Benign neoplasm: Female genital organ, unspecified

CD2_BENIGN_FEMALE_GEN_NOS

muscle cancer: A musculoskeletal system cancer that is located_in muscle.

Endpoint definition

↥

Report an error or suggest an improvement for this endpoint codes

Endpoint definition steps	FinnGen
Phenotype data	557745
1. Apply sex-specific rule only females	313377
2. Check conditions None	313377
3. Check pre-conditions, main-only, mode, registry filters Registry filters: Hospital discharge: ICD-10 — D28.9& Hospital discharge: ICD-9 — 221[8-9] Hospital discharge: ICD-8 — 2219 Cause of death: ICD-10 — D28.9& Cause of death: ICD-9 — 221[8-9] Cause of death: ICD-8 — 2219 2 out of 7 registries used, show all original rules.	123
4. Check minimum number of events None	123
5. Include endpoints None	123
6. Filter based on genotype QC (FinnGen only)	111

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy: 3
First used in FinnGen datafreeze: DF2
Parent code in ICD-10: D28
Name in latin: Neoplasma benignum organi genitalis feminini non specificati

NAME	CD2_BENIGN_FEMALE_GEN_NOS
CONTROL_EXCLUDE
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX	2
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	D289
HD_ICD_9	221[8-9]
HD_ICD_8	2219
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	D289
COD_ICD_9	221[8-9]
COD_ICD_8	2219
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

Similar endpoints

↥

List of similar endpoints to Benign neoplasm: Female genital organ, unspecified based on the number of shared cases.

Similar with more cases:

Similar with less cases:

None

Case counts by codes

↥

FinnGen case counts by registry codes:

Upset plot

Full data table

Summary Statistics

↥

-FinRegistry-

Key figures

	All	Female	Male
Number of individuals
Whole population	995	995	-
Only index persons	837	837	-
Unadjusted period prevalence (%)
Whole population	0.03	0.03	-
Only index persons	0.03	0.03	-
Median age at first event (years)
Whole population	-	44.49	-
Only index persons	-	42.31	-

-FinnGen-

Key figures

	All	Female	Male
Number of individuals	111	111	-
Unadjusted period prevalence (%)	0.04	0.04	-
Median age at first event (years)	40.14	40.14	-

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

No data

CodeWAS

↥

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log₁₀(p-value) ≥ 6.

Matched cohort

Matched cases
114: Matched controls
1140

Code

Vocabulary

Description

Odds Ratio

-log₁₀(p)

N matched cases

N matched controls

D28.9

ICD-10 Finland

Benign neoplasm: Female genital organ, unspecified

+∞

84.0

22199

ICD-8 Finland

Benign neoplasm of other female genital organs, Unspecified site

+∞

32.9

LFB10

NOMESCO Finland

Excision of lesion of vulva or perineum

29.0

10.1

2218X

ICD-9 Finland

Benign neoplasm of other female genital organs, Other specified sites of female genital organs

+∞

9.5

LabWAS

↥

N Cases

N Controls

-log₁₀(p)

cases

controls

cases

controls

unit

-log₁₀(p)

N cases

N controls

(40761536) Microorganisms panel - Urine sediment

2.66

3.69

5.0

3.7

—

(3022806) Fractional oxyhemoglobin in Capillary blood

6.13

3.07

1.4

2.6

90.80

89.52

—

(3009035) Cobalamin (Vitamin B12) [Moles/volume] in Serum or Plasma

199

2.01

2.73

2.4

1.8

434.85

488.55

pmol/l

0.61

165

(40767503) Oxygen content in Capillary blood by calculation

4.22

2.62

1.9

2.4

15.86

15.76

—

(1002102) Choriogonadotropin.intact+Beta subunit [Mass/volume] in Serum or Plasma

3.66

2.32

1.9

1.5

57.93

66.20

ug/l

—

(3029937) Albumin [Presence] in Urine by Test strip

321

1.79

2.31

4.4

4.2

0.00

estimate

-0.00

116

(3028369) Herpes simplex virus 1+2 DNA [Presence] in Specimen by NAA with probe detection

5.75

2.23

1.0

1.1

—

(3013290) Carbon dioxide [Partial pressure] in Blood

3.85

2.19

1.4

3.5

4.77

5.01

kpa

—

(3027315) Oxygen [Partial pressure] in Blood

3.85

2.19

1.4

3.5

8.70

9.32

kpa

—

(3020321) Streptococcus agalactiae [Presence] in Vaginal fluid by Organism specific culture

