Multiple system atrophy (rare forms of Parkinsonism)

G6_MULTIPLE_SYSTEM_ATROPHY

Endpoint definition

Report an error or suggest an improvement for this endpoint codes

Endpoint definition steps

FinnGen

Phenotype data

557745

1. Apply sex-specific rule

None

557745

2. Check conditions

None

557745

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 G90.3
  • Cause of death: ICD-10 G90.3

2 out of 7 registries used, show all original rules.

117

4. Check minimum number of events

None

117

5. Include endpoints

None

117

6. Filter based on genotype QC (FinnGen only)

104

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

This endpoint is excluded (different definition than used in FinnGen).

-FinnGen-

Key figures

All Female Male
Number of individuals 104 44 60
Unadjusted period prevalence (%) 0.02 0.02 0.03
Median age at first event (years) 70.80 70.35 71.13

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

No data

CodeWAS

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

Matched cohort

Matched cases
105
Matched controls
1050
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
G90.3
ICD-10 Finland
Multi-system degeneration
+∞
151.4
105
*
N04BA02
ATC
levodopa and decarboxylase inhibitor; oral
123.8
129.1
73
19
110
Kela drug reimbursment
Parkinson's disease and comparable movement disrorders
125.9
112.4
60
11
G20
ICD-10 Finland
Parkinson disease
115.3
110.6
60
12
N87
ICPC
Parkinsonism
152.6
38.9
39
*
N04BC05
ATC
pramipexole; oral
11.8
30.7
39
50
N04BD01
ATC
selegiline; oral
102.3
22.8
24
*
N04BA03
ATC
levodopa, decarboxylase inhibitor and COMT inhibitor; oral
214.8
18.1
18
*
H02AA02
ATC
fludrocortisone; oral
51.7
18.1
21
5
N04BC04
ATC
ropinirole; oral
200.6
17.0
17
*
N04BD02
ATC
rasagiline; oral
173.1
14.9
15
*
G23.2
ICD-10 Finland
Multiple system atrophy, parkinsonian type [MSA-P]
134.1
11.7
12
*
193
Kela drug reimbursment
Rasagiline
134.1
11.7
12
*
XF606
NOMESCO Finland
Ortostatic test
+∞
11.7
11
*
R4130
NOMESCO Finland
Speech therapy
16.6
10.9
17
12
G23.3
ICD-10 Finland
Multiple system atrophy, cerebellar type [MSA-C]
+∞
10.6
10
*
I95.1
ICD-10 Finland
Orthostatic hypotension
8.7
10.2
22
31
AA1BG
NOMESCO Finland
Standard MRI examination of brain with high intensity magnet
5.5
9.6
21
46
G25.9
ICD-10 Finland
Extrapyramidal and movement disorder, unspecified
40.5
9.2
11
*
N28
ICPC
Limited function/disability (N)
18.3
8.8
13
8
G21.9
ICD-10 Finland
Secondary parkinsonism, unspecified
97.6
8.5
9
*
G23.9
ICD-10 Finland
Degenerative disease of basal ganglia, unspecified
97.6
8.5
9
*
J69.0
ICD-10 Finland
Pneumonitis due to food and vomit
16.2
8.5
13
9
AA1CG
NOMESCO Finland
Extensive MRI examination of brain with high intensity magnet
5.1
7.5
17
38
N03AE01
ATC
clonazepam; systemic
9.0
7.4
15
19
R26.8
ICD-10 Finland
Other and unspecified abnormalities of gait and mobility
10.4
7.0
13
14
SPAT1229
SPAT
Assessment of need for aid
4.8
6.8
17
41
R29.8
ICD-10 Finland
Other and unspecified symptoms and signs involving the nervous and musculoskeletal systems
4.5
6.8
18
46
L89
ICD-10 Finland
Decubitus ulcer and pressure area
13.5
6.8
11
9
G23.8
ICD-10 Finland
Other specified degenerative diseases of basal ganglia
+∞
6.3
6
*

