Benign neoplasm: Other specified/unspecified intrathoracic organs (+ respiratory system NOS of Icd-9)

CD2_BENIGN_INTRATHORACIC_NOS

No definition available.

Endpoint definition

↥

Report an error or suggest an improvement for this endpoint codes

Endpoint definition steps	FinnGen
Phenotype data	557745
1. Apply sex-specific rule None	557745
2. Check conditions None	557745
3. Check pre-conditions, main-only, mode, registry filters Registry filters: Hospital discharge: ICD-10 — D15.7&, D15.9& Hospital discharge: ICD-9 — 212[8-9]\|2124 Hospital discharge: ICD-8 — 2124 Cause of death: ICD-10 — D15.7&, D15.9& Cause of death: ICD-9 — 212[8-9]\|2124 Cause of death: ICD-8 — 2124 2 out of 7 registries used, show all original rules.	106
4. Check minimum number of events None	106
5. Include endpoints None	106
6. Filter based on genotype QC (FinnGen only)	92

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy: 3
First used in FinnGen datafreeze: DF2

NAME	CD2_BENIGN_INTRATHORACIC_NOS
CONTROL_EXCLUDE
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	D15[7\|9]
HD_ICD_9	212[8-9]\|2124
HD_ICD_8	2124
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	D15[7\|9]
COD_ICD_9	212[8-9]\|2124
COD_ICD_8	2124
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

Similar endpoints

↥

List of similar endpoints to Benign neoplasm: Other specified/unspecified intrathoracic organs (+ respiratory system NOS of Icd-9) based on the number of shared cases.

Similar with more cases:

Similar with less cases:

None

Case counts by codes

↥

FinnGen case counts by registry codes:

Upset plot

Full data table

Summary Statistics

↥

-FinRegistry-

Key figures

	All	Female	Male
Number of individuals
Whole population	643	324	311
Only index persons	503	282	221
Unadjusted period prevalence (%)
Whole population	0.01	0.01	0.01
Only index persons	0.01	0.01	0.01
Median age at first event (years)
Whole population	53.15	54.00	51.91
Only index persons	50.65	52.73	48.01

-FinnGen-

Key figures

	All	Female	Male
Number of individuals	92	44	48
Unadjusted period prevalence (%)	0.02	0.02	0.02
Median age at first event (years)	53.56	53.46	53.65

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

No data

-FinnGen-

Cumulative Incidence Function

No data

CodeWAS

↥

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log₁₀(p-value) ≥ 6.

Matched cohort

Matched cases
94: Matched controls
940

Code

Vocabulary

Description

Odds Ratio

-log₁₀(p)

N matched cases

N matched controls

D15.9

ICD-10 Finland

Benign neoplasm: Intrathoracic organ, unspecified

+∞

44.3

D15.7

ICD-10 Finland

Benign neoplasm: Other specified intrathoracic organs

+∞

43.1

R91

ICD-10 Finland

Abnormal findings on diagnostic imaging of lung

6.1

14.4

GAE06

NOMESCO Finland

Excision of lesion of chest wall

+∞

9.5

D15.1

ICD-10 Finland

Benign neoplasm: Heart

+∞

7.4

UGC12

NOMESCO Finland

Flexible bronchoscopy

4.8

7.2

21240

ICD-8 Finland

Benign neoplasm of respiratory system, Pleura

+∞

6.3

2129X

ICD-9 Finland

Benign neoplasm of respiratory and intrathoracic organs, Site unspecified

+∞

6.3

D15.2

ICD-10 Finland

Benign neoplasm: Mediastinum

+∞

6.3

GD1UA

NOMESCO Finland

Thorax X-ray examination outside radiological department

3.4

6.2

LabWAS

↥

N Cases

N Controls

-log₁₀(p)

cases

controls

cases

controls

unit

-log₁₀(p)

N cases

N controls

(3017732) Neutrophils [#/volume] in Blood

2.92

4.29

3.7

3.4

3.88

6.94

e9/l

0.64

(40763082) Lactate dehydrogenase [Enzymatic activity/volume] in Pleural fluid by Lactate to pyruvate reaction