3.06

2.12

2.2

1.5

—

(21492888) Glucose tolerance 2 hours gestational panel - Serum or Plasma

3.23

2.05

1.6

1.7

—

(3022145) Colonoscopy Study observation

130

1.96

2.00

1.6

1.2

—

(3023520) Reticulocytes [#/volume] in Blood

2.04

1.76

2.5

2.7

70.96

76.74

e9/l

0.36

(3026008) Bacteria identified in Urine by Culture

378

1.63

1.76

2.6

3.2

—

(3021960) Folate [Moles/volume] in Serum or Plasma

325

1.64

1.71

1.9

1.7

25.47

23.05

nmol/l

0.35

267

(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip

439

1.60

1.66

4.7

4.0

0.00

0.01

estimate

0.50

101

(3048689) Calprotectin [Mass/mass] in Stool

141

1.79

1.57

3.9

1.9

145.51

113.11

ug/g

0.29

111

(3041096) Erythrocytes [Presence] in Urine by Automated

334

1.57

1.50

4.8

3.6

0.00

estimate

-0.00

100

(3005895) Myoglobin [Mass/volume] in Serum or Plasma

2.50

1.41

1.0

1.4

809.00

147.63

ug/l

—

(3015635) Cytomegalovirus IgM Ab [Units/volume] in Serum or Plasma

3.03

1.37

1.0

1.1

—

(3035995) Alkaline phosphatase [Enzymatic activity/volume] in Serum or Plasma

802

1.67

1.36

9.7

8.0

72.40

77.42

u/l

1.12

740

(3019902) Methicillin resistant Staphylococcus aureus [Presence] in Specimen by Organism specific culture

108

1.79

1.32

3.3

3.5

—

(40760892) CBC W Ordered Manual Differential panel - Blood

261

1.55

1.31

9.3

4.9

—

(3017918) Cytomegalovirus IgG Ab [Titer] in Serum or Plasma

2.86

1.30

1.0

1.1

—

(3026910) Gamma glutamyl transferase [Enzymatic activity/volume] in Serum or Plasma

674

1.50

1.17

3.2

40.43

40.96

u/l

0.03

634

(3010421) pH of Blood

2.42

1.14

1.6

3.2

7.43

—

(3016293) Bicarbonate [Moles/volume] in Serum or Plasma

1.91

1.14

3.3

6.1

24.83

25.25

mmol/l

0.16

(40764999) Glomerular filtration rate [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (CKD-EPI)/1.73 sq M

104

965

1.89

1.10

15.9

15.6

82.08

80.72

ml/min/173m2

0.30

898

(586526) SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with probe detection

2.04

1.06

1.2

1.5

—

(3034780) Angiotensin converting enzyme [Enzymatic activity/volume] in Serum or Plasma

1.95

1.03

1.4

2.7

45.99

40.84

u/l

—

(3022621) pH of Urine by Test strip

1.73

1.03

4.4

2.7

5.80

6.12

—

(3051552) Clostridioides difficile toxin genes [Presence] in Stool by NAA with probe detection

1.83

1.01

1.6

1.5

—

(3019832) Treponema pallidum Ab [Presence] in Serum

126

1.61

0.99

1.8

1.7

—

(3001079) Blood group antibody screen [Presence] in Serum or Plasma

514

1.40

0.98

2.2

2.7

—

estimate

—

(3006504) Eosinophils/Leukocytes in Blood

505

1.40

0.97

5.9

6.0

3.16

2.68

0.74

465

(3022096) Basophils/Leukocytes in Blood

506

1.39

0.95

6.1

6.0

0.78

0.67

0.60

466

(3031040) Bacteria [#/volume] in Urine by Automated count

733

1.42

0.90

5.1

—

297.00

—

(3019284) Hepatitis B virus surface Ag [Presence] in Serum

191

1.47

0.87

1.5

1.7

—

(3030467) Casts [#/volume] in Urine by Automated count

291

1.40

0.87

3.2

3.5

0.53

0.38

e6/l

0.23

197

(3009261) Glucose [Presence] in Urine by Test strip

591

1.37

0.87

5.0

4.3

0.00

estimate

-0.00

120

(3001604) Monocytes [#/volume] in Blood

551

1.37

0.87

6.5

6.0

0.58

0.54

e9/l

0.78

465

(3029511) Human papilloma virus DNA [Presence] in Specimen by NAA with probe detection

1.79

0.84

1.6

—

(40771025) 25-Hydroxyvitamin D3+25-Hydroxyvitamin D2 [Moles/volume] in Serum or Plasma

514

1.35

0.83

3.3

2.6

75.61

78.21

nmol/l

0.36

461

(3006315) Basophils [#/volume] in Blood

554

1.35

0.82

6.5

6.0

0.04

e9/l

0.03

467

(3043109) Cytology report of Tissue fine needle aspirate Cyto stain

1.86

0.80

1.0

1.4

—

(3042194) Human metapneumovirus RNA [Presence] in Specimen by NAA with probe detection

0.00

0.80

0.0

1.5

—

(3040853) Adenovirus DNA [Identifier] in Specimen by NAA with probe detection

0.00

0.80

0.0

1.5

—

(3023368) Bacteria identified in Blood by Culture

259

1.39

0.78

3.6

4.0

—

(3015399) Transferrin receptor.soluble [Mass/volume] in Serum or Plasma

287

1.37

0.77

2.3

2.2

3.19

2.80

mg/l

0.28

247

(3013707) Erythrocyte sedimentation rate [Velocity] in Red Blood Cells by Westergren method