LabWAS

OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
59
811
0.38
5.48
4.7
5.9
5.93
6.13
mmol/l
0.76
54
731
11
343
0.24
5.36
2.3
2.0
1.16
1.32
mmol/l
0.47
11
276
8
268
0.24
4.96
1.8
4.1
—
—
—
0
0
57
778
0.42
4.59
3.6
4.8
1.17
1.28
mmol/l
0.71
50
699
48
670
0.48
3.40
32.3
25.2
13.87
13.94
%
0.13
48
664
69
841
0.48
3.03
18.3
17.3
—
—
—
0
0
16
66
2.68
2.87
2.2
4.3
25.79
23.95
mmol/l
1.02
16
66
55
708
0.53
2.56
4.8
9.1
79.37
83.06
u/l
0.23
49
667
14
283
0.42
2.47
6.9
3.7
0.00
0.00
estimate
—
5
92
21
108
2.18
2.36
2.6
1.7
—
—
—
0
0
63
772
0.54
2.34
5.1
5.7
1.86
2.04
mu/l
0.90
56
684
38
534
0.55
2.24
3.4
7.1
10.82
12.16
umol/l
0.61
33
502
20
110
2.01
1.89
2.0
4.0
7.34
7.39
ph
—
7
70
26
158
1.86
1.85
2.9
3.3
2.64
1.72
e6/l
0.18
16
89
24
368
0.55
1.79
1.8
2.3
—
—
—
0
0
29
185
1.78
1.77
1.6
1.7
1040.47
1188.01
nmol/l
0.41
23
147
21
121
1.92
1.75
10.0
7.7
7.39
7.42
ph
—
10
74
42
307
1.61
1.53
3.9
4.4
—
—
—
0
0
10
194
0.46
1.51
2.1
6.1
—
—
—
0
0
27
384
0.60
1.46
4.0
6.3
3.39
2.59
ug/l
0.23
22
344
11
53
2.20
1.44
8.9
3.8
36.97
36.91
°c
0.41
11
53
39
507
0.63
1.42
14.6
14.8
1.12
1.30
inr
1.61
27
425
42
313
1.57
1.39
4.3
3.2
—
—
—
0
0
25
354
0.61
1.29
3.4
4.2
14.58
11.08
mg/mmol
0.14
16
226
15
87
1.84
1.23
2.7
3.0
—
—
—
0
0
39
294
1.52
1.20
4.0
3.3
0.88
0.37
e6/l
0.52
31
227
11
58
2.00
1.17
1.8
2.6
0.55
0.62
%
0.44
11
58
25
347
0.63
1.16
3.4
3.4
56.48
62.21
mg/l
0.06
19
233
36
271
1.50
1.10
2.6
2.2
2.86
2.86
mg/l
0.00
31
239
5
108
0.44
1.08
1.4
1.3
—
—
—
0
0
75
831
0.66
1.06
21.7
19.3
33.48
25.68
mg/l
0.97
66
711
11
61
1.90
1.03
1.8
2.6
1.09
1.12
%
0.05
11
61
22
151
1.58
1.01
9.8
7.2
103.95
104.09
mmol/l
0.04
22
151
6
27
2.29
0.95
12.0
15.1
—
—
—
0
0
55
634
0.72
0.86
4.1
4.5
14.98
15.07
pmol/l
0.08
47
560
30
382
0.70
0.86
6.2
4.4
0.40
0.00
estimate
—
5
95
12
73
1.73
0.86
3.3
4.0
—
—
—
0
0
41
494
0.72
0.84
5.7
4.3
0.17
0.00
estimate
—
6
115
5
100
0.48
0.82
1.6
1.6
—
—
—
0
0
6
33
1.87
0.80
1.0
1.1
—
—
—
0
0
0
25
0.00
0.80
0.0
6.2
—
31.42
—
0
19
19
134
1.51
0.78
4.5
5.7
0.96
1.06
mmol/l
1.26
19
126
45
374
1.36
0.76
4.6
4.2
114.58
58.87
e6/l
0.40
34
284
33
406
0.73
0.75
9.4
14.0
0.07
0.00
e9/l
0.48
28
334
42
346
1.36
0.75
3.9
3.5
13.76
228.99
e6/l
0.63
34
273
7
116
0.58
0.73
1.6
1.8
—
—
—
0
0
36
434
0.74
0.71
5.0
4.7
32.85
43.90
