viral meningitis: Viral infections of the leptomeninges and subarachnoid space. TOGAVIRIDAE INFECTIONS; FLAVIVIRIDAE INFECTIONS; RUBELLA; BUNYAVIRIDAE INFECTIONS; ORBIVIRUS infections; PICORNAVIRIDAE INFECTIONS; ORTHOMYXOVIRIDAE INFECTIONS; RHABDOVIRIDAE INFECTIONS; ARENAVIRIDAE INFECTIONS; HERPESVIRIDAE INFECTIONS; ADENOVIRIDAE INFECTIONS; JC VIRUS infections; and RETROVIRIDAE INFECTIONS may cause this form of meningitis. Clinical manifestations include fever, headache, neck pain, vomiting, PHOTOPHOBIA, and signs of meningeal irritation. (From Joynt, Clinical Neurology, 1996, Ch26, pp1-3)
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
519870 |
1. Apply sex-specific ruleNone |
519870 |
2. Check conditionsNone |
519870 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
2 out of 7 registries used, show all original rules. |
177 |
4. Check minimum number of eventsNone |
177 |
5. Include endpointsNone |
177 |
6. Filter based on genotype QC (FinnGen only) |
172 |
Control definitions (FinnGen only)
- Control exclude
- G6_NEUINFL
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF12
Similar endpoints
↥List of similar endpoints to
Meningitis, viral
based on the number of shared cases.
Similar with more cases:
- Meningitis
- Inflammatory diseases of the central nervous system
- Certain infectious and parasitic diseases
- Neurological diseases
- Neurological diseases, wide definition
Similar with less cases:
None
Case counts by codes
↥Summary Statistics
↥-FinRegistry-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | |||
| Whole population | 1037 | 609 | 424 |
| Only index persons | 980 | 583 | 397 |
| Unadjusted period prevalence (%) | |||
| Whole population | 0.02 | 0.02 | 0.01 |
| Only index persons | 0.02 | 0.02 | 0.02 |
| Median age at first event (years) | |||
| Whole population | 36.25 | 39.74 | 31.18 |
| Only index persons | 36.97 | 39.99 | 32.53 |
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 172 | 124 | 48 |
| Unadjusted period prevalence (%) | 0.04 | 0.04 | 0.02 |
| Median age at first event (years) | 46.24 | 43.54 | 53.21 |
-FinRegistry-
Age distribution of first events
-FinnGen-
Age distribution of first events
-FinRegistry-
Year distribution of first events
-FinnGen-
Year distribution of first events
-FinRegistry-
Cumulative Incidence Function
-FinnGen-
Cumulative Incidence Function
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 177
- Matched controls
- 1770
TimeCodeWAS
↥TODO / Current known limitations:
- Only showing the top 500 codes, because showing all (sometimes 20k) makes the page too slow.
- Legend / how to read the glyphs.
- Proper column names.
- Show details (e.g. Fisher or Chi-square test, N cases and N controls) when clicking on a row.
- Explanation on the underlying data / how the TimeCodeWAS is done (e.g. matched cases / controls, eligibility).
- Download CSV not working.
- No filters and sorters.
- Limited amount of endpoints with TimeCodeWAS data.
- Cross-links to Risteys lab test pages for lab test codes.
A87.9 (45600441)
G02.0*B00.3 (2000502071)
5013-8 (3008733)
29584-0 (3016018)
26465-5 (3016543)
2880-3 (3019473)
14744-7 (3020044)
26454-9 (3027475)
34563-7 (3044290)
G02.0*B01.0 (2000502072)
G02.0*B02.1 (2000502073)
TAB00 (2001300538)
21598-8 (3016894)
606-4 (3016914)
50373000 (4177340)
60621009 (4245997)
B02.9 (45581143)
R51.80 (2000503603)
10333-3 (3023410)
41602-4 (3033386)
33942-4 (3046896)
G02.0*A87.0 (2000502069)
GD1AA (2001303617)
ERIP (262)
2157-6 (3007220)
22126-7 (3010380)
22118-4 (3011166)
14749-6 (3013826)
22133-3 (3014973)
600-7 (3023368)
51480-2 (3031040)
5894-1 (3033658)
24357-6 (3037467)
1 (38004446)
11 (38004456)
13 (38004458)
44 (38004484)
I10 (45591453)
OMOP4822462 (581458)
22 (8756)
30385-9 (3002385)
28540-3 (3003338)
26515-7 (3007461)
28539-5 (3035941)
30428-7 (3024731)
718-7 (3000963)
20570-8 (3009542)
26464-8 (3010813)
26453-1 (3026361)
ER (9203)
J05AB11 (21603137)
OMOP5117446 (33004)
OMOP4822461 (32036)
93 (38004510)
21 (8717)
26450-7 (3006504)
30180-4 (3022096)
OP (9202)
26485-3 (3019069)
26478-8 (3002030)
1988-5 (3020460)
26511-6 (3018010)
26474-7 (3019198)
26449-9 (3013115)
26484-6 (3001604)
26444-0 (3006315)
2823-3 (3023103)
2951-2 (3019550)
N02BE01 (21604344)
14682-9 (3020564)
58410-2 (40761511)
251B00000X (38004193)
62238-1 (40764999)
R02AX02 (1588667)
M01AE01 (21603967)
1742-6 (3006923)
LabWAS
↥Mortality – FinRegistry
↥Association
Association between endpoint G6_MENINGVIR and mortality.
Females
No dataMales
No dataMortality risk
Mortality risk for people of age
years, who have G6_MENINGVIR.| N-year risk | Females | Males |
|---|---|---|
| 1 | No data | No data |
| 5 | No data | No data |
| 10 | No data | No data |
| 15 | No data | No data |
| 20 | No data | No data |
Relationships between endpoints
↥Index endpoint: G6_MENINGVIR – Meningitis, viral
GWS hits: 1