Abnormal findings in peritoneal fluid saliva

R18_ABNORMAL_FINDI_PERITONEAL_FLUID_SALIVA

No definition available.

Endpoint definition

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Report an error or suggest an improvement for this endpoint codes

Endpoint definition steps	FinnGen
Phenotype data	557745
1. Apply sex-specific rule None	557745
2. Check conditions None	557745
3. Check pre-conditions, main-only, mode, registry filters Registry filters: Hospital discharge: ICD-10 — R85 Cause of death: ICD-10 — R85 2 out of 7 registries used, show all original rules.	161
4. Check minimum number of events None	161
5. Include endpoints None	161
6. Filter based on genotype QC (FinnGen only)	139

Control definitions (FinnGen only)

Control exclude: R18_ABNORMAL_FINDI_EXAMI_OTHER_BODY_FLUIDS_SUBST_TISSU_WO_DIAGNOSIS

Extra metadata

Level in the ICD hierarchy: 3
First used in FinnGen datafreeze: DF4
Parent code in ICD-10: R8[3-9]
Name in latin: Reperta abnormia in speciminibus ex organis digestoriis et cavitate abdominali

NAME	R18_ABNORMAL_FINDI_PERITONEAL_FLUID_SALIVA
CONTROL_EXCLUDE	R18_ABNORMAL_FINDI_EXAMI_OTHER_BODY_FLUIDS_SUBST_TISSU_WO_DIAGNOSIS
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	R85
HD_ICD_9
HD_ICD_8
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	R85
COD_ICD_9
COD_ICD_8
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

Similar endpoints

↥

List of similar endpoints to Abnormal findings in peritoneal fluid saliva based on the number of shared cases.

Similar with more cases:

Similar with less cases:

None

Case counts by codes

↥

FinnGen case counts by registry codes:

Upset plot

Full data table

Summary Statistics

↥

-FinRegistry-

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

-FinnGen-

Key figures

	All	Female	Male
Number of individuals	139	80	59
Unadjusted period prevalence (%)	0.03	0.03	0.03
Median age at first event (years)	56.82	54.69	59.70

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS

↥

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log₁₀(p-value) ≥ 6.

Matched cohort

Matched cases
144: Matched controls
1440

Code

Vocabulary

Description

Odds Ratio

-log₁₀(p)

N matched cases

N matched controls

R85.0

ICD-10 Finland

Abnormal findings in specimens from digestive organs and abdominal cavity, abnormal level of enzymes

+∞

52.3

R85.9

ICD-10 Finland

Abnormal findings in specimens from digestive organs and abdominal cavity, unspecified abnormal finding

+∞

33.7

R85.8

ICD-10 Finland

Abnormal findings in specimens from digestive organs and abdominal cavity, other abnormal findings

+∞

25.8

R85.7

ICD-10 Finland

Abnormal findings in specimens from digestive organs and abdominal cavity, abnormal histological findings

+∞

25.8

R10.4

ICD-10 Finland

Other and unspecified abdominal pain

4.2

16.1

348

UJF32

NOMESCO Finland

Coloscopy

3.9

14.3

232

R87.6

ICD-10 Finland

Abnormal findings in specimens from female genital organs, abnormal cytological findings

35.4

10.5

UJD10

NOMESCO Finland

Esophagoscopy, gastroscopy and duodenoscopy

3.1

9.6

243

R85.6

ICD-10 Finland

Abnormal findings in specimens from digestive organs and abdominal cavity, abnormal cytological findings

+∞

8.4

Z01.8

ICD-10 Finland

Other specified special examinations

3.0

8.0

189

R11

ICD-10 Finland

Nausea and vomiting

4.1

7.5

JN3AD

NOMESCO Finland

Abdominal CT examination

3.3

7.0

101

R10.1

ICD-10 Finland

Pain localized to upper abdomen

2.9

6.6

160

JN3CD

NOMESCO Finland

Abdominal CT examination both without and with contrast

9.9

6.4

ULA02

NOMESCO Finland

Kolposcopy

7.8

6.1

LabWAS

↥

N Cases

N Controls

-log₁₀(p)

cases

controls

cases

controls

unit

-log₁₀(p)

N cases

N controls

(3016771) Amylase [Enzymatic activity/volume] in Serum or Plasma

392

2.83

8.63

3.2

2.6

66.67

63.96

u/l

0.07

375

(3013721) Aspartate aminotransferase [Enzymatic activity/volume] in Serum or Plasma

