polycythemia: Abnormally high mass or concentration of red blood cells in the blood, either due to an increase in erythropoiesis or a decrease in plasma volume.
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
519870 |
1. Apply sex-specific ruleNone |
519870 |
2. Check conditionsNone |
519870 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
2 out of 7 registries used, show all original rules. |
950 |
4. Check minimum number of eventsNone |
950 |
5. Include endpointsNone |
950 |
6. Filter based on genotype QC (FinnGen only) |
921 |
Control definitions (FinnGen only)
- Control exclude
- D3_BLOODOTHER
Extra metadata
- Level in the ICD hierarchy
- 4
- First used in FinnGen datafreeze
- DF2
- Parent code in ICD-10
- D75
- Name in latin
- Polycythaemia secundaria
Similar endpoints
↥List of similar endpoints to
Secondary polycythaemia
based on the number of shared cases.
Similar with more cases:
- Other diseases of blood and blood-forming organs
- Other diseases of blood and blood-forming organs, wide
- Diseases of the blood and blood-forming organs and certain disorders involving the immune mechanism
- Any event in hilmo or specialist outpatient
Similar with less cases:
None
Case counts by codes
↥Summary Statistics
↥-FinRegistry-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | |||
| Whole population | 5793 | 1925 | 3795 |
| Only index persons | 4662 | 1564 | 3098 |
| Unadjusted period prevalence (%) | |||
| Whole population | 0.09 | 0.06 | 0.11 |
| Only index persons | 0.10 | 0.06 | 0.12 |
| Median age at first event (years) | |||
| Whole population | 58.75 | 60.79 | 57.65 |
| Only index persons | 57.47 | 60.07 | 56.16 |
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 921 | 326 | 595 |
| Unadjusted period prevalence (%) | 0.22 | 0.12 | 0.27 |
| Median age at first event (years) | 58.55 | 57.35 | 59.20 |
-FinRegistry-
Age distribution of first events
-FinnGen-
Age distribution of first events
-FinRegistry-
Year distribution of first events
-FinnGen-
Year distribution of first events
-FinRegistry-
Cumulative Incidence Function
-FinnGen-
Cumulative Incidence Function
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 950
- Matched controls
- 9500
TimeCodeWAS
↥TODO / Current known limitations:
- Only showing the top 500 codes, because showing all (sometimes 20k) makes the page too slow.
- Legend / how to read the glyphs.
- Proper column names.
- Show details (e.g. Fisher or Chi-square test, N cases and N controls) when clicking on a row.
- Explanation on the underlying data / how the TimeCodeWAS is done (e.g. matched cases / controls, eligibility).
- Download CSV not working.
- No filters and sorters.
- Limited amount of endpoints with TimeCodeWAS data.
- Cross-links to Risteys lab test pages for lab test codes.
D75.1 (45532998)
43113-0 (3032868)
D75.2 (45557096)
50373000 (4177340)
60621009 (4245997)
D75.9 (45576417)
SPAT1074 (2001700175)
D75.0 (45576416)
TPH00 (2001309596)
SMOKING-2-2-0 (2002330110)
SMOKING-2-3-0 (2002330113)
SMOKING-1-1-0 (2002330116)
80187-8 (21494670)
15061-5 (3024172)
E03.9 (45537945)
R71 (45573038)
28900 (2000301664)
2890X (2000402710)
E23.04 (2000501472)
E66.00 (2000501500)
JN1AE (2001305517)
JN3AE (2001305555)
XW000 (2001310618)
WX723 (2001310826)
215 (2001600211)
81861-7 (21494434)
2276-4 (3001122)
24336-0 (3019060)
14196-0 (3023520)
4679-7 (3027945)
51628-6 (3042111)
OMOP5117446 (33004)
82 (38004501)
55429-5 (40758558)
N40 (45563015)
E29.1 (45576454)
J44.8 (45586673)
D45 (45595761)
G03BB02 (21602513)
A14AA01 (21600917)
11 (38004456)
G03BA03 (21602510)
14804-9 (3022250)
715-3 (3021589)
G47.3 (45562094)
751-8 (3013650)