10.67

4.08

1.9

1.3

331.57

286.29

u/l

—

(3044640) Blood type and Crossmatch panel - Blood

263

2.36

4.02

2.3

2.5

—

(3003434) Protein [Mass/volume] in Pleural fluid

9.33

3.84

2.4

1.8

36.57

29.24

g/l

—

(3003458) Phosphate [Moles/volume] in Serum or Plasma

102

2.66

3.66

5.7

8.0

1.08

1.05

mmol/l

0.19

(3016431) Calcium.ionized [Moles/volume] adjusted to pH 7.4 in Serum or Plasma

391

2.07

2.93

8.8

7.6

1.21

mmol/l

0.08

329

(3013139) Helicobacter pylori Ag [Presence] in Stool

3.64

2.92

1.2

—

(3001079) Blood group antibody screen [Presence] in Serum or Plasma

355

2.04

2.88

2.8

2.9

—

estimate

—

(3006093) Chlamydia trachomatis DNA [Presence] in Specimen by NAA with probe detection

3.48

2.61

2.0

1.6

—

(3036428) Adenosine deaminase [Enzymatic activity/volume] in Pleural fluid

7.46

2.58

1.8

1.3

9.20

10.86

u/l

—

(3011371) Neisseria gonorrhoeae DNA [Presence] in Specimen by NAA with probe detection

3.71

2.56

1.8

1.6

—

(3012441) Differential panel - Pleural fluid

6.52

2.40

3.0

1.8

—

(40768806) Pleura Pathology biopsy report

6.52

2.40

2.4

2.3

—

(3010421) pH of Blood

3.70

2.33

5.4

3.9

7.42

7.41

—

(3032080) INR in Blood by Coagulation assay

390

1.82

2.12

19.2

14.0

1.22

1.26

inr

0.26

315

(46236098) ABO and Rh group [Type] in Blood by Confirmatory method

186

1.90

2.06

2.3

2.5

—

(3013826) Glucose [Moles/volume] in Serum or Plasma

476

1.80

1.94

5.5

4.9

6.52

6.63

mmol/l

0.15

449

(3020630) Protein [Mass/volume] in Serum or Plasma

2.32

1.93

1.9

3.1

65.14

66.89

g/l

0.38

(3022313) Gas panel - Capillary blood

2.82

1.92

3.1

5.1

—

(3021589) Normoblasts [#/volume] in Blood

345

1.72

1.81

18.7

12.0

0.00

e9/l

0.55

286

(40760892) CBC W Ordered Manual Differential panel - Blood

178

1.82

1.76

5.2

5.0

—

(3029080) Hemoglobin [Entitic mass] in Reticulocytes

4.00

1.74

2.2

1.8

26.00

32.00

—

(3018010) Neutrophils/Leukocytes in Blood

361

1.67

1.65

6.4

6.0

60.12

57.69

0.64

343

(40768804) Tissue Pathology biopsy report

325

1.67

1.61

2.4

2.0

—

(40769539) Bacteria identified based on 16S rRNA gene [Identifier] in Specimen by Sequencing

3.13

1.61

1.2

1.4

—

(3005702) Mycobacterium sp identified in Specimen by Organism specific culture

3.46

1.54

1.0

1.6

—

(1616796) Gas panel - Central venous blood

3.24

1.45

4.4

3.5

—

(40768443) Skin Pathology biopsy report

2.52

1.42

1.3

1.2

—

(3003785) Carcinoembryonic Ag [Mass/volume] in Serum or Plasma

1.91

1.39

5.0

4.0

2.27

82.66

ug/l

0.56

(46235355) HIV 1 and 2 tests - Meaningful Use set

123

1.80

1.38

1.9

1.7

—

(3020427) Coagulation factor X inhibitor [Units/volume] in Platelet poor plasma by Coagulation assay

3.05

1.37

2.8

3.2

0.29

0.36

iu/ml

—

(3019800) Troponin T.cardiac [Mass/volume] in Serum or Plasma

337

1.57

1.33

5.2

4.3

21.53

50.83

ng/l

1.28

247

(3023368) Bacteria identified in Blood by Culture

237

1.60

1.30

4.1

4.2

—

(3001604) Monocytes [#/volume] in Blood

406

1.56

1.29

6.9

6.1

0.59

e9/l

0.00

354

(3044254) Respiratory syncytial virus RNA [Presence] in Specimen by NAA with probe detection