448

2.62

7.44

3.7

3.1

50.38

28.71

u/l

0.70

429

(3016431) Calcium.ionized [Moles/volume] adjusted to pH 7.4 in Serum or Plasma

592

2.19

4.92

7.6

8.0

1.20

1.22

mmol/l

0.67

527

(3000570) Elastase.pancreatic [Mass/mass] in Stool

3.87

4.91

1.6

1.3

337.75

292.17

ug/g

—

(3019060) Gas panel - Arterial blood

2.84

3.63

4.1

11.5

—

(3036481) Cortisol [Moles/volume] in Serum or Plasma

115

2.42

3.54

1.4

2.0

336.08

396.05

nmol/l

0.80

108

(3032080) INR in Blood by Coagulation assay

533

1.90

3.53

23.3

10.9

1.25

1.22

inr

0.13

436

(3019800) Troponin T.cardiac [Mass/volume] in Serum or Plasma

472

1.89

3.43

4.4

3.9

25.46

38.16

ng/l

0.80

317

(3019050) Tissue transglutaminase IgA Ab [Units/volume] in Serum

293

1.96

3.35

1.6

1.3

1.58

0.92

u/ml

0.51

(3003785) Carcinoembryonic Ag [Mass/volume] in Serum or Plasma

141

2.22

3.23

4.6

4.1

4.95

10.36

ug/l

1.07

112

(3015736) pH of Urine

511

1.82

3.10

4.4

3.7

6.08

6.21

0.46

293

(3019198) Lymphocytes [#/volume] in Blood

648

1.81

3.00

4.9

6.1

2.88

2.10

e9/l

0.34

575

(3007853) Bacteria identified in Skin by Aerobe culture

139

2.16

2.95

1.5

1.7

—

(3038177) Helicobacter pylori Ab [Presence] in Serum

5.60

2.90

1.3

1.1

—

(3037522) Nuclear Ab [Titer] in Serum

163

2.06

2.85

1.3

1.4

328.89

669.00

titre

—

(3023368) Bacteria identified in Blood by Culture

329

1.80

2.69

5.4

4.3

—

(3006315) Basophils [#/volume] in Blood

633

1.73

2.65

5.0

6.0

0.05

0.04

e9/l

1.13

543

(3005322) IgE [Units/volume] in Serum or Plasma

2.44

2.63

1.6

1.2

187.69

419.24

u/ml

0.45

(3009343) pH of Capillary blood

2.44

2.63

2.4

2.3

7.41

7.43

0.49

(3022313) Gas panel - Capillary blood

2.76

2.61

1.9

2.0

—

(3007164) IgA [Mass/volume] in Serum or Plasma

265

1.83

2.58

1.4

1.5

2.58

2.42

g/l

0.18

160

(3025130) Human papilloma virus identified in Specimen

7.35

2.57

1.6

1.3

—

(3051552) Clostridioides difficile toxin genes [Presence] in Stool by NAA with probe detection

2.31

2.47

1.4

1.6

—

(3017143) Hepatitis C virus Ab [Presence] in Serum

157

1.97

2.44

1.4

1.6

—

(3018006) Microscopic observation [Identifier] in Cervix by Cyto stain.thin prep

165

1.95

2.42

1.5

1.4

—

(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip

491

1.68

2.41

5.3

4.0

0.00

estimate

-0.00

121

(46236952) Glomerular filtration rate [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (MDRD)/1.73 sq M