60517-0 (40763571)
58435-9 (40761536)
A10BK01 (1123890)
3034-6 (3004789)
OP (9202)
14798-3 (3022948)
L01XX05 (21603787)
57782-5 (40760892)
A10BK03 (1123740)
13317-3 (3019902)
14913-8 (3017446)
G03CX01 (21602536)
2745-8 (3009343)
2020-6 (3023024)
6 (38004451)
30385-9 (3002385)
69738-3 (42870588)
26484-6 (3001604)
26444-0 (3006315)
26485-3 (3019069)
ER (9203)
26450-7 (3006504)
26449-9 (3013115)
30180-4 (3022096)
11555-0 (3012501)
11557-6 (3013290)
11556-8 (3027315)
Z01.8 (45581003)
26478-8 (3002030)
26474-7 (3019198)
28541-1 (3002179)
26515-7 (3007461)
20570-8 (3009542)
28539-5 (3035941)
26453-1 (3026361)
26464-8 (3010813)
30428-7 (3024731)
718-7 (3000963)
1995-0 (3021347)
62238-1 (40764999)
26511-6 (3018010)
2823-3 (3023103)
2951-2 (3019550)
19072-8 (3016431)
26446-5 (3025159)
C01AA05 (21600234)
R06.0 (45558449)
14933-6 (3026493)
26524-9 (3021440)
26498-6 (3017181)
34714-6 (3032080)
29 (38004472)
58410-2 (40761511)
19875-4 (3001668)
20155-8 (3023550)
69970-2 (42868459)
69982-7 (42868471)
69983-5 (42868472)
11558-4 (3010421)
19926-5 (3011505)
19870-5 (3020158)
20150-9 (3024653)
14682-9 (3020564)
97535-9 (1616796)
96559-0 (36032269)
30383-4 (3000850)
1988-5 (3020460)
1742-6 (3006923)
OMOP4822461 (32036)
G04BE08 (21602653)
10501-5 (3009214)
14631-6 (3006140)
28540-3 (3003338)
I48 (45596206)
2753-2 (3018418)
T90 (2002001131)
R03BB04 (21603296)
251B00000X (38004193)
WX780 (2001310837)
87829-8 (36304419)
SPAT1262 (2001700363)
50949-7 (3029937)
GD1AA (2001303617)
E11.9 (45561952)
C03DA01 (21601534)
46 (38004485)
13967-5 (3004248)
2704-5 (3028626)
1963-8 (3016293)
E11 (45571656)
J96.1 (45557632)
J45.9 (45562456)
C07AB07 (21601689)
51483-6 (3030467)
C03CA01 (21601518)
OMOP4822462 (581458)
E66.2 (45581373)
26 (38004469)
30248-9 (3015399)
A10BJ06 (1501778)
6768-6 (3035995)
B01AA03 (21600965)
14749-6 (3013826)
FB1BD (2001302407)
4537-7 (3013707)
13 (38004458)
SPAT1249 (2001700350)
30405-5 (3018095)
5894-1 (3033658)
252568001 (4091874)
34534-8 (3044889)
2709-4 (3021901)
1925-7 (3003396)
1754-1 (3012516)
60026-2 (40763086)
I10 (45591453)
1751-7 (3024561)
1920-8 (3013721)
14920-3 (3008486)
14683-7 (3009508)
R03AC02 (21603256)
ZXE00 (2001311394)
100898-6 (1761868)
2514-8 (3035350)
R5140 (2001310249)
25428-4 (3009261)
SPAT1250 (2001700351)
32294-1 (3020682)
C08CA01 (21601747)
SPAT1281 (2001700382)
4548-4 (3004410)
21 (8717)
3016-3 (3009201)
C07AB02 (21601684)
22 (8756)
14646-4 (3023602)
IP (9201)
14647-2 (3019900)
47210-0 (3048773)
22748-8 (3001308)
A10BA02 (21600747)
14771-0 (3018251)
N02AX02 (21604298)
N02BE01 (21604344)
A02BC02 (21600097)
J01DB01 (21602870)
N02AJ06 (1123647)
LabWAS
↥Mortality – FinRegistry
↥Association
Association between endpoint D3_SCNDPOLYCYTHAEMIA and mortality.
Females
| Parameter | HR [95% CI] | p-value |
|---|---|---|
| D3_SCNDPOLYCYTHAEMIA | 2.337 [1.94, 2.81] | < 0.001 |
| Birth year | 0.998 [0.99, 1.01] | 0.556 |
During the follow-up period (1.1.1998 — 31.12.2019), 330 out of 1298 females with D3_SCNDPOLYCYTHAEMIA died.
Males
| Parameter | HR [95% CI] | p-value |
|---|---|---|
| D3_SCNDPOLYCYTHAEMIA | 1.929 [1.65, 2.25] | < 0.001 |
| Birth year | 0.985 [0.98, 0.99] | 0.002 |
During the follow-up period (1.1.1998 — 31.12.2019), 574 out of 2522 males with D3_SCNDPOLYCYTHAEMIA died.
Mortality risk
Mortality risk for people of age
years, who have D3_SCNDPOLYCYTHAEMIA.| N-year risk | Females | Males |
|---|---|---|
| 1 | 0.314% | 0.369% |
| 5 | 1.509% | 2.132% |
| 10 | 3.477% | 5.162% |
| 15 | 6.641% | 10.023% |
| 20 | 12.368% | 16.089% |
Relationships between endpoints
↥Index endpoint: D3_SCNDPOLYCYTHAEMIA – Secondary polycythaemia
GWS hits: 2