794

1.40

0.77

5.2

4.7

11.24

12.05

mm/h

0.32

726

(46236098) ABO and Rh group [Type] in Blood by Confirmatory method

251

1.38

0.76

1.4

2.2

—

(36031861) Influenza virus A and B and SARS-CoV-2 (COVID-19) and Respiratory syncytial virus RNA panel - Respiratory system specimen by NAA with probe detection

1.69

0.75

2.0

1.7

—

(3001122) Ferritin [Mass/volume] in Serum or Plasma

529

1.33

0.75

3.5

3.2

93.99

77.99

ug/l

0.30

494

(3013115) Eosinophils [#/volume] in Blood

569

1.33

0.75

6.7

6.0

0.20

0.18

e9/l

0.59

488

(40768797) Stomach Pathology biopsy report

153

1.46

0.74

1.2

1.3

—

(36032419) SARS-CoV-2 (COVID-19) Ag [Presence] in Upper respiratory specimen by Immunoassay

2.04

0.73

1.4

2.1

—

(3019198) Lymphocytes [#/volume] in Blood

562

1.32

0.71

6.5

6.0

1.91

1.83

e9/l

0.35

492

(3021589) Normoblasts [#/volume] in Blood

483

1.31

0.71

16.1

11.2

0.00

e9/l

0.50

386

(3021879) Hepatitis B virus core Ab [Presence] in Serum

1.58

0.69

1.1

1.3

—

(3048929) Epstein Barr virus Ab [Presence] in Serum

1.89

0.69

1.2

1.3

—

(3019069) Monocytes/Leukocytes in Blood

504

1.31

0.69

6.2

6.1

8.90

8.42

0.64

468

(3019225) pH of Specimen

1.54

0.68

3.8

4.0

7.37

7.36

—

(3002030) Lymphocytes/Leukocytes in Blood

515

1.30

0.67

6.2

6.0

30.27

27.71

0.72

483

(3016771) Amylase [Enzymatic activity/volume] in Serum or Plasma

342

1.31

0.65

2.5

2.3

55.83

67.36

u/l

0.40

310

(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection

648

1.30

0.64

2.8

3.4

—

(42868674) Cholesterol in HDL/Cholesterol.total [Molar ratio] in Serum or Plasma

131

1.44

0.64

5.1

4.8

35.25

34.41

0.12

(3035350) Ketones [Presence] in Urine by Test strip

589

1.29

0.62

4.9

4.2

0.00

estimate

-0.00

127

(3000855) Microscopic observation [Identifier] in Vaginal fluid by Gram stain

0.00

0.61

0.0

1.7

—

(3009041) Cardiolipin IgG Ab [Units/volume] in Serum by Immunoassay

0.00

0.60

0.0

1.0

—

4.20

—

(3046524) Influenza virus A Ag [Presence] in Nasopharynx by Immunoassay

0.00

0.60

0.0

1.2

—

(3043362) Influenza virus B Ag [Presence] in Nasopharynx by Immunoassay

0.00

0.60

0.0

1.2

—

(3002482) Mycoplasma pneumoniae DNA [Presence] in Specimen by NAA with probe detection

0.00

0.59

0.0

1.5

—

(3001019) Free T4 and TSH panel - Serum or Plasma

1.52

0.58

1.3

2.0

—

(4035726) Immunohistochemistry procedure

108

1.45

0.56

1.3

1.4

—

(3013650) Neutrophils [#/volume] in Blood by Automated count

614

1.27

0.56

8.8

9.7

3.78

4.03

e9/l

0.52

533

(3032080) INR in Blood by Coagulation assay

456

1.26

0.54

10.8

11.4

1.08

1.18

inr

1.06

375

(3021601) Nitrite [Presence] in Urine by Test strip

585

1.26

0.54

4.9

4.2

0.00

estimate

-0.00

121

(3022948) Iron [Moles/volume] in Serum or Plasma

172

1.35

0.53

2.2

2.4

12.72

12.53

umol/l

0.04

157

(3021387) Prolactin [Units/volume] in Serum or Plasma

1.53

0.52

1.0

1.4

364.33

360.40

mu/l

—

(42870588) Differential panel, method unspecified - Blood

351

1.26

0.52

6.6

5.5

—

(3004789) Transferrin [Mass/volume] in Serum or Plasma

157

1.33

0.47

2.1

2.4

2.53

2.40

g/l

0.27

143

(3017143) Hepatitis C virus Ab [Presence] in Serum

130

1.36

0.47

1.2

1.3

—

(3044938) Influenza virus A RNA [Presence] in Specimen by NAA with probe detection

168

1.31

0.44

2.2

1.9

—

(3019309) Folate [Moles/volume] in Red Blood Cells

187

1.29

0.43

2.7

1.7

1237.36

1171.75

nmol/l

0.11

142

(3015235) Bicarbonate [Moles/volume] in Capillary blood

1.54

0.42

1.8

2.2

26.50

24.96

mmol/l

—

(3020565) Legionella pneumophila DNA [Presence] in Specimen by NAA with probe detection