2.49

1.26

1.2

1.9

—

(3006315) Basophils [#/volume] in Blood

408

1.55

1.25

6.8

6.1

0.03

0.04

e9/l

0.56

355

(4035726) Immunohistochemistry procedure

1.86

1.24

1.2

1.3

—

(3016293) Bicarbonate [Moles/volume] in Serum or Plasma

2.12

1.21

6.7

7.5

25.94

24.92

mmol/l

—

(3007220) Creatine kinase [Enzymatic activity/volume] in Serum or Plasma

250

1.56

1.20

2.0

2.2

146.15

191.60

u/l

0.54

238

(42870588) Differential panel, method unspecified - Blood

271

1.53

1.14

5.8

6.1

—

(3002256) Pathology report gross observation

106

1.74

1.12

1.4

1.2

—

(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection

455

1.50

1.11

3.0

2.8

—

(3003327) Ova and parasites identified in Stool by Light microscopy

2.46

1.10

3.2

1.1

—

(3028626) Oxygen [Partial pressure] in Capillary blood

2.46

1.10

2.6

5.2

9.70

7.96

kpa

—

(3014162) Mycobacterium tuberculosis DNA [Presence] in Specimen by NAA with probe detection

2.21

1.08

5.1

2.5

—

(3019050) Tissue transglutaminase IgA Ab [Units/volume] in Serum

176

1.57

1.05

1.2

1.3

0.70

1.06

u/ml

—

(3025941) Bacteria identified in Stool by Culture

1.97

1.04

1.2

1.4

—

(3029187) Natriuretic peptide.B prohormone N-Terminal [Mass/volume] in Serum or Plasma

277

1.49

1.01

4.2

4.0

733.02

1269.66

ng/l

1.45

222

(3019902) Methicillin resistant Staphylococcus aureus [Presence] in Specimen by Organism specific culture

1.75

0.94

3.6

3.8

—

(46235759) Influenza virus B RNA [Presence] in Nasopharynx by NAA with probe detection

2.22

0.93

1.2

2.3

—

(3042936) Bacteria identified in Isolate by Culture

121

1.60

0.91

2.3

1.8

—

(3019309) Folate [Moles/volume] in Red Blood Cells

139

1.56

0.89

2.1

1.6

1281.21

1265.21

nmol/l

0.03

105

(3000492) Spirometry study

1.70

0.86

1.5

—

(4010399) Spirometry for bronchospasm with prolonged evaluation after bronchodilator

1.74

0.86

1.6

1.3

—

(3016771) Amylase [Enzymatic activity/volume] in Serum or Plasma

266

1.44

0.86

2.9

2.4

55.62

57.51

u/l

0.16

246

(3014576) Chloride [Moles/volume] in Serum or Plasma

115

1.58

0.84

5.2

5.3

105.41

104.10

mmol/l

0.69

115

(3029937) Albumin [Presence] in Urine by Test strip

260

1.41

0.80

5.2

4.1

0.00

0.02

estimate

0.49

(3048816) Calcium.ionized [Moles/volume] adjusted to pH 7.4 in Blood

1.78

0.79

9.1

5.1

1.22

mmol/l

—

(3012477) Bordetella pertussis DNA [Presence] in Specimen by NAA with probe detection

2.24

0.77

1.0

1.3

—

(36305247) Microscopic observation [Identifier] in Isolate by Gram stain

2.14

0.76

1.2

1.3

—

(3003510) Neisseria gonorrhoeae DNA [Presence] in Urine by NAA with probe detection

1.61

0.72

1.4

1.6

—

(36031861) Influenza virus A and B and SARS-CoV-2 (COVID-19) and Respiratory syncytial virus RNA panel - Respiratory system specimen by NAA with probe detection

1.76

0.71

1.1

1.9

—

(3002482) Mycoplasma pneumoniae DNA [Presence] in Specimen by NAA with probe detection

1.90

0.69

1.0

1.3

—

(37019628) Gastrointestinal bacterial pathogens panel - Stool by NAA with probe detection

1.83

0.67

1.2

1.6

—

(3015235) Bicarbonate [Moles/volume] in Capillary blood

1.83

0.67

2.8

4.1

24.56

23.90

mmol/l

—

(40761511) CBC panel - Blood by Automated count

791

0.70

0.65

23.2

15.3

—

(3044938) Influenza virus A RNA [Presence] in Specimen by NAA with probe detection

132

1.45

0.63

2.0

1.9

—

(3005322) IgE [Units/volume] in Serum or Plasma

1.62

0.62

2.1

1.2

328.29

440.72

u/ml

—

(3026910) Gamma glutamyl transferase [Enzymatic activity/volume] in Serum or Plasma