ng/l
0.42
27
336
43
505
0.75
0.71
5.5
4.3
0.00
0.00
estimate
—
5
104
46
535
0.75
0.71
5.3
11.0
5.79
4.31
e9/l
0.70
40
472
15
103
1.53
0.69
12.6
8.4
114.20
119.79
g/l
0.45
15
103
36
430
0.75
0.66
2.5
2.8
—
—
estimate
—
0
0
11
71
1.61
0.65
8.5
3.7
—
—
—
0
0
8
52
1.58
0.61
7.9
8.3
14.09
14.85
%
—
8
52
0
20
0.00
0.61
0.0
1.4
—
—
—
0
0
0
20
0.00
0.61
0.0
1.4
—
—
—
0
0
0
20
0.00
0.61
0.0
1.4
—
—
—
0
0
0
20
0.00
0.61
0.0
1.4
—
—
—
0
0
0
20
0.00
0.61
0.0
2.6
—
1.00
—
0
13
0
20
0.00
0.61
0.0
1.2
—
150.07
—
0
14
0
21
0.00
0.60
0.0
1.3
—
—
—
0
0
12
81
1.54
0.60
9.7
7.9
0.89
1.24
mmol/l
2.59
12
81
19
247
0.72
0.59
3.5
3.3
340.71
352.29
umol/l
0.21
14
206
0
23
0.00
0.59
0.0
1.2
—
—
—
0
0
13
91
1.49
0.56
9.8
9.2
—
—
—
0
0
9
64
1.44
0.53
14.4
8.0
27.82
24.63
mmol/l
—
9
64
25
200
1.33
0.53
1.5
1.8
1.36
1.41
mg/l
0.05
20
166
44
496
0.81
0.46
5.3
4.3
0.00
14.00
estimate
—
6
116
14
183
0.73
0.45
1.5
1.6
2.70
3.04
g/l
—
6
107
35
300
1.25
0.44
1.9
2.5
—
—
—
0
0
19
235
0.77
0.43
1.3
1.4
—
—
—
0
0
8
59
1.38
0.42
1.4
2.0
1.68
1.65
g/l
—
8
53
0
15
0.00
0.41
0.0
5.2
—
—
—
0
0
0
15
0.00
0.41
0.0
1.1
—
—
—
0
0
0
15
0.00
0.41
0.0
1.5
—
1.60
—
0
15
0
15
0.00
0.41
0.0
1.1
—
—
—
0
0
0
15
0.00
0.41
0.0
1.1
—
—
—
0
0
0
15
0.00
0.41
0.0
1.4
—
0.55
—
0
6
0
15
0.00
0.41
0.0
1.1
—
—
—
0
0
0
16
0.00
0.41
0.0
1.8
—
10.19
—
0
16
0
17
0.00
0.41
0.0
1.4
—
5.48
—
0
12
0
17
0.00
0.41
0.0
4.5
—
—
—
0
0
0
17
0.00
0.41
0.0
3.0
—
105.94
—
0
17
0
17
0.00
0.41
0.0
3.0
—
3.96
—
0
17
0
17
0.00
0.41
0.0
3.0
—
1.20
—
0
17
0
17
0.00
0.41
0.0
1.5
—
0.90
—
0
17
0
19
0.00
0.39
0.0
2.6
—
31.89
—
0
19
0
19
0.00
0.39
0.0
1.1
—
2.69
—
0
13
0
19
0.00
0.39
0.0
1.4
—
—
—
0
0
6
45
1.35
0.34
5.7
5.6
28.07
29.23
mg/l
—
6
38
6
45
1.35
0.34
5.7
5.6
44.38
182.86
mg/l
—
6
38
28
318
0.84
0.29
3.9
4.8
7.40
7.40
ph
0.01
20
228
5
73
0.67
0.27
1.4
2.1
13.80
13.48
nmol/l
—
5
67
9
74
1.24
0.26
1.3
1.4
—
—
—
0
0
5
38
1.33
0.23
1.6
3.4
—
—
—
0
0
24
211
1.18
0.23
5.0
4.8
1.02
1.02
kg/l
0.59
13
147
0
11
0.00
0.21
0.0
1.2
—
247.17
—
0
6
0
11
0.00
0.21
0.0
1.1
—
—
—
0
0
0
11
0.00
0.21
0.0
1.1
—
—
—
0
0
0
11
0.00
0.21
0.0
1.2
—
—
—
0
0
0
11
0.00
0.21
0.0
1.6
—
51.69
—
0
11
0
10
0.00
0.21
0.0
1.4
—
—
—
0
0
0
10
0.00
0.21
0.0
1.6
—
—
—
0
0
0
10
0.00
0.21
0.0
1.2
—
—
—
0
0
0
12
0.00
0.21
0.0
3.2
—
76.67