0.00

0.41

0.0

1.7

—

(4268621) Lupus anticoagulant assay

0.00

0.41

0.0

1.7

—

(4195642) Thrombophilia screening test

0.00

0.41

0.0

1.0

—

(40765161) Human bocavirus DNA [Presence] in Specimen by NAA with probe detection

0.00

0.41

0.0

1.3

—

(3041942) Cyclic citrullinated peptide Ab [Units/volume] in Serum

226

1.26

0.41

1.2

1.3

1.24

9.38

u/ml

—

(3004588) Protein electrophoresis panel - Serum or Plasma

1.33

0.40

6.3

1.7

—

(3002256) Pathology report gross observation

152

1.30

0.40

1.5

1.3

—

(3049804) Myeloperoxidase IgG Ab [Units/volume] in Serum

0.00

0.40

0.0

1.0

—

(3044355) Beta 2 glycoprotein 1 IgG Ab [Units/volume] in Serum or Plasma by Immunoassay

0.00

0.40

0.0

1.0

—

1.50

—

(3020287) Protein C actual/normal in Platelet poor plasma by Coagulation assay

0.00

0.40

0.0

1.1

—

115.00

—

(3031478) Chlamydophila pneumoniae DNA [Presence] in Specimen by NAA with probe detection

0.00

0.39

0.0

1.5

—

(3029187) Natriuretic peptide.B prohormone N-Terminal [Mass/volume] in Serum or Plasma

315

1.21

0.36

2.3

3.2

1442.51

1121.94

ng/l

0.20

270

(3029287) Urinalysis microscopic panel [#/volume] - Urine by Automated count

364

1.20

0.36

3.3

3.4

—

(3000494) Fungus identified in Specimen by Culture

127

1.30

0.36

1.3

1.4

—

(3033319) Streptococcus pyogenes Ag [Presence] in Throat

118

1.31

0.35

1.5

—

(3050380) Cytology report of Cervical or vaginal smear or scraping Cyto stain

1.38

0.35

1.5

1.4

—

(3020059) Calcium [Moles/volume] corrected for albumin in Serum or Plasma

231

1.22

0.34

2.7

2.47

2.46

mmol/l

0.05

210

(3027273) Bicarbonate [Moles/volume] in Venous blood

1.32

0.33

1.5

2.3

27.48

24.73

mmol/l

—

(40761511) CBC panel - Blood by Automated count

107

1043

1.42

0.32

15.3

13.3

—

(3024135) Streptococcus.beta-hemolytic [Presence] in Throat by Organism specific culture

226

0.81

0.31

1.4

1.7

—

(3021614) Rheumatoid factor [Units/volume] in Serum or Plasma

243

1.20

0.31

1.4

1.3

37.48

30.52

iu/ml

—

(3012544) pH of Venous blood

103

1.30

0.29

1.6

3.1

7.40

7.39

—

(3011371) Neisseria gonorrhoeae DNA [Presence] in Specimen by NAA with probe detection

1.31

0.29

1.6

1.9

—

(3021347) Calcium.ionized [Moles/volume] in Serum or Plasma

509

1.16

0.28

7.4

5.2

1.22

mmol/l

0.20

465

(43534045) MCM6 gene c.-13910C>T and -13915T>G [Identifier] in Blood or Tissue by Molecular genetics method Nominal

1.25

0.28

1.0

—

(3006217) Methemoglobin/Hemoglobin.total in Arterial blood

1.23

0.27

4.6

7.0

0.80

0.65

—

(3028026) IgM [Mass/volume] in Serum or Plasma

0.69

0.27

4.0

1.8

0.70

1.77

g/l

—

(3014007) Fractional oxyhemoglobin in Arterial blood

1.21

0.27

4.6

7.1

92.63

95.36

—

(3028653) Carboxyhemoglobin/Hemoglobin.total in Arterial blood

1.21

0.27

4.6

7.0

1.43

1.19

—

(3002582) Erythrocytes [#/volume] in Urine

343

1.16

0.27

3.3

3.6

25.55

27.43

e6/l

0.06

246

(3044640) Blood type and Crossmatch panel - Blood

343

1.16

0.27

1.7

2.2

—

(3045783) Sodium and Potassium panel [Moles/volume] - Serum or Plasma

114

1.26

0.26

5.4

6.0

—

(3026493) Urate [Moles/volume] in Serum or Plasma

247

1.18

0.26

2.8

340.79

317.36

umol/l

0.51

218

(40758558) Short blood count panel - Blood

345

0.86

0.25

5.4

6.3

—

(40768804) Tissue Pathology biopsy report

483

1.14

0.24

2.5

2.1

—

(3007164) IgA [Mass/volume] in Serum or Plasma

258

1.17

0.24

1.7

1.4

2.05

2.46

g/l

0.77

144

(46235355) HIV 1 and 2 tests - Meaningful Use set

210

1.18

0.24

1.8

1.9

—

(3027545) Mycoplasma pneumoniae Ab [Presence] in Serum by Immunoassay

1.37

0.24

1.2

1.3

—

(3013721) Aspartate aminotransferase [Enzymatic activity/volume] in Serum or Plasma