525

0.76

0.62

4.3

3.3

31.54

54.52

u/l

4.11

501

(3051387) C reactive protein [Mass/volume] in Capillary blood

0.00

0.61

0.0

6.3

—

31.06

—

(3017766) Complement C4 [Mass/volume] in Serum or Plasma

0.00

0.60

0.0

1.4

—

0.24

—

(43534045) MCM6 gene c.-13910C>T and -13915T>G [Identifier] in Blood or Tissue by Molecular genetics method Nominal

1.62

0.55

1.0

—

(3051552) Clostridioides difficile toxin genes [Presence] in Stool by NAA with probe detection

1.58

0.55

1.6

1.5

—

(3051714) Fibrin D-dimer FEU [Mass/volume] in Platelet poor plasma

182

1.35

0.53

2.2

1.7

1.39

1.73

mg/l

0.22

145

(40761536) Microorganisms panel - Urine sediment

1.42

0.52

6.9

3.7

—

(3024950) Chlamydia trachomatis DNA [Presence] in Urine by NAA with probe detection

1.55

0.52

1.5

1.7

—

(3012516) Albumin [Mass/volume] in Urine

250

1.29

0.49

3.4

3.5

33.62

63.65

mg/l

0.86

167

(3000494) Fungus identified in Specimen by Culture

103

1.42

0.48

1.4

—

(3041096) Erythrocytes [Presence] in Urine by Automated

252

1.28

0.46

4.2

3.5

0.00

0.01

estimate

0.49

(3013650) Neutrophils [#/volume] in Blood by Automated count

457

1.25

0.46

9.9

10.5

4.19

4.07

e9/l

0.17

395

(3003694) ABO and Rh group [Type] in Blood

205

1.30

0.46

1.5

1.4

—

(3011960) Natriuretic peptide B [Mass/volume] in Serum or Plasma

1.50

0.44

5.3

2.8

153.13

144.62

ng/l

—

(3019284) Hepatitis B virus surface Ag [Presence] in Serum

105

1.39

0.44

1.6

1.5

—

(3040853) Adenovirus DNA [Identifier] in Specimen by NAA with probe detection

1.65

0.44

1.0

1.4

—

(3048689) Calprotectin [Mass/mass] in Stool

1.39

0.42

1.7

2.2

113.00

130.85

ug/g

—

(3009041) Cardiolipin IgG Ab [Units/volume] in Serum by Immunoassay

0.00

0.41

0.0

1.3

—

3.71

—

(3020287) Protein C actual/normal in Platelet poor plasma by Coagulation assay

0.00

0.41

0.0

1.3

—

110.60

—

(21494670) JAK2 gene exon 14 targeted mutation analysis in Blood or Tissue by Molecular genetics method

0.00

0.41

0.0

1.1

—

(3015816) F5 gene p.Arg506Gln [Presence] in Blood or Tissue by Molecular genetics method

0.00

0.41

0.0

1.2

—

(42870365) C reactive protein [Mass/volume] in Blood by High sensitivity method

0.00

0.41

0.0

1.9

—

20.86

—

(3018418) pH of Serum or Plasma

246

1.26

0.41

7.0

4.1

7.39

7.40

0.38

179

(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip

333

1.24

0.40

5.2

4.0

0.00

0.04

estimate

0.49

(3052851) Hemolysis interference index of Serum or Plasma

0.00

0.40

0.0

2.8

—

2.38

—

(3023602) Cholesterol in HDL [Moles/volume] in Serum or Plasma

749

0.79

0.38

5.2

1.44

mmol/l

0.01

687

(3024135) Streptococcus.beta-hemolytic [Presence] in Throat by Organism specific culture

134

0.72

0.38

1.3

1.5

—

(3001784) Prostate Specific Ag Free/Prostate specific Ag.total in Serum or Plasma

240

0.79

0.36

3.1

5.1

22.37

21.66

0.09

125

(3035941) MCH [Entitic mass]