2.18

2.40

2.7

2.8

58.70

64.02

ml/min/173m2

—

(3018418) pH of Serum or Plasma

375

1.70

2.36

4.7

4.2

7.40

0.17

277

(3020779) Urea [Moles/volume] in Serum or Plasma

2.22

2.28

9.0

8.9

9.32

7.96

mmol/l

0.60

(3042936) Bacteria identified in Isolate by Culture

178

1.87

2.21

2.4

2.3

—

(43054903) Holo-transcobalamin II [Moles/volume] in Serum

509

1.64

2.20

2.3

2.1

90.39

95.15

pmol/l

0.33

266

(3001604) Monocytes [#/volume] in Blood

634

1.63

2.19

5.0

6.0

0.66

0.56

e9/l

0.87

544

(3008909) Norovirus RNA [Presence] in Stool by NAA with probe detection

3.13

2.19

1.1

1.3

—

(3051714) Fibrin D-dimer FEU [Mass/volume] in Platelet poor plasma

262

1.73

2.13

1.4

1.8

2.57

1.10

mg/l

0.70

218

(3001079) Blood group antibody screen [Presence] in Serum or Plasma

569

1.62

2.13

3.4

2.9

—

estimate

—

(3013115) Eosinophils [#/volume] in Blood

658

1.62

2.10

5.1

6.4

0.22

0.19

e9/l

0.71

576

(3025941) Bacteria identified in Stool by Culture

2.35

2.08

1.2

—

(3010566) Parathyrin.intact [Moles/volume] in Serum or Plasma

3.20

2.04

2.1

3.2

5.91

9.29

pmol/l

—

(40768441) Liver Pathology biopsy report

4.67

1.95

1.0

1.3

—

(3019977) pH of Arterial blood

139

1.87

1.90

4.7

11.8

7.41

7.42

0.21

(3013650) Neutrophils [#/volume] in Blood by Automated count

698

1.58

1.89

7.3

11.1

4.64

4.07

e9/l

0.88

603

(3044640) Blood type and Crossmatch panel - Blood

387

1.58

1.83

3.1

2.4

—

(3026008) Bacteria identified in Urine by Culture

343

1.60

1.81

4.9

3.2

—

(3003458) Phosphate [Moles/volume] in Serum or Plasma

167

1.76

1.74

8.8

5.7

0.97

1.04

mmol/l

0.74

150

(3027529) Toxoplasma gondii IgM Ab [Units/volume] in Serum

3.94

1.73

1.4

1.2

—

(3032773) Endomysium IgG Ab [Titer] in Serum

3.94

1.73

1.2

1.1

—

(3027945) Reticulocytes/Erythrocytes in Blood

128

1.85

1.72

2.4

2.7

1.74

1.87

0.18

118

(3012516) Albumin [Mass/volume] in Urine

383

1.56

1.72

4.5

3.4

57.65

72.08

mg/l

0.19

241

(3035350) Ketones [Presence] in Urine by Test strip

649

1.52

1.69

5.3

4.0

0.00

11.20

estimate

0.50

145

(3015377) Calcium [Moles/volume] in Serum or Plasma

412

1.54

1.68

4.4

3.3

2.35

2.36

mmol/l

0.29

375

(3028271) Lactate [Moles/volume] in Capillary blood

3.25

1.68

1.5

1.9

1.37

1.44

mmol/l

—

(3009508) Creatinine [Moles/volume] in Urine

403

1.54

1.68

4.4

3.2

7.01

7.83

mmol/l

0.74

347

(3021601) Nitrite [Presence] in Urine by Test strip

640

1.52

1.68

5.4

4.0

0.00

estimate

-0.00

142

(3048816) Calcium.ionized [Moles/volume] adjusted to pH 7.4 in Blood

2.02

1.67

3.3

4.4

1.25

1.23

mmol/l

0.81

(586526) SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with probe detection

2.25

1.66

1.5

1.2

—

(42870588) Differential panel, method unspecified - Blood

396

1.54

1.63

4.9

5.6

—

(3012544) pH of Venous blood

116

1.84

1.59

5.7

2.8

7.37

7.39

0.63

(3009261) Glucose [Presence] in Urine by Test strip

655

1.50

1.58

5.4

4.1

0.00

estimate

-0.00

139

(40768797) Stomach Pathology biopsy report

165

1.70

1.54

1.3

1.2

—

(3022806) Fractional oxyhemoglobin in Capillary blood

3.41

1.53

1.4

2.0

90.54

89.12

—

(3001334) Neutrophil cytoplasmic Ab [Units/volume] in Serum

2.53

1.51

1.3

1.2

—

(3020682) Albumin/Creatinine [Ratio] in Urine

394

1.50

1.48

5.1

4.0

8.93

12.06

mg/mmol

0.25

238

(46237023) Hepatitis B virus core and surface Ab and surface Ag panel - Serum

2.26

1.43

1.1

1.2

—

(3015635) Cytomegalovirus IgM Ab [Units/volume] in Serum or Plasma

2.68

1.38

1.5

1.4

—

(4024509) Urine culture

2.21

1.37

1.7

1.9

—

(3013139) Helicobacter pylori Ag [Presence] in Stool

1.97

1.33

1.8

1.4

—

(3022096) Basophils/Leukocytes in Blood

582

1.43

1.32

5.4

6.0

0.77

0.68

0.79

549

(3019284) Hepatitis B virus surface Ag [Presence] in Serum

206

1.58

1.32

1.5

1.6

—

(3017918) Cytomegalovirus IgG Ab [Titer] in Serum or Plasma

2.56

1.32

1.5

1.4

—

(3017766) Complement C4 [Mass/volume] in Serum or Plasma

2.43

1.31

1.0

1.5

0.26

0.22

g/l

—

(3000620) Complement C3 [Mass/volume] in Serum or Plasma

2.43

1.31

1.0

1.6

1.36

1.09

g/l

—

(3020460) C reactive protein [Mass/volume] in Serum or Plasma

128

1181

1.75

1.30

22.0

15.6

24.83

23.57

mg/l

0.18

111

949

(40758558) Short blood count panel - Blood

367

1.46

1.28

3.1

6.6

—

(3004588) Protein electrophoresis panel - Serum or Plasma

1.88

1.26

2.4

3.1

—

(3005702) Mycobacterium sp identified in Specimen by Organism specific culture

2.46

1.25

1.0

1.4

—

(3007844) Epstein Barr virus capsid IgM Ab [Units/volume] in Serum by Immunoassay