366

1.14

0.23

2.4

2.8

30.70

27.31

u/l

0.34

344

(40761535) Cells panel - Urine sediment

1.29

0.23

2.1

3.1

—

(3001308) Cholesterol in LDL [Moles/volume] in Serum or Plasma

1014

0.82

0.22

5.9

6.0

2.66

2.75

mmol/l

0.48

933

(3043924) Respiratory syncytial virus RNA [Identifier] in Specimen by NAA with probe detection

117

1.22

0.22

1.8

—

(3016914) Bacteria identified in Cerebral spinal fluid by Culture

0.00

0.21

0.0

1.5

—

(3027456) Digoxin [Moles/volume] in Serum or Plasma

0.00

0.21

0.0

4.1

—

0.78

—

(3011166) Borrelia burgdorferi Ab [Presence] in Cerebral spinal fluid

0.00

0.21

0.0

1.2

—

(36305771) Cryptosporidium sp DNA [Presence] in Stool by NAA with probe detection

0.00

0.21

0.0

1.3

—

(37020937) Giardia lamblia DNA [Presence] in Stool by NAA with probe detection

0.00

0.21

0.0

1.3

—

(21494670) JAK2 gene exon 14 targeted mutation analysis in Blood or Tissue by Molecular genetics method

0.00

0.21

0.0

1.0

—

(3040359) Human coronavirus NL63 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.1

—

(3042596) Human coronavirus RNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.5

—

(3038546) Human coronavirus OC43 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.1

—

(3041642) Human coronavirus 229E RNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.1

—

(3006257) Acetylcholine receptor Ab [Moles/volume] in Serum

0.00

0.21

0.0

1.0

—

(40763571) Iron/Transferrin [Ratio] in Serum or Plasma

155

1.19

0.21

2.3

2.4

23.38

21.22

0.21

142

(3042975) Streptococcus sp identified in Isolate by Organism specific culture

0.00

0.21

0.0

1.0

—

(3014973) Borrelia burgdorferi IgM Ab [Units/volume] in Cerebral spinal fluid

0.00

0.21

0.0

1.3

—

(3010380) Borrelia burgdorferi IgG Ab [Units/volume] in Cerebral spinal fluid

0.00

0.21

0.0

1.2

—

(3022250) Lactate dehydrogenase [Enzymatic activity/volume] in Serum or Plasma by Lactate to pyruvate reaction

108

1.23

0.21

5.8

3.8

230.23

263.38

u/l

0.68

102

(36660697) Celiac disease serology panel - Serum

112

0.79

0.21

1.1

—

(43054903) Holo-transcobalamin II [Moles/volume] in Serum

497

1.12

0.21

2.4

2.1

99.75

99.96

pmol/l

0.01

226

(40760543) Extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.21

0.0

1.0

—

(3005570) Glucose [Moles/volume] in Urine

0.00

0.21

0.0

3.1

—

(3003265) Liver kidney microsomal Ab [Titer] in Serum by Immunofluorescence

0.00

0.21

0.0

1.0

—

(3043405) Microscopic observation [Identifier] in Specimen by Non-gynecological cytology method

0.00

0.21

0.0

1.1

—

(3004529) Oxygen [Partial pressure] adjusted to patient's actual temperature in Venous blood

1.21

0.20

2.2

3.0

41.73

45.89

—

(3000492) Spirometry study

1.25

0.20

1.5

1.7

—

(3029879) Epithelial cells.squamous [#/volume] in Urine by Automated count

164

0.83

0.20

2.8

3.3

7.37

4.97

e6/l

—

(3002032) Base excess in Venous blood by calculation

100

1.22

0.19

1.3

3.0

3.04

2.25

mmol/l

0.43

(3003694) ABO and Rh group [Type] in Blood

318

0.88

0.18

1.9

1.6

—

(3014576) Chloride [Moles/volume] in Serum or Plasma

138

1.19

0.18

3.3

5.6

101.69

104.22

mmol/l

0.90

138

(3000991) Gas panel - Venous blood

1.23

0.18

3.7

6.4

—

(3018006) Microscopic observation [Identifier] in Cervix by Cyto stain.thin prep

256

0.87

0.18

1.6

1.5

—

(3025941) Bacteria identified in Stool by Culture

1.18

0.18

1.4

1.2

—

(3004716) Salmonella sp identified in Stool by Organism specific culture

1.14

0.17

3.3

1.3

—

(3025839) Triglyceride [Moles/volume] in Serum or Plasma

479

0.90

0.17

1.9

1.34

1.35

mmol/l

0.02

395

(3030306) Epithelial cells.non-squamous [#/volume] in Urine by Automated count

178

1.15

0.16

2.4

3.2

0.95

1.02

e6/l

0.07

(3038288) Influenza virus B RNA [Presence] in Specimen by NAA with probe detection

111

1.19

0.16

1.8

1.9

—

(3003396) Base excess in Arterial blood by calculation

119

0.82

0.16

10.4

5.9

2.76

1.06

mmol/l

—

107

(3015736) pH of Urine

467

0.91

0.16

3.3

3.8

6.31

6.27

0.10

256

(3006093) Chlamydia trachomatis DNA [Presence] in Specimen by NAA with probe detection