831

0.75

0.36

35.9

25.2

29.87

30.31

1.39

825

(3010813) Leukocytes [#/volume] in Blood

831

0.75

0.36

36.1

25.2

6.71

6.78

e9/l

0.12

813

(3026361) Erythrocytes [#/volume] in Blood

831

0.75

0.36

36.1

25.2

4.41

4.50

e12/l

1.01

812

(3009261) Glucose [Presence] in Urine by Test strip

436

1.21

0.35

5.2

4.2

0.00

estimate

-0.00

(3007164) IgA [Mass/volume] in Serum or Plasma

165

1.27

0.35

1.6

1.5

2.01

2.51

g/l

0.81

(3018095) Leukocytes [#/volume] in Urine

328

1.21

0.34

3.1

3.8

443.29

88.49

e6/l

0.59

232

(3007628) Bicarbonate [Moles/volume] standard in Venous blood

1.36

0.34

9.0

3.4

25.62

24.15

mmol/l

—

(3024731) MCV [Entitic mean volume] in Red Blood Cells

830

0.76

0.34

36.0

25.2

90.25

91.07

1.02

824

(3007461) Platelets [#/volume] in Blood

830

0.76

0.34

36.2

25.3

249.62

248.06

e9/l

0.08

816

(3019832) Treponema pallidum Ab [Presence] in Serum

1.32

0.33

1.3

1.6

—

(40758558) Short blood count panel - Blood

252

1.22

0.33

8.5

6.5

—

(3021879) Hepatitis B virus core Ab [Presence] in Serum

1.32

0.31

1.1

1.6

—

(3021601) Nitrite [Presence] in Urine by Test strip

431

1.18

0.29

5.3

4.1

0.00

estimate

-0.00

(40768797) Stomach Pathology biopsy report

113

1.28

0.28

1.2

1.3

—

(3017143) Hepatitis C virus Ab [Presence] in Serum

1.32

0.27

1.9

1.6

—

(3019900) Cholesterol [Moles/volume] in Serum or Plasma

751

0.82

0.27

5.4

5.3

4.49

4.57

mmol/l

0.23

694

(3035350) Ketones [Presence] in Urine by Test strip

436

1.16

0.24

5.3

4.1

0.00

17.28

estimate

0.49

(3001308) Cholesterol in LDL [Moles/volume] in Serum or Plasma

767

0.83

0.23

6.0

6.1

2.62

2.68

mmol/l

0.15

709

(3020891) Body temperature

1.23

0.22

2.6

2.8

36.84

36.90

°c

—

(3026008) Bacteria identified in Urine by Culture

251

1.16

0.22

4.3

3.3

—

(3027544) Mycobacterium sp identified in Sputum by Organism specific culture

0.00

0.21

0.0

4.5

—

(3029634) Reagin Ab [Titer] in Serum by VDRL

0.00

0.21

0.0

2.1

—

(3025023) Rhinovirus RNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.6

—

(40759850) Jo-1 extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.21

0.0

1.5

—

(4146454) Self-monitoring of blood glucose

0.00

0.21

0.0

1.7

—

(3016881) Enterovirus RNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.6

—

(40759836) Histone Ab [Presence] in Serum by Immunoblot

0.00

0.21

0.0

1.6

—

(3028369) Herpes simplex virus 1+2 DNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.4

—

(3019230) Fractional oxyhemoglobin in Venous blood

0.00

0.21

0.0

2.1

—

60.13

—

(40759812) SCL-70 extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.21

0.0

1.5

—

(3026389) Candida sp identified in Specimen by Organism specific culture

0.00

0.21

0.0

1.2

—

(40768795) Lymph node Pathology biopsy report

0.00

0.21

0.0

1.1

—

(3019539) Treponema pallidum Ab [Titer] in Serum by Hemagglutination

0.00

0.21

0.0

1.9

—

(4268621) Lupus anticoagulant assay

0.00

0.21

0.0

2.2

—

(4195642) Thrombophilia screening test

0.00

0.21

0.0

1.2

—

(3043362) Influenza virus B Ag [Presence] in Nasopharynx by Immunoassay

0.00

0.20

0.0

1.6

—

(3046524) Influenza virus A Ag [Presence] in Nasopharynx by Immunoassay

0.00

0.20

0.0

1.6

—

(3006217) Methemoglobin/Hemoglobin.total in Arterial blood

1.21

0.20

6.0

8.4

0.60

0.67

—

(3028653) Carboxyhemoglobin/Hemoglobin.total in Arterial blood

1.19

0.20

6.0

7.8

1.05

1.39

—

(3004410) Hemoglobin A1c/Hemoglobin.total in Blood

725

0.86

0.19

6.9

6.8

38.47

39.80

mmol/mol

0.74

678

(43054914) Glucose tolerance 2 hours panel - Serum or Plasma

1.25

0.19

1.3

1.8

—

(3004588) Protein electrophoresis panel - Serum or Plasma

1.18

0.18

1.7

2.9

—

(3043924) Respiratory syncytial virus RNA [Identifier] in Specimen by NAA with probe detection