2.46

1.25

1.3

1.2

—

(3003327) Ova and parasites identified in Stool by Light microscopy

2.23

1.23

2.3

1.5

—

(3021337) Troponin I.cardiac [Mass/volume] in Serum or Plasma

236

1.52

1.21

4.5

3.5

185.96

126.69

ng/l

0.13

176

(1616796) Gas panel - Central venous blood

2.36

1.20

4.3

2.5

—

(3030306) Epithelial cells.non-squamous [#/volume] in Urine by Automated count

211

1.53

1.19

3.3

2.9

1.27

1.00

e6/l

0.18

114

(3030467) Casts [#/volume] in Urine by Automated count

337

1.44

1.16

4.0

3.2

0.25

0.20

e6/l

0.15

241

(3041096) Erythrocytes [Presence] in Urine by Automated

383

1.42

1.15

4.6

3.6

0.00

estimate

-0.00

111

(3019150) Specific gravity of Urine by Refractometry

283

1.47

1.15

5.4

4.1

1.02

kg/l

0.24

188

(3022145) Colonoscopy Study observation

153

1.60

1.15

1.5

1.3

—

(3010421) pH of Blood

2.06

1.14

3.1

3.2

7.42

7.41

—

(4035726) Immunohistochemistry procedure

1.73

1.12

1.6

1.3

—

(3021589) Normoblasts [#/volume] in Blood

548

1.38

1.08

14.6

11.6

0.00

e9/l

0.50

432

(3019902) Methicillin resistant Staphylococcus aureus [Presence] in Specimen by Organism specific culture

107

1.67

1.05

3.9

3.3

—

(40761511) CBC panel - Blood by Automated count

130

1219

1.68

1.04

23.6

13.8

—

(3016293) Bicarbonate [Moles/volume] in Serum or Plasma

1.78

1.03

3.6

7.0

23.45

24.82

mmol/l

0.63

(3014162) Mycobacterium tuberculosis DNA [Presence] in Specimen by NAA with probe detection

1.93

1.02

3.6

2.8

—

(46236098) ABO and Rh group [Type] in Blood by Confirmatory method

282

1.42

0.99

3.0

2.4

—

(3003031) Transferrin.carbohydrate deficient.disialo/Transferrin.total in Serum or Plasma

134

1.57

0.98

2.5

1.7

1.57

1.51

0.21

117

(37019628) Gastrointestinal bacterial pathogens panel - Stool by NAA with probe detection

1.94

0.95

1.0

1.7

—

(3013290) Carbon dioxide [Partial pressure] in Blood

2.27

0.94

3.8

2.8

5.00

5.11

kpa

—

(3027315) Oxygen [Partial pressure] in Blood

2.27

0.94

3.8

2.8

8.75

8.41

kpa

—

(3000494) Fungus identified in Specimen by Culture

145

1.52

0.91

1.7

—

(3002523) Influenza virus A Ag [Presence] in Specimen

2.11

0.90

1.2

1.1

—

(3003740) Influenza virus B Ag [Presence] in Specimen

2.11

0.90

1.2

1.1

—

(3002582) Erythrocytes [#/volume] in Urine

389

1.35

0.89

4.3

3.3

10.50

34.18

e6/l

1.52

287

(3024891) Influenza virus A+B Ag [Presence] in Specimen

1.91

0.89

1.3

1.2

—

(4034850) Laboratory test

1.91

0.89

9.6

—

(3027238) Thyroperoxidase Ab [Units/volume] in Serum or Plasma

1.69

0.88

1.2

1.1

455.80

104.15

u/ml

—

(43534045) MCM6 gene c.-13910C>T and -13915T>G [Identifier] in Blood or Tissue by Molecular genetics method Nominal

1.75

0.85

1.0

—

(3004716) Salmonella sp identified in Stool by Organism specific culture

1.78

0.82

1.4

1.3

—

(40760892) CBC W Ordered Manual Differential panel - Blood

301

1.36

0.81

3.8

4.2

—

(3010517) Carboxyhemoglobin/Hemoglobin.total in Venous blood

1.72

0.81

3.1

2.3

1.35

1.16

0.35

(3013527) Hepatitis B virus core IgM Ab [Presence] in Serum

1.85

0.80

1.2

—

(42529406) Shigella sp [Presence] in Stool by Culture

1.80

0.77

1.2

—

(3006418) Campylobacter sp identified in Tissue by Organism specific culture

1.80

0.77

1.2

—

(3014765) Yersinia sp identified in Stool by Organism specific culture

1.80

0.77

1.2

—

(3016251) Hemoglobin.gastrointestinal [Presence] in Stool

1.71

0.76

2.6

2.4

—

(40768804) Tissue Pathology biopsy report

466

1.29

0.73

2.4

2.0

—

(3013512) EKG study

410

1.30

0.72

4.3

3.5

—

(40769539) Bacteria identified based on 16S rRNA gene [Identifier] in Specimen by Sequencing