—
0
12
0
12
0.00
0.21
0.0
1.5
—
—
—
0
0
0
12
0.00
0.21
0.0
1.2
—
—
—
0
0
0
12
0.00
0.21
0.0
1.2
—
—
—
0
0
48
448
1.13
0.21
10.4
6.5
1.20
1.21
mmol/l
0.79
42
412
6
47
1.29
0.21
3.3
1.9
—
—
—
0
0
0
13
0.00
0.21
0.0
1.3
—
—
—
0
0
0
13
0.00
0.21
0.0
2.1
—
3.89
—
0
13
0
14
0.00
0.20
0.0
1.1
—
—
—
0
0
0
14
0.00
0.20
0.0
1.1
—
—
—
0
0
36
389
0.89
0.19
4.8
4.1
6.27
6.18
ph
0.15
15
223
12
142
0.83
0.19
1.1
1.3
—
—
—
0
0
5
65
0.76
0.17
1.2
1.3
218.20
476.10
u/ml
—
5
60
10
119
0.82
0.16
1.2
1.3
—
—
—
0
0
20
222
0.88
0.15
2.3
3.2
0.53
0.89
ug/l
0.93
15
158
27
293
0.89
0.15
6.4
4.3
0.00
0.00
estimate
—
5
104
8
97
0.81
0.14
1.5
3.6
4.88
8.49
umol/l
—
8
83
14
159
0.86
0.14
1.6
1.8
—
—
—
0
0
30
322
0.90
0.13
3.7
5.9
—
—
—
0
0
45
428
1.09
0.12
3.0
2.3
86.81
92.60
pmol/l
0.48
25
229
20
182
1.12
0.12
3.2
2.9
0.86
0.82
mmol/l
0.97
20
169
27
288
0.92
0.10
6.9
6.8
—
—
—
0
0
8
76
1.06
0.07
2.5
3.1
0.22
0.20
g/l
—
8
68
48
496
0.94
0.07
7.2
7.4
1.21
1.21
mmol/l
0.19
42
428
39
400
0.96
0.03
4.4
3.0
129.74
129.95
ug/l
0.00
34
367
11
116
0.94
0.01
1.5
1.5
—
—
—
0
0
63
633
0.99
0.00
7.3
5.0
—
3555.65
—
0
17
12
119
1.01
0.00
1.6
2.7
68.40
71.96
e9/l
—
7
90
0
8
0.00
0.00
0.0
2.0
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.3
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.6
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
43.20
—
0
5
0
7
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.1
—
—
—
0
0
0
5
0.00
-0.00
0.0
7.6
—
46.20
—
0
5
0
6
0.00
-0.00
0.0
2.0
—
0.61
—
0
6
0
9
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.4
—
36.86
—
0
5
0
6
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.3
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.4
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.4
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.9
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.6
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.0
—
—
—
0
0
5
49
1.02
-0.00
1.0
1.2
—
—
—
0
0

Mortality – FinRegistry

This endpoint is excluded (different definition than used in FinnGen).

Relationships between endpoints

Index endpoint: G6_MULTIPLE_SYSTEM_ATROPHY – Multiple system atrophy (rare forms of Parkinsonism)

GWS hits: -

This endpoint is excluded (different definition than used in FinnGen).