No definition available.
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
519870 |
1. Apply sex-specific ruleNone |
519870 |
2. Check conditionsNone |
519870 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
2 out of 7 registries used, show all original rules. |
264 |
4. Check minimum number of eventsNone |
264 |
5. Include endpointsNone |
264 |
6. Filter based on genotype QC (FinnGen only) |
250 |
Control definitions (FinnGen only)
- Control exclude
- D3_IMMUNEMECHANISM
Extra metadata
- Level in the ICD hierarchy
- 4
- First used in FinnGen datafreeze
- DF2
- Parent code in ICD-10
- D84
- Name in latin
- Deficientia systematis complementi
Similar endpoints
↥List of similar endpoints to
Defects in the complement system
based on the number of shared cases.
Similar with more cases:
- Other immunodeficiencies
- Immunodeficiencies
- Certain disorders involving the immune mechanism
- Diseases of the blood and blood-forming organs and certain disorders involving the immune mechanism
- Any operation in hilmo
Similar with less cases:
Case counts by codes
↥Summary Statistics
↥-FinRegistry-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | |||
| Whole population | 1516 | 980 | 531 |
| Only index persons | 1328 | 892 | 436 |
| Unadjusted period prevalence (%) | |||
| Whole population | 0.02 | 0.03 | 0.01 |
| Only index persons | 0.03 | 0.03 | 0.02 |
| Median age at first event (years) | |||
| Whole population | 36.99 | 41.26 | 28.98 |
| Only index persons | 40.75 | 42.47 | 37.23 |
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 250 | 189 | 61 |
| Unadjusted period prevalence (%) | 0.06 | 0.07 | 0.03 |
| Median age at first event (years) | 45.41 | 45.39 | 45.45 |
-FinRegistry-
Age distribution of first events
-FinnGen-
Age distribution of first events
-FinRegistry-
Year distribution of first events
-FinnGen-
Year distribution of first events
-FinRegistry-
Cumulative Incidence Function
-FinnGen-
Cumulative Incidence Function
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 264
- Matched controls
- 2640
TimeCodeWAS
↥TODO / Current known limitations:
- Only showing the top 500 codes, because showing all (sometimes 20k) makes the page too slow.
- Legend / how to read the glyphs.
- Proper column names.
- Show details (e.g. Fisher or Chi-square test, N cases and N controls) when clicking on a row.
- Explanation on the underlying data / how the TimeCodeWAS is done (e.g. matched cases / controls, eligibility).
- Download CSV not working.
- No filters and sorters.
- Limited amount of endpoints with TimeCodeWAS data.
- Cross-links to Risteys lab test pages for lab test codes.
D80.1 (45533001)
D80.3 (45595778)
4477-6 (3003245)
10634-4 (3023659)
D84.11 (2000501383)
D84.13 (2000501385)
D84.18 (2000501387)
D84.19 (2000501388)
D80.9 (45533002)
T78.3 (45551447)
D84.1 (45581336)
338 (2001600299)
50373000 (4177340)
60621009 (4245997)
SMOKING-2-3-0 (2002330113)
J06BA01 (21601256)
J06BA02 (21601257)
4485-9 (3000620)
4498-2 (3017766)
B06AC02 (40253604)
74520-8 (44817194)
D80.8 (45561935)
