
1557
21
230
0.91
0.12
1.5
1.3
6.25
3.17
u/ml
0.41
16
178
30
279
1.08
0.11
11.3
12.6
106.20
104.63
mmol/l
1.57
30
279
70
673
1.05
0.11
2.2
2.1
1.46
1.38
mmol/l
0.24
62
623
84
867
0.95
0.10
2.1
1.9
—
—
—
0
0
5
45
1.11
0.10
1.2
1.4
—
—
—
0
0
14
155
0.90
0.09
9.8
17.1
133.21
126.79
g/l
0.47
14
150
19
206
0.92
0.09
1.3
1.3
3.43
3.05
u/ml
0.05
14
164
6
54
1.11
0.09
1.0
2.0
—
—
—
0
0
6
55
1.09
0.09
4.2
4.2
2.30
16.67
u/ml
—
6
55
246
2444
1.08
0.08
19.6
20.2
87.09
86.97
fl
0.12
241
2425
23
246
0.93
0.08
1.0
1.1
—
—
—
0
0
6
70
0.85
0.07
7.5
4.6
19.83
10.49
%
—
6
70
44
422
1.05
0.07
2.6
2.9
0.00
0.00
estimate
-0.00
15
120
246
2445
1.07
0.07
19.7
20.3
254.31
255.04
e9/l
0.06
236
2360
8
93
0.86
0.07
1.4
1.8
—
—
—
0
0
246
2446
1.07
0.07
19.7
20.2
4.85
4.81
e12/l
0.52
235
2355
246
2446
1.07
0.07
20.5
21.6
42.22
41.61
%
1.30
241
2425
47
454
1.04
0.06
2.7
3.1
64.11
44.54
ng/l
0.16
27
270
246
2447
1.06
0.06
20.1
20.5
142.60
140.90
g/l
0.92
241
2429
10
90
1.12
0.05
2.2
1.5
264.30
329.61
mu/l
—
10
90
49
477
1.03
0.04
10.3
11.3
1.74
1.20
mmol/l
0.94
38
398
15
141
1.07
0.03
1.6
1.4
—
—
—
0
0
32
329
0.97
0.02
3.5
3.9
195.47
1144.18
ng/l
2.07
23
224
204
2031
1.02
0.02
3.5
3.7
—
—
—
0
0
215
2144
1.01
0.00
16.8
18.3
337.47
337.32
g/l
0.08
215
2129
14
142
0.99
0.00
3.9
1.8
—
—
—
0
0
21
209
1.01
0.00
1.3
1.3
2.76
1.68
u/ml
0.25
14
158
10
103
0.97
0.00
16.3
23.7
16.34
16.13
%
—
10
98
13
127
1.02
0.00
2.2
1.8
—
—
—
0
0
21
213
0.98
0.00
1.3
1.2
6.85
7.30
u/ml
0.04
15
165
5
52
0.96
0.00
1.2
1.9
—
—
—
0
0
0
8
0.00
-0.00
0.0
1.9
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.1
—
5.39
—
0
7
0
7
0.00
-0.00
0.0
4.1
—
9.89
—
0
7
0
7
0.00
-0.00
0.0
1.4
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.1
—
45.86
—
0
7
6
69
0.87
-0.00
7.7
4.7
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.8
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
8
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.1
—
581.00
—
0
7
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
9
0.00
-0.00
0.0
1.1
—
18.78
—
0
9
0
5
0.00
-0.00
0.0
10.8
—
11.26
—
0
5
5
56
0.89
-0.00
1.2
2.0
—
—
—
0
0
0
7
0.00
-0.00
0.0
4.1
—
4.64
—
0
7
0
7
0.00
-0.00
0.0
1.0
—
9.43
—
0
7
Mortality – FinRegistry
↥This endpoint is excluded (different definition than used in FinnGen).
Relationships between endpoints
↥Index endpoint: Q17_OTHER_CONGEN_MALFO_MALE_GENITAL_ORGANS – Other congenital malformations of male genital organs
GWS hits: -
This endpoint is excluded (different definition than used in FinnGen).