1.17

0.16

1.7

1.9

—

(3020460) C reactive protein [Mass/volume] in Serum or Plasma

103

1011

1.19

0.15

16.3

15.6

18.88

21.06

mg/l

0.27

813

(3019150) Specific gravity of Urine by Refractometry

251

0.90

0.13

3.7

4.3

1.02

kg/l

0.41

165

(3019050) Tissue transglutaminase IgA Ab [Units/volume] in Serum

301

0.91

0.12

1.5

1.3

0.47

2.00

u/ml

—

(3016431) Calcium.ionized [Moles/volume] adjusted to pH 7.4 in Serum or Plasma

558

1.08

0.11

7.4

5.9

1.22

mmol/l

0.04

471

(1761868) Lipid panel - Serum or Plasma

390

1.08

0.11

3.5

3.1

—

(3044254) Respiratory syncytial virus RNA [Presence] in Specimen by NAA with probe detection

1.17

0.10

2.2

1.9

—

(46235759) Influenza virus B RNA [Presence] in Nasopharynx by NAA with probe detection

1.14

0.10

2.4

1.9

—

(3003785) Carcinoembryonic Ag [Mass/volume] in Serum or Plasma

116

1.14

0.10

3.9

5.1

4.20

12.69

ug/l

—

(3007853) Bacteria identified in Skin by Aerobe culture

116

1.14

0.10

1.7

1.5

—

(3010156) C reactive protein [Mass/volume] in Serum or Plasma by High sensitivity method

1.09

0.10

1.4

1.9

3.32

2.93

mg/l

—

(3016251) Hemoglobin.gastrointestinal [Presence] in Stool

1.14

0.09

2.3

—

(4024509) Urine culture

1.04

0.08

1.7

—

(3046870) Tissue transglutaminase IgG Ab [Units/volume] in Serum

0.82

0.08

1.2

1.1

—

(3003510) Neisseria gonorrhoeae DNA [Presence] in Urine by NAA with probe detection

118

1.11

0.07

1.8

2.1

—

(3019900) Cholesterol [Moles/volume] in Serum or Plasma

1001

0.92

0.06

5.1

5.2

4.69

4.76

mmol/l

0.28

926

(3024950) Chlamydia trachomatis DNA [Presence] in Urine by NAA with probe detection

130

1.09

0.05

1.9

2.2

—

(3018095) Leukocytes [#/volume] in Urine

408

1.05

0.04

3.6

4.5

79.48

59.87

e6/l

0.18

260

(3042936) Bacteria identified in Isolate by Culture

148

0.94

0.02

1.7

2.0

—

(3004410) Hemoglobin A1c/Hemoglobin.total in Blood

952

1.05

0.02

6.6

6.4

37.37

39.01

mmol/mol

1.51

887

(3009201) Thyrotropin [Units/volume] in Serum or Plasma

983

1.05

0.01

7.2

6.2

1.56

1.88

mu/l

2.59

913

(3019800) Troponin T.cardiac [Mass/volume] in Serum or Plasma

393

1.03

0.01

5.1

3.9

15.04

36.46

ng/l

1.36

270

(3018418) pH of Serum or Plasma

359

1.00

0.00

5.7

3.6

7.40

0.35

254

(3051714) Fibrin D-dimer FEU [Mass/volume] in Platelet poor plasma

267

1.01

0.00

1.7

0.72

1.25

mg/l

1.14

220

(3012516) Albumin [Mass/volume] in Urine

337

1.01

0.00

3.0

3.1

57.94

27.62

mg/l

0.30

201

(3009508) Creatinine [Moles/volume] in Urine

353

0.99

0.00

3.0

6.99

7.08

mmol/l

0.04

284

(3020682) Albumin/Creatinine [Ratio] in Urine

345

1.02

0.00

4.0

3.7

5.87

6.22

mg/mmol

0.02

191

(3023602) Cholesterol in HDL [Moles/volume] in Serum or Plasma

995

0.96

0.00

5.1

5.0

1.61

1.58

mmol/l

0.36

912

(3018251) Fasting glucose [Moles/volume] in Serum or Plasma

985

0.96

0.00

5.6

5.2

5.73

5.82

mmol/l

0.43

907

(4010399) Spirometry for bronchospasm with prolonged evaluation after bronchodilator

1.06

0.00

1.4

1.5

—

(3048773) Triglyceride [Moles/volume] in Serum or Plasma --fasting

936

1.02

0.00

4.2

1.20

1.21

mmol/l

0.08

845

(3024263) Appearance of Synovial fluid

0.00

0.0

1.0

—

(44790048) Parainfluenza type 2 nucleic acid detection

0.00

0.0

2.0

—

(21494815) CD4 cells/Lymphocytes in Specimen

0.00

0.0

2.0

—

38.42

—

(44790047) Parainfluenza type 1 nucleic acid detection

0.00

0.0

2.0

—

(40764127) Haemophilus influenzae DNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.6