1.96

0.71

1.4

1.6

—

(40768443) Skin Pathology biopsy report

1.59

0.71

1.1

1.2

—

(3024135) Streptococcus.beta-hemolytic [Presence] in Throat by Organism specific culture

243

1.35

0.71

2.1

1.6

—

(3002179) Metamyelocytes/Leukocytes in Blood

1.54

0.70

2.8

3.7

0.60

0.48

—

(3024950) Chlamydia trachomatis DNA [Presence] in Urine by NAA with probe detection

137

1.45

0.69

2.1

2.0

—

(3029879) Epithelial cells.squamous [#/volume] in Urine by Automated count

199

1.37

0.69

3.5

3.0

5.02

2.65

e6/l

0.52

102

(3021879) Hepatitis B virus core Ab [Presence] in Serum

103

1.51

0.68

1.2

1.5

—

(3018095) Leukocytes [#/volume] in Urine

443

1.27

0.66

5.2

3.9

20.39

63.15

e6/l

0.68

298

(43054914) Glucose tolerance 2 hours panel - Serum or Plasma

139

1.42

0.64

1.4

1.7

—

(36305247) Microscopic observation [Identifier] in Isolate by Gram stain

1.75

0.64

1.2

1.4

—

(3008898) HLA-B27 [Presence]

1.60

0.61

1.0

1.1

—

(1002102) Choriogonadotropin.intact+Beta subunit [Mass/volume] in Serum or Plasma

0.00

0.61

0.0

1.6

—

58.88

—

(3011397) Hemoglobin [Presence] in Urine by Test strip

277

1.30

0.60

5.2

3.6

—

0.00

—

(3001784) Prostate Specific Ag Free/Prostate specific Ag.total in Serum or Plasma

296

1.29

0.60

6.0

4.2

23.57

23.52

0.01

134

(21492888) Glucose tolerance 2 hours gestational panel - Serum or Plasma

0.00

0.59

0.0

1.7

—

(3033319) Streptococcus pyogenes Ag [Presence] in Throat

147

0.66

0.57

2.3

1.6

—

(3027545) Mycoplasma pneumoniae Ab [Presence] in Serum by Immunoassay

1.65

0.56

2.2

1.3

—

(3024889) Methemoglobin/Hemoglobin.total in Venous blood

1.55

0.54

3.3

2.2

0.68

0.62

—

(3041942) Cyclic citrullinated peptide Ab [Units/volume] in Serum

235

1.29

0.54

1.3

22.68

7.42

u/ml

0.31

100

(3029187) Natriuretic peptide.B prohormone N-Terminal [Mass/volume] in Serum or Plasma

358

1.24

0.52

3.8

3.7

1110.71

1667.27

ng/l

0.53

308

(3003694) ABO and Rh group [Type] in Blood

356

0.80

0.46

1.2

1.5

—

(40761536) Microorganisms panel - Urine sediment

1.39

0.43

8.8

3.6

—

(3003510) Neisseria gonorrhoeae DNA [Presence] in Urine by NAA with probe detection

123

1.34

0.42

2.0

1.9

—

(1002224) Polysomnography panel

1.40

0.42

1.1

—

(3029379) Protein.monoclonal band 4 [Mass/volume] in Serum or Plasma by Electrophoresis

1.53

0.42

4.0

3.2

0.00

g/l

—

(3000081) cloZAPine [Moles/volume] in Serum or Plasma

0.00

0.41

0.0

14.7

—

1652.53

—

(36660697) Celiac disease serology panel - Serum

106

1.36

0.41

1.4

1.2

—

(3048773) Triglyceride [Moles/volume] in Serum or Plasma --fasting

109

1139

0.82

0.40

4.3

4.2

1.30

1.28

mmol/l

0.11

102

1062

(36033641) SARS-CoV-2 (COVID-19) Ag [Presence] in Upper respiratory specimen by Rapid immunoassay

0.00

0.40

0.0

1.3

—

(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection

762

1.18

0.39

3.8

3.3

—

(46235759) Influenza virus B RNA [Presence] in Nasopharynx by NAA with probe detection

1.48

0.36

1.5

2.3

—

(3023602) Cholesterol in HDL [Moles/volume] in Serum or Plasma

115

1192

0.83

0.35

5.0

4.9

1.48

mmol/l

0.03

108

1120

(3029937) Albumin [Presence] in Urine by Test strip

353

1.18

0.35

6.7

3.7

0.00

estimate

-0.00

124

(3044938) Influenza virus A RNA [Presence] in Specimen by NAA with probe detection