GD1AA (2001303617)
C01CA24 (21600303)
B02AA02 (21601036)
S01EA01 (21603673)
N02BE01 (21604344)
2465-3 (3005719)
2468-7 (3024139)
2466-1 (3027135)
2472-9 (3028026)
2467-9 (3028192)
207NI0002X (38003841)
29 (38004472)
93 (38004510)
1712009 (4062490)
J45.0 (45557624)
J45.9 (45562456)
J32.0 (45586667)
OMOP4822029 (45756810)
OMOP4822462 (581458)
OP (9202)
A07EA01 (21600653)
H02AB06 (21602734)
44 (38004484)
R03DC03 (21603356)
57782-5 (40760892)
66 (38004491)
11 (38004456)
Z2221 (2001311556)
R03AK06 (21603280)
26444-0 (3006315)
ZX120 (2001311495)
26484-6 (3001604)
26474-7 (3019198)
26449-9 (3013115)
4 (38004449)
19113-0 (3005322)
106 (44777669)
2458-8 (3007164)
26450-7 (3006504)
26485-3 (3019069)
30180-4 (3022096)
19875-4 (3001668)
20155-8 (3023550)
69970-2 (42868459)
69982-7 (42868471)
69983-5 (42868472)
26478-8 (3002030)
R03BB04 (21603296)
OMOP4822458 (581477)
69738-3 (42870588)
50949-7 (3029937)
R06AX27 (21603526)
19926-5 (3011505)
19870-5 (3020158)
20150-9 (3024653)
751-8 (3013650)
26511-6 (3018010)
J01AA02 (21602800)
R06AE07 (21603497)
N02BF02 (955152)
ER (9203)
21 (8717)
50554-5 (3029287)
60026-2 (40763086)
4537-7 (3013707)
715-3 (3021589)
J02AC01 (21603080)
55429-5 (40758558)
22 (8756)
R03BA02 (21603285)
J01MA12 (21603019)
2514-8 (3035350)
5802-4 (3021601)
14631-6 (3006140)
25428-4 (3009261)
29953-7 (3037522)
R50.9 (45582716)
6768-6 (3035995)
WZC30 (2001310891)
26515-7 (3007461)
X59 (45756412)
718-7 (3000963)
28539-5 (3035941)
30428-7 (3024731)
26453-1 (3026361)
30383-4 (3000850)
20570-8 (3009542)
1988-5 (3020460)
OMOP5117446 (33004)
H02AB09 (21602737)
26464-8 (3010813)
C03CA01 (21601518)
J01FA06 (21602974)
UJF32 (2001305029)
1995-0 (3021347)
UJD10 (2001304788)
H02AB04 (21602732)
26 (38004469)
R03AC02 (21603256)
J18.9 (45601123)
OMOP4822461 (32036)
1751-7 (3024561)
TPH04 (2001309597)
113016006 (4010399)
A12AA20 (21600872)
Z3226 (2001311560)
14804-9 (3022250)
J45 (45596282)
WX408 (2001310808)
600-7 (3023368)
10 (38004455)
51483-6 (3030467)
R06.0 (45558449)
DM1QA (2001301761)
ZXD10 (2001311387)
JN3AE (2001305555)
251B00000X (38004193)
87829-8 (36304419)
30391-7 (3002582)
J01MA02 (21603009)
A03FA01 (21600484)
2157-6 (3007220)
J01CA04 (21602823)
J01DB01 (21602870)
ZXE00 (2001311394)
A02BC01 (21600096)
25 (38004468)
ZXE10 (2001311401)
2601-3 (3012095)
2823-3 (3023103)
14682-9 (3020564)
2951-2 (3019550)
R03BA05 (21603288)
J01CR02 (21602863)
D07AB30 (21602118)
D07XB30 (21602188)
J01.0 (45601112)
2753-2 (3018418)
14338-8 (3013742)
30248-9 (3015399)
TDM10 (2001301819)
J20.9 (45562445)
LabWAS
↥Mortality – FinRegistry
↥Association
Association between endpoint D3_COMPLEMENTDEF and mortality.
Females
No dataMales
No dataMortality risk
Mortality risk for people of age
years, who have D3_COMPLEMENTDEF.| N-year risk | Females | Males |
|---|---|---|
| 1 | No data | No data |
| 5 | No data | No data |
| 10 | No data | No data |
| 15 | No data | No data |
| 20 | No data | No data |
Relationships between endpoints
↥Index endpoint: D3_COMPLEMENTDEF – Defects in the complement system
GWS hits: 1