—

(3009343) pH of Capillary blood

1.02

0.00

2.2

3.1

7.45

7.43

—

(3049506) Microalbumin [Mass/time] in Urine collected for unspecified duration

0.00

0.0

1.6

—

(3002619) Bacteria identified in Specimen by Culture

0.00

0.0

1.2

—

(21494755) Public health laboratory ask at order entry panel

0.97

0.00

1.6

1.3

—

(40764126) Parainfluenza virus RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.5

—

(3012441) Differential panel - Pleural fluid

0.00

0.0

1.1

—

(3045156) Carbon dioxide [Partial pressure] adjusted to patient's actual temperature in Arterial blood

0.00

0.0

1.8

—

4.63

—

(3022803) Oxygen [Partial pressure] adjusted to patient's actual temperature in Arterial blood

0.00

0.0

1.8

—

10.78

—

(3030692) Respiratory virus DNA+RNA [Identifier] in Specimen by NAA with probe detection

0.00

0.0

1.6

—

(3011363) Streptococcus pneumoniae Ag [Presence] in Urine

0.00

0.0

1.1

—

(3003171) Aldosterone [Moles/volume] in Serum or Plasma --upright

0.00

0.0

1.2

—

383.00

—

(40758895) Direct antiglobulin test.complement C3d specific reagent [Presence] on Red Blood Cells

0.00

0.0

3.0

—

(21493690) Lymphocyte T-cell and B-cell and Natural killer subsets panel - Blood

0.00

0.0

1.8

—

(3045066) Thymidine kinase [Enzymatic activity/volume] in Serum

0.00

0.0

1.2

—

43.60

—

(3032699) Streptococcus pneumoniae DNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.6

—

(44790049) Parainfluenza type 3 nucleic acid detection

0.00

0.0

2.0

—

(3032700) Glomerular basement membrane Ab [Units/volume] in Serum

0.00

0.0

1.4

—

(21494434) Karyotype in Bone marrow

0.00

0.0

1.0

—

(21491868) Cryoglobulin [Mass/volume] in Serum

0.00

0.0

1.0

—

(3021197) Magnesium Ionized [Moles/volume] in Serum or Plasma

0.00

0.0

2.0

—

0.61

—

(3033386) Bacteria [Presence] in Cerebral spinal fluid by Light microscopy

0.00

0.0

1.8

—

(44806118) Parainfluenza type 4 nucleic acid detection

0.00

0.0

2.0

—

(3013727) Leukocytes other/Leukocytes in Blood

0.00

0.0

4.0

—

52.40

—

(3046294) Neutrophil cytoplasmic Ab.classic [Titer] in Serum

0.00

0.0

1.0

—

(44817194) Complement alternate pathway AH50 actual/normal in Serum by Immunoassay

0.00

0.0

1.0

—

96.00

—

(40768806) Pleura Pathology biopsy report

0.00

0.0

1.4

—

(40758897) Direct antiglobulin test.IgG specific reagent [Presence] on Red Blood Cells

0.00

0.0

3.0

—

(21493195) Respiratory pathogens DNA and RNA tested for in Respiratory system specimen by NAA with probe detection

0.00

-0.00

0.0

1.0

—

(3000208) Alpha tocopherol [Moles/volume] in Serum or Plasma

0.00

-0.00

0.0

1.1

—

32.43

—

(3002148) Methylenedioxymethamphetamine [Presence] in Urine by Screen method

0.00

-0.00

0.0

1.0

—

(3051651) Icteric interference index of Serum or Plasma

0.00

-0.00

0.0

2.5

—

1.00

—

(3006262) Parainfluenza virus 3 RNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

1.1

—

(42868544) Hantavirus puumala IgM Ab [Presence] in Serum or Plasma by Immunofluorescence

0.00

-0.00

0.0

1.2

—

(3025634) Parainfluenza virus 1 RNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

1.1

—

(3003434) Protein [Mass/volume] in Pleural fluid

0.00

-0.00

0.0

1.2

—

33.81

—

(3028167) CD3+CD4+ (T4 helper) cells [#/volume] in Blood

0.00

-0.00

0.0

1.3

—

0.37

—

(3048518) aPTT.lupus sensitive actual/normal (normalized LA screen)

0.00

-0.00

0.0

1.0

—

1.06

—

(3006922) Hepatitis E virus Ab [Presence] in Serum

0.00

-0.00

0.0

1.0

—

(3025023) Rhinovirus RNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

1.9

—

(3021236) Streptolysin O Ab [Units/volume] in Serum or Plasma

0.00

-0.00

0.0

1.5

—

94.98

—

(3016881) Enterovirus RNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

1.7

—

(3020013) Alkaline phosphatase.intestinal [Enzymatic activity/volume] in Serum or Plasma

0.00

-0.00

0.0

1.5

—

10.50

—

(3053028) Streptococcus sp identified in Specimen by Organism specific culture

0.00

-0.00

0.0

1.1

—

(40763082) Lactate dehydrogenase [Enzymatic activity/volume] in Pleural fluid by Lactate to pyruvate reaction