201

1.23

0.35

2.2

2.0

—

(3048929) Epstein Barr virus Ab [Presence] in Serum

1.38

0.35

1.5

1.4

—

(3016921) Smith extractable nuclear Ab [Units/volume] in Serum

1.38

0.35

1.0

1.2

—

3.04

—

(3027450) Sjogrens syndrome-B extractable nuclear Ab [Units/volume] in Serum

1.29

0.32

1.2

—

1.58

—

(3026493) Urate [Moles/volume] in Serum or Plasma

318

1.18

0.31

2.6

2.9

342.71

339.55

umol/l

0.05

286

(3002256) Pathology report gross observation

157

1.24

0.31

1.4

1.2

—

(3018251) Fasting glucose [Moles/volume] in Serum or Plasma

119

1150

1.20

0.31

5.1

4.9

6.17

5.97

mmol/l

0.71

112

1076

(3020891) Body temperature

1.29

0.30

5.1

4.2

36.91

37.00

°c

—

(3038288) Influenza virus B RNA [Presence] in Specimen by NAA with probe detection

149

1.24

0.29

2.0

1.9

—

(3000991) Gas panel - Venous blood

1.29

0.27

6.5

8.4

—

(3046870) Tissue transglutaminase IgG Ab [Units/volume] in Serum

1.23

0.26

1.1

1.2

—

(1001926) Buprenorphine [Presence] in Urine by Screen method

1.36

0.24

1.2

1.7

—

(3036086) Jo-1 extractable nuclear Ab [Units/volume] in Serum by Immunoassay

1.29

0.23

1.0

1.2

—

(1761482) Bacteria [#/volume] in Urine by Culture

1.29

0.23

5.2

5.8

—

(3016879) Cocaine [Presence] in Urine

1.26

0.22

1.2

1.5

—

(3027008) Opiates [Presence] in Urine

1.23

0.22

1.2

1.5

—

(3000764) Benzodiazepines [Presence] in Urine

1.23

0.22

1.2

1.5

—

(4094501) Cardiovascular stress test using bicycle ergometer

1.23

0.22

1.2

1.1

—

(3027944) Amphetamines [Presence] in Urine

1.23

0.22

1.2

1.5

—

(3028300) Cannabinoids [Presence] in Urine

1.23

0.22

1.2

1.5

—

(3049539) Genetic diseases [Identifier] in Blood or Tissue by FISH Nominal

0.00

0.21

0.0

1.1

—

(1617658) Protocol used for examination of sentinel lymph nodes

0.00

0.21

0.0

1.0

—

(3010380) Borrelia burgdorferi IgG Ab [Units/volume] in Cerebral spinal fluid

0.00

0.21

0.0

1.1

—

(44816752) ERBB2 gene copy number/nucleus in Tissue by FISH

0.00

0.21

0.0

1.1

—

(3018301) Testosterone Free [Moles/volume] in Serum or Plasma

0.00

0.21

0.0

1.2

—

184.07

—

(4146454) Self-monitoring of blood glucose

0.00

0.21

0.0

3.2

—

(3014037) CD3+CD4+ (T4 helper) cells/cells in Blood

0.00

0.21

0.0

3.7

—

47.33

—

(43055361) Metamyelocytes/Leukocytes [Pure number fraction] in Blood by Manual count

0.00

0.21

0.0

3.8

—

1.08

—

(4268621) Lupus anticoagulant assay

0.00

0.21

0.0

2.2

—

(3011166) Borrelia burgdorferi Ab [Presence] in Cerebral spinal fluid

0.00

0.21

0.0

1.1

—

(3013201) Beta-2-Microglobulin [Mass/volume] in Serum or Plasma

0.00

0.21

0.0

1.9

—

3.42

—

(3014973) Borrelia burgdorferi IgM Ab [Units/volume] in Cerebral spinal fluid

0.00

0.21

0.0

1.1

—

(3044242) Glucose [Moles/volume] in Arterial blood

0.00

0.21

0.0

7.2

—

6.83

—

(46235355) HIV 1 and 2 tests - Meaningful Use set

241

1.15

0.21

1.7

1.9

—

(3021125) Hepatitis C virus RNA [Presence] in Serum or Plasma by NAA with probe detection

0.00

0.21

0.0

1.6

—

(3021614) Rheumatoid factor [Units/volume] in Serum or Plasma

251

1.14

0.20

1.4

1.3

131.21

30.88

iu/ml

—

(40768795) Lymph node Pathology biopsy report

0.00

0.20

0.0

1.1

—

(3042206) Streptococcus agalactiae Ag [Presence] in Vaginal fluid

0.00

0.20

0.0

1.4

—

(3000242) Tau protein [Mass/volume] in Cerebral spinal fluid

0.00

0.20

0.0

1.0

—

274.44

—

(3042810) Amyloid beta 42 peptide [Mass/volume] in Cerebral spinal fluid

0.00

0.20

0.0

1.0

—

648.44

—

(3008832) Norclozapine [Moles/volume] in Serum or Plasma

0.00

0.20

0.0

12.1

—

923.57

—

(43055225) Phosphorylated tau 181 [Mass/volume] in Cerebral spinal fluid by Immunoassay