101

1.22

0.17

2.2

1.7

—

(3000991) Gas panel - Venous blood

1.17

0.17

5.0

7.9

—

(3003031) Transferrin.carbohydrate deficient.disialo/Transferrin.total in Serum or Plasma

1.17

0.16

1.8

1.9

1.40

1.54

—

(3025839) Triglyceride [Moles/volume] in Serum or Plasma

324

0.89

0.15

1.9

2.0

1.24

1.32

mmol/l

0.27

268

(3022145) Colonoscopy Study observation

1.11

0.15

1.6

1.2

—

(3019977) pH of Arterial blood

1.19

0.14

8.3

7.0

7.39

7.42

—

(3020682) Albumin/Creatinine [Ratio] in Urine

259

1.12

0.13

5.1

4.1

3.40

8.99

mg/mmol

1.28

169

(3030467) Casts [#/volume] in Urine by Automated count

240

1.12

0.13

2.7

2.9

0.54

0.39

e6/l

0.17

174

(40763571) Iron/Transferrin [Ratio] in Serum or Plasma

133

1.15

0.13

4.7

3.0

16.55

21.06

1.29

123

(3018251) Fasting glucose [Moles/volume] in Serum or Plasma

739

0.89

0.13

5.4

5.84

6.03

mmol/l

0.72

681

(43054903) Holo-transcobalamin II [Moles/volume] in Serum

349

1.10

0.12

2.0

2.1

89.23

95.39

pmol/l

0.35

167

(3019550) Sodium [Moles/volume] in Serum or Plasma

784

1.14

0.11

26.6

19.5

139.66

139.72

mmol/l

0.07

774

(3020564) Creatinine [Moles/volume] in Serum or Plasma

815

0.88

0.11

29.0

21.6

83.82

79.22

umol/l

0.28

808

(3041942) Cyclic citrullinated peptide Ab [Units/volume] in Serum

125

1.14

0.11

1.4

1.5

27.12

19.95

u/ml

—

(3023103) Potassium [Moles/volume] in Serum or Plasma

786

1.12

0.09

26.8

19.7

3.98

3.99

mmol/l

0.24

775

(36660697) Celiac disease serology panel - Serum

0.82

0.08

1.4

1.2

—

(3033319) Streptococcus pyogenes Ag [Presence] in Throat

0.77

0.08

1.0

1.4

—

(3029879) Epithelial cells.squamous [#/volume] in Urine by Automated count

133

0.89

0.08

1.9

2.9

2.83

2.84

e6/l

—

(3045783) Sodium and Potassium panel [Moles/volume] - Serum or Plasma

1.05

0.07

13.0

7.2

—

(3018006) Microscopic observation [Identifier] in Cervix by Cyto stain.thin prep

110

0.90

0.05

1.6

1.4

—

(42868674) Cholesterol in HDL/Cholesterol.total [Molar ratio] in Serum or Plasma

108

0.92

0.03

5.3

4.5

42.60

31.97

—

(1761868) Lipid panel - Serum or Plasma

281

1.05

0.03

3.3

3.5

—

(3002582) Erythrocytes [#/volume] in Urine

291

1.05

0.03

2.8

3.1

13.12

56.92

e6/l

1.22

224

(3037467) Urinalysis macro (dipstick) panel - Urine

549

0.96

0.02

5.5

4.4

—

(3015736) pH of Urine

343

1.03

0.01

4.6

3.9

5.98

6.22

0.62

188

(3038288) Influenza virus B RNA [Presence] in Specimen by NAA with probe detection

1.07

0.01

2.0

1.8

—

(3021614) Rheumatoid factor [Units/volume] in Serum or Plasma

144

1.05

0.00

1.3

1.4

115.20

32.65

iu/ml

—

(3020059) Calcium [Moles/volume] corrected for albumin in Serum or Plasma

168

1.01

0.00

3.1

2.8

2.47

2.46

mmol/l

0.36

147

(3031040) Bacteria [#/volume] in Urine by Automated count

522

0.99

0.00

5.6

4.5

—

44.91

—

(3013512) EKG study

286

1.02

0.00

5.6

3.9

—

(3021125) Hepatitis C virus RNA [Presence] in Serum or Plasma by NAA with probe detection

