No definition available.
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
519870 |
1. Apply sex-specific ruleNone |
519870 |
2. Check conditionsNone |
519870 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters: 2 out of 7 registries used, show all original rules. |
213 |
4. Check minimum number of eventsNone |
213 |
5. Include endpointsNone |
213 |
6. Filter based on genotype QC (FinnGen only) |
208 |
Control definitions (FinnGen only)
Controls for this endpoint are individuals that are not cases.
Similar endpoints
↥List of similar endpoints to
Idiopathic hypercalciuria
based on the number of shared cases.
Similar with more cases:
- Disorders of calcium metabolism
- Disorders of mineral metabolism
- Metabolic disorders
- Endocrine, nutritional and metabolic diseases
- Any operation in hilmo
Similar with less cases:
None
Case counts by codes
↥Summary Statistics
↥-FinRegistry-
This endpoint is excluded (different definition than used in FinnGen).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 208 | 111 | 97 |
| Unadjusted period prevalence (%) | 0.04 | 0.04 | 0.04 |
| Median age at first event (years) | 55.15 | 56.98 | 53.06 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 213
- Matched controls
- 2130
TimeCodeWAS
↥TODO / Current known limitations:
- Only showing the top 500 codes, because showing all (sometimes 20k) makes the page too slow.
- Legend / how to read the glyphs.
- Proper column names.
- Show details (e.g. Fisher or Chi-square test, N cases and N controls) when clicking on a row.
- Explanation on the underlying data / how the TimeCodeWAS is done (e.g. matched cases / controls, eligibility).
- Download CSV not working.
- No filters and sorters.
- Limited amount of endpoints with TimeCodeWAS data.
- Cross-links to Risteys lab test pages for lab test codes.
E83.58 (2000501539)
N20.1 (45582395)
SMOKING-2-3-0 (2002330113)
50373000 (4177340)
60621009 (4245997)
NK6QA (2001308500)
C03AA03 (21601466)
C03EA01 (21601543)
14637-3 (3010838)
2589-0 (3012110)
2742-5 (3034780)
N20.0 (45567830)
I10 (45591453)
OP (9202)
19072-8 (3016431)
68438-1 (40771025)
46 (38004485)
2753-2 (3018418)
1995-0 (3021347)
34 (38004474)
2731-8 (3000067)
14879-1 (3003458)
39 (38004479)
OMOP4822462 (581458)
17433-4 (3019225)
2000-8 (3015377)
OMOP5117446 (33004)
11 (38004456)
OMOP4822461 (32036)
6768-6 (3035995)
2951-2 (3019550)
1751-7 (3024561)
2823-3 (3023103)
UKC02 (2001306005)
14682-9 (3020564)
251B00000X (38004193)
62238-1 (40764999)
28539-5 (3035941)
26464-8 (3010813)
26453-1 (3026361)
20570-8 (3009542)
30428-7 (3024731)
26515-7 (3007461)
718-7 (3000963)
28540-3 (3003338)
58410-2 (40761511)
30385-9 (3002385)
LabWAS
↥Mortality – FinRegistry
↥This endpoint is excluded (different definition than used in FinnGen).
Relationships between endpoints
↥Index endpoint: E4_IDIOPATHIC_HYPERCALCIURIA – Idiopathic hypercalciuria
GWS hits: -
This endpoint is excluded (different definition than used in FinnGen).