0.00

0.20

0.0

1.0

—

35.00

—

(21494755) Public health laboratory ask at order entry panel

122

0.81

0.20

1.3

—

(40764999) Glomerular filtration rate [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (CKD-EPI)/1.73 sq M

117

1142

1.13

0.18

20.3

14.6

79.72

82.10

ml/min/173m2

0.67

108

1053

(3025839) Triglyceride [Moles/volume] in Serum or Plasma

518

1.10

0.18

2.2

1.9

1.38

mmol/l

0.01

447

(3045783) Sodium and Potassium panel [Moles/volume] - Serum or Plasma

120

0.82

0.17

14.0

7.2

—

(1761868) Lipid panel - Serum or Plasma

505

0.93

0.13

3.7

3.1

—

(3043924) Respiratory syncytial virus RNA [Identifier] in Specimen by NAA with probe detection

153

1.13

0.11

2.2

1.8

—

(3001308) Cholesterol in LDL [Moles/volume] in Serum or Plasma

122

1203

1.09

0.09

5.9

5.7

2.64

2.75

mmol/l

0.66

117

1132

(3001019) Free T4 and TSH panel - Serum or Plasma

1.09

0.09

1.0

2.0

—

(3006093) Chlamydia trachomatis DNA [Presence] in Specimen by NAA with probe detection

0.77

0.08

4.2

2.0

—

(4010399) Spirometry for bronchospasm with prolonged evaluation after bronchodilator

1.12

0.06

1.3

1.4

—

(3005013) Prostate Specific Ag Free [Mass/volume] in Serum or Plasma

219

1.06

0.04

2.7

3.0

0.78

0.76

ug/l

0.06

142

(3000492) Spirometry study

124

1.05

0.00

1.8

1.6

—

(3019832) Treponema pallidum Ab [Presence] in Serum

124

0.96

0.00

1.8

1.6

—

(3017732) Neutrophils [#/volume] in Blood

157

1.02

0.00

2.9

3.9

4.22

5.65

e9/l

0.45

143

(3006262) Parainfluenza virus 3 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

2.5

—

(3029023) Hepatitis E virus IgG Ab [Presence] in Serum by Immunoassay

0.00

0.0

1.0

—

(37021247) Adenovirus 40+41 DNA [Presence] in Stool by NAA with probe detection

0.00

0.0

1.8

—

(36031861) Influenza virus A and B and SARS-CoV-2 (COVID-19) and Respiratory syncytial virus RNA panel - Respiratory system specimen by NAA with probe detection

0.95

0.00

2.7

1.5

—

(3053028) Streptococcus sp identified in Specimen by Organism specific culture

0.00

0.0

1.0

—

(3012158) Parainfluenza virus 2 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

2.5

—

(3002222) Hepatitis E virus IgM Ab [Presence] in Serum

0.00

0.0

1.0

—

(3036185) Alkaline phosphatase.liver 2 [Enzymatic activity/volume] in Serum or Plasma

0.00

0.0

1.3

—

43.52

—

(3035062) Alkaline phosphatase.liver 1 [Enzymatic activity/volume] in Serum or Plasma

0.00

0.0

1.3

—

88.98

—

(3025634) Parainfluenza virus 1 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

2.5

—

(3038297) Parainfluenza virus 4 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

2.5

—

(3047189) Immunofixation for 24 hour Urine

0.00

0.0

3.8

—

(37020445) Astrovirus RNA [Presence] in Stool by NAA with probe detection

0.00

0.0

1.8

—

(3020650) Glucose [Presence] in Urine

0.00

0.0

1.0

—

0.00

—

(3034603) RHD gene allele [Genotype] in Blood or Tissue by Molecular genetics method Nominal

0.00

0.0

1.5

—

(40758895) Direct antiglobulin test.complement C3d specific reagent [Presence] on Red Blood Cells

0.00

-0.00

0.0

3.0

—

(3005156) Respiratory syncytial virus A RNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

2.4

—

(3022803) Oxygen [Partial pressure] adjusted to patient's actual temperature in Arterial blood

0.00

-0.00

0.0

4.7

—

9.93

—

(3019420) Tryptase [Mass/volume] in Serum or Plasma

0.00

-0.00

0.0

1.3

—

6.77

—

(3006653) Thiamine [Moles/volume] in Blood

0.00

-0.00

0.0

1.1

—

143.67

—

(42868414) European tick borne encephalitis virus IgM Ab [Presence] in Serum by Immunoassay