0.00

-0.00

0.0

1.9

—

(3037534) Parathyrin related protein [Mass/volume] in Serum or Plasma

0.00

-0.00

0.0

1.5

—

61.27

—

(1001509) Gas and Carbon monoxide and Electrolytes panel - Arterial blood

0.00

-0.00

0.0

1.5

—

(3020460) C reactive protein [Mass/volume] in Serum or Plasma

760

1.00

-0.00

24.4

17.0

15.74

23.69

mg/l

3.30

633

(3025634) Parainfluenza virus 1 RNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

2.4

—

(21493195) Respiratory pathogens DNA and RNA tested for in Respiratory system specimen by NAA with probe detection

0.00

-0.00

0.0

2.2

—

(3019420) Tryptase [Mass/volume] in Serum or Plasma

0.00

-0.00

0.0

1.4

—

8.22

—

(40764999) Glomerular filtration rate [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (CKD-EPI)/1.73 sq M

740

1.00

-0.00

21.3

16.4

79.37

79.47

ml/min/173m2

0.01

685

(37208534) Antinuclear antibody arbitrary concentration in serum

0.00

-0.00

0.0

1.0

—

(3017569) Oxygen content in Arterial blood

0.00

-0.00

0.0

2.8

—

13.85

—

(40765096) Chromosome analysis panel by Banding

0.00

-0.00

0.0

1.2

—

(40766800) Mycobacterium tuberculosis stimulated gamma interferon release by CD4+ T-cells [Units/volume] corrected for background in Blood

0.00

-0.00

0.0

1.0

—

(3010380) Borrelia burgdorferi IgG Ab [Units/volume] in Cerebral spinal fluid

0.00

-0.00

0.0

1.0

—

(37020445) Astrovirus RNA [Presence] in Stool by NAA with probe detection

0.00

-0.00

0.0

2.0

—

(40759849) Smith extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

-0.00

0.0

1.7

—

(3034426) Prothrombin time (PT)

0.00

-0.00

0.0

1.4

—

28.60

—

(37021247) Adenovirus 40+41 DNA [Presence] in Stool by NAA with probe detection

0.00

-0.00

0.0

2.0

—

(46235128) Lupus anticoagulant aPTT and dRVVT screening panel W Reflex

0.00

-0.00

0.0

1.2

—

(21494815) CD4 cells/Lymphocytes in Specimen

0.00

-0.00

0.0

2.6

—

39.10

—

(3006262) Parainfluenza virus 3 RNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

2.4

—

(3011166) Borrelia burgdorferi Ab [Presence] in Cerebral spinal fluid

0.00

-0.00

0.0

1.0

—

(3047007) Chlamydophila sp Ab [Presence] in Serum

0.00

-0.00

0.0

1.1

—

(3000108) Respiratory syncytial virus B RNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

2.4

—

(3002079) Sodium [Moles/time] in 24 hour Urine

0.00

-0.00

0.0

1.0

—

134.33

—

(3053028) Streptococcus sp identified in Specimen by Organism specific culture

0.00

-0.00

0.0

1.0

—

(42869457) Rotavirus RNA [Identifier] in Stool by NAA with probe detection

0.00

-0.00

0.0

2.0

—

(3023410) Appearance of Cerebral spinal fluid

0.00

-0.00

0.0

1.1

—

(3019897) Erythrocyte [DistWidth] in Red Blood Cells by Automated count

0.00

-0.00

0.0

1.4

—

13.40

—

(3000855) Microscopic observation [Identifier] in Vaginal fluid by Gram stain

0.00

-0.00

0.0

1.2

—

(3012202) Varicella zoster virus DNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

1.3

—

(3050898) Methicillin resistant Staphylococcus aureus [Presence] in Genital specimen by Organism specific culture

0.00

-0.00

0.0

1.7

—

(3014271) Vancomycin [Susceptibility]

0.00

-0.00

0.0

2.2

—

(3018333) Ribosomal P Ab [Presence] in Serum

0.00

-0.00

0.0

1.6

—

(40759843) Sjogrens syndrome-A extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

-0.00

0.0

1.7

—

(40759842) Ribonucleoprotein extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

-0.00

0.0

1.6

—

(3005156) Respiratory syncytial virus A RNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