0.00

-0.00

0.0

1.0

—

277.00

—

(40768441) Liver Pathology biopsy report

0.00

-0.00

0.0

1.2

—

(40757494) Bilirubin.total [Moles/volume] in Blood

0.00

-0.00

0.0

1.8

—

(3010517) Carboxyhemoglobin/Hemoglobin.total in Venous blood

1.00

-0.00

1.3

2.4

1.03

1.19

—

(40759883) Oligoclonal Bands IgG [Presence] in Cerebral spinal fluid by Isoelectric focusing

0.00

-0.00

0.0

1.0

—

(3029023) Hepatitis E virus IgG Ab [Presence] in Serum by Immunoassay

0.00

-0.00

0.0

1.0

—

(3038297) Parainfluenza virus 4 RNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

1.1

—

(3016894) Varicella zoster virus DNA [Presence] in Cerebral spinal fluid by NAA with probe detection

0.00

-0.00

0.0

1.3

—

(3029075) Extractable nuclear Ab panel - Serum

0.00

-0.00

0.0

1.1

—

(3036185) Alkaline phosphatase.liver 2 [Enzymatic activity/volume] in Serum or Plasma

0.00

-0.00

0.0

1.3

—

24.33

—

(40768443) Skin Pathology biopsy report

0.94

-0.00

1.0

1.3

—

(3011436) Histone Ab [Units/volume] in Serum

0.00

-0.00

0.0

1.3

—

(46235128) Lupus anticoagulant aPTT and dRVVT screening panel W Reflex

0.00

-0.00

0.0

1.0

—

(3036782) Glucose [Moles/volume] in Pleural fluid

0.00

-0.00

0.0

1.1

—

6.53

—

(3024889) Methemoglobin/Hemoglobin.total in Venous blood

1.00

-0.00

1.3

2.4

0.65

0.61

—

(3000108) Respiratory syncytial virus B RNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

1.0

—

(1001509) Gas and Carbon monoxide and Electrolytes panel - Arterial blood

0.00

-0.00

0.0

1.1

—

(3012158) Parainfluenza virus 2 RNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

1.1

—

(3036432) Mycobacterium tuberculosis genotype [Identifier] in Isolate

0.00

-0.00

0.0

9.9

—

(3045788) Cell count panel - Pleural fluid

0.00

-0.00

0.0

1.2

—

(3035062) Alkaline phosphatase.liver 1 [Enzymatic activity/volume] in Serum or Plasma

0.00

-0.00

0.0

1.3

—

57.83

—

(3023323) Follitropin [Units/volume] in Serum or Plasma

0.95

-0.00

1.3

29.78

21.63

iu/l

—

(3005757) Coagulation factor V activity actual/normal in Platelet poor plasma by Coagulation assay

0.00

-0.00

0.0

1.5

—

105.67

—

(3037692) Legionella sp identified in Specimen by Organism specific culture

0.00

-0.00

0.0

1.3

—

(3028433) Virus identified in Specimen by Culture

0.00

-0.00

0.0

1.4

—

(3005156) Respiratory syncytial virus A RNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

1.0

—

(3046896) Herpes virus 6 DNA [Presence] in Cerebral spinal fluid by NAA with probe detection

0.00

-0.00

0.0

1.0

—

(3037875) Bordetella parapertussis DNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

1.5

—

(3002222) Hepatitis E virus IgM Ab [Presence] in Serum

0.00

-0.00

0.0

1.0

—

(3008898) HLA-B27 [Presence]

0.98

-0.00

1.0

1.1

—

(3009595) Pneumocystis jirovecii DNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

1.6

—

Mortality – FinRegistry

↥

Association

Association between endpoint CD2_BENIGN_FEMALE_GEN_NOS and mortality.

Females

No data

Males

No data

Mortality risk

Mortality risk for people of age

years, who have CD2_BENIGN_FEMALE_GEN_NOS.

N-year risk	Females	Males
1	No data	No data
5	No data	No data
10	No data	No data
15	No data	No data
20	No data	No data

Relationships between endpoints

↥

Index endpoint: CD2_BENIGN_FEMALE_GEN_NOS – Benign neoplasm: Female genital organ, unspecified

GWS hits: -

Endpoint

Case Overlap

Survival Analysis

Genetic Correlations

Genetic Signals

N (Jaccard index)

HR [CI]

rg [CI]

Hits

Coloc Hits

FinRegistry

FinnGen

FinRegistry

FinnGen

Loading data

Benign neoplasm: Female genital organ, unspecified

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

1. Apply sex-specific rule

2. Check conditions

3. Check pre-conditions, main-only, mode, registry filters

4. Check minimum number of events

5. Include endpoints

6. Filter based on genotype QC (FinnGen only)

Similar endpoints

Case counts by codes

Summary Statistics

-FinRegistry-

Key figures

-FinnGen-

Key figures

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

CodeWAS

Matched cohort

LabWAS

Mortality – FinRegistry

Association

Females

Males

Mortality risk

Relationships between endpoints