0.00

-0.00

0.0

1.4

—

(3045156) Carbon dioxide [Partial pressure] adjusted to patient's actual temperature in Arterial blood

0.00

-0.00

0.0

4.7

—

4.67

—

(40758897) Direct antiglobulin test.IgG specific reagent [Presence] on Red Blood Cells

0.00

-0.00

0.0

3.0

—

(40770918) von Willebrand factor (vWf).activity actual/normal in Platelet poor plasma by Immunoassay

0.00

-0.00

0.0

3.2

—

130.40

—

(3000108) Respiratory syncytial virus B RNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

2.4

—

(3008536) Aspergillus sp Ab [Presence] in Serum

0.00

-0.00

0.0

1.2

—

(3014791) Apolipoprotein B [Mass/volume] in Serum or Plasma

0.96

-0.00

1.0

1.2

0.85

0.92

g/l

—

(3016894) Varicella zoster virus DNA [Presence] in Cerebral spinal fluid by NAA with probe detection

0.00

-0.00

0.0

1.1

—

(3037875) Bordetella parapertussis DNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

1.6

—

(3002079) Sodium [Moles/time] in 24 hour Urine

0.00

-0.00

0.0

1.1

—

166.74

—

(42868499) Enterovirus IgG Ab [Presence] in Cerebral spinal fluid by Immunoassay

0.00

-0.00

0.0

1.0

—

(3005757) Coagulation factor V activity actual/normal in Platelet poor plasma by Coagulation assay

0.00

-0.00

0.0

1.6

—

115.60

—

(40764127) Haemophilus influenzae DNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

1.4

—

(3015024) Glucose [Moles/volume] in Serum or Plasma --1 hour post dose glucose

0.00

-0.00

0.0

1.6

—

6.94

—

(40766800) Mycobacterium tuberculosis stimulated gamma interferon release by CD4+ T-cells [Units/volume] corrected for background in Blood

0.00

-0.00

0.0

1.0

—

(3028433) Virus identified in Specimen by Culture

0.00

-0.00

0.0

1.4

—

(3034988) Calcium [Moles/volume] in Capillary blood

0.00

-0.00

0.0

2.0

—

1.20

—

(3040363) Hepatitis A virus IgG Ab [Presence] in Serum by Immunoassay

0.00

-0.00

0.0

1.0

—

(3032699) Streptococcus pneumoniae DNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

1.4

—

(21493195) Respiratory pathogens DNA and RNA tested for in Respiratory system specimen by NAA with probe detection

0.00

-0.00

0.0

2.4

—

(3002619) Bacteria identified in Specimen by Culture

0.00

-0.00

0.0

1.2

—

(3024666) Lithium [Moles/volume] in Serum or Plasma

0.00

-0.00

0.0

11.9

—

0.68

—

(43055089) Myosin Ab [Presence] in Serum or Plasma by Immunoblot

0.00

-0.00

0.0

1.2

—

(3039602) Calcium.ionized [Moles/volume] adjusted to pH 7.4 in Capillary blood

0.00

-0.00

0.0

2.0

—

1.30

—

(1001509) Gas and Carbon monoxide and Electrolytes panel - Arterial blood

0.00

-0.00

0.0

1.9

—

(3046896) Herpes virus 6 DNA [Presence] in Cerebral spinal fluid by NAA with probe detection

0.00

-0.00

0.0

1.1

—

(3024263) Appearance of Synovial fluid

0.00

-0.00

0.0

1.2

—

Mortality – FinRegistry

↥

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

Relationships between endpoints

↥

Index endpoint: R18_ABNORMAL_FINDI_PERITONEAL_FLUID_SALIVA – Abnormal findings in peritoneal fluid saliva

GWS hits: -

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

≡ Risteys

R14

FinnGen R13 + FinRegistry

FinnGen R12 + FinRegistry

FinnGen R11 + FinRegistry

FinnGen R10 + FinRegistry

FinnGen R10

FinnGen R9

FinnGen R8

FinnGen R7

FinnGen R6

FinnGen R5

FinnGen R4

FinnGen R3

Abnormal findings in peritoneal fluid saliva

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

1. Apply sex-specific rule

2. Check conditions

3. Check pre-conditions, main-only, mode, registry filters

4. Check minimum number of events

5. Include endpoints

6. Filter based on genotype QC (FinnGen only)

All original rules

Similar endpoints

Case counts by codes

Upset plot

Case counts by code for Abnormal findings in peritoneal fluid saliva (R18_ABNORMAL_FINDI_PERITONEAL_FLUID_SALIVA)

Summary Statistics

-FinRegistry-

-FinnGen-

Key figures

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

CodeWAS

Matched cohort

LabWAS

Mortality – FinRegistry

Relationships between endpoints