2.4

—

(3049539) Genetic diseases [Identifier] in Blood or Tissue by FISH Nominal

0.00

-0.00

0.0

1.1

—

(3014326) Insulin-like growth factor-I [Moles/volume] in Serum or Plasma

0.00

-0.00

0.0

2.0

—

26.28

—

(3011648) Oxygen content in Venous blood

0.00

-0.00

0.0

2.0

—

8.93

—

(40759844) Sjogrens syndrome-B extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

-0.00

0.0

1.7

—

(37020957) Sapovirus genogroups I+II+IV+V RNA [Presence] in Stool by NAA with probe detection

0.00

-0.00

0.0

2.0

—

(3007853) Bacteria identified in Skin by Aerobe culture

0.95

-0.00

1.8

1.6

—

(3010503) CD19 cells [#/volume] in Blood

0.00

-0.00

0.0

1.9

—

204.86

—

(21491868) Cryoglobulin [Mass/volume] in Serum

0.00

-0.00

0.0

1.0

—

(3000924) Streptococcus pyogenes [Presence] in Throat by Organism specific culture

0.00

-0.00

0.0

1.3

—

(40761535) Cells panel - Urine sediment

0.90

-0.00

7.2

4.0

—

(3042975) Streptococcus sp identified in Isolate by Organism specific culture

0.00

-0.00

0.0

1.0

—

(3019060) Gas panel - Arterial blood

0.87

-0.00

6.2

3.7

—

(3016436) Lactate dehydrogenase [Enzymatic activity/volume] in Serum or Plasma

0.00

-0.00

0.0

3.0

—

222.00

—

(3040363) Hepatitis A virus IgG Ab [Presence] in Serum by Immunoassay

0.00

-0.00

0.0

1.0

—

(40760543) Extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

-0.00

0.0

1.1

—

(3038297) Parainfluenza virus 4 RNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

2.4

—

(3026470) Cobalt [Mass/volume] in Blood

0.00

-0.00

0.0

2.6

—

3.76

—

(3036481) Cortisol [Moles/volume] in Serum or Plasma

0.95

-0.00

2.3

2.1

348.75

383.37

nmol/l

—

(3034988) Calcium [Moles/volume] in Capillary blood

0.00

-0.00

0.0

1.8

—

1.20

—

(3014973) Borrelia burgdorferi IgM Ab [Units/volume] in Cerebral spinal fluid

0.00

-0.00

0.0

1.0

—

(3049506) Microalbumin [Mass/time] in Urine collected for unspecified duration

0.00

-0.00

0.0

2.7

—

(3009876) Amylase isoenzyme 3 panel - Serum or Plasma

0.00

-0.00

0.0

1.2

—

(40760847) Basement membrane Ab [Titer] in Serum by Immunofluorescence

0.00

-0.00

0.0

1.3

—

(42870308) Desmosome IgG Ab [Titer] in Serum by Immunofluorescence

0.00

-0.00

0.0

1.0

—

(3012158) Parainfluenza virus 2 RNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

2.4

—

Mortality – FinRegistry

↥

Association

Association between endpoint CD2_BENIGN_INTRATHORACIC_NOS and mortality.

Females

No data

Males

No data

Mortality risk

Mortality risk for people of age

years, who have CD2_BENIGN_INTRATHORACIC_NOS.

N-year risk	Females	Males
1	No data	No data
5	No data	No data
10	No data	No data
15	No data	No data
20	No data	No data

Relationships between endpoints

↥

Index endpoint: CD2_BENIGN_INTRATHORACIC_NOS – Benign neoplasm: Other specified/unspecified intrathoracic organs (+ respiratory system NOS of Icd-9)

GWS hits: -

Endpoint

Case Overlap

Survival Analysis

Genetic Correlations

Genetic Signals

N (Jaccard index)

HR [CI]

rg [CI]

Hits

Coloc Hits

FinRegistry

FinnGen

FinRegistry

FinnGen

Loading data

Benign neoplasm: Other specified/unspecified intrathoracic organs (+ respiratory system NOS of Icd-9)

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

1. Apply sex-specific rule

2. Check conditions

3. Check pre-conditions, main-only, mode, registry filters

4. Check minimum number of events

5. Include endpoints

6. Filter based on genotype QC (FinnGen only)

Similar endpoints

Case counts by codes

Summary Statistics

-FinRegistry-

Key figures

-FinnGen-

Key figures

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

CodeWAS

Matched cohort

LabWAS

Mortality – FinRegistry

Association

Females

Males

Mortality risk

Relationships between endpoints