No definition available.
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
519870 |
1. Apply sex-specific ruleNone |
519870 |
2. Check conditionsNone |
519870 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
3 out of 7 registries used, show all original rules. |
322 |
4. Check minimum number of eventsNone |
322 |
5. Include endpointsNone |
322 |
6. Filter based on genotype QC (FinnGen only) |
311 |
Control definitions (FinnGen only)
- Control exclude
- C3_CANCER, C3_CANCER_WIDE
Extra metadata
- First used in FinnGen datafreeze
- DF12
Similar endpoints
↥List of similar endpoints to
Malignant neoplasm of base of tongue, including Hilmo
based on the number of shared cases.
Similar with more cases:
- Malignant neoplasm of tongue, including Hilmo
- Malignant neoplasm of oral cavity, including Hilmo
- Malignant neoplasm of head and neck, including Hilmo
- Solid cancers, including Hilmo
- Malignant neoplasm, wide definition
Similar with less cases:
Case counts by codes
↥Summary Statistics
↥-FinRegistry-
This endpoint is excluded (different definition than used in FinnGen).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 311 | 87 | 224 |
| Unadjusted period prevalence (%) | 0.08 | 0.03 | 0.10 |
| Median age at first event (years) | 63.50 | 62.87 | 63.74 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 322
- Matched controls
- 3220
TimeCodeWAS
↥TODO / Current known limitations:
- Only showing the top 500 codes, because showing all (sometimes 20k) makes the page too slow.
- Legend / how to read the glyphs.
- Proper column names.
- Show details (e.g. Fisher or Chi-square test, N cases and N controls) when clicking on a row.
- Explanation on the underlying data / how the TimeCodeWAS is done (e.g. matched cases / controls, eligibility).
- Download CSV not working.
- No filters and sorters.
- Limited amount of endpoints with TimeCodeWAS data.
- Cross-links to Risteys lab test pages for lab test codes.
C02.11 (2000500474)
OMOP4998263 (36768587)
C77.0 (45590925)
UJC01 (2001304676)
130 (2001600128)
C61 (45547509)
EJA10 (2001302171)
EMB10 (2001302265)
EN1BD (2001302281)
ENA10 (2001302303)
GBB00 (2001303560)
GDA98 (2001303682)
JDB10 (2001304713)
PJD81 (2001309645)
261QX0200X (38004268)
90 (38004507)
C01 (45571487)
C83.31 (2000501224)
D10.10 (2000501276)
D37.08 (2000501349)
EP1CG (2001302289)
PJD71 (2001309644)
WF002 (2001310701)
ZX012 (2001311468)
504 (2001600363)
SMOKING-2-2-0 (2002330110)
SMOKING-2-3-0 (2002330113)
SMOKING-1-1-0 (2002330116)
A04AA02 (21600494)
33718-8 (3043109)
50373000 (4177340)
60621009 (4245997)
R59.0 (45534459)
C02.4 (45561780)
R22.1 (45592412)
C02.10 (2000500473)
YA1AD (2001300718)
YA1BD (2001300719)
YA1CD (2001300720)
UDH02 (2001301680)
UDQ12 (2001301827)
EJB20 (2001302176)
EP1AE (2001302284)
GD1BD (2001303621)
TJD20 (2001304799)
WB103 (2001310627)
WD125 (2001310680)
WZC10 (2001310887)
WZC20 (2001310890)
JN4JR (2001310913)
JN4KR (2001310914)
JN5DR (2001310926)
ZX070 (2001311478)
ZX090 (2001311480)
ZX095 (2001311481)
OMOP4999962 (36770283)
19 (38004464)
8070/3-C01.9 (44503541)
C78.0 (45537839)
R22.9 (45577788)
YA1VG (2001300722)
EB1HA (2001301913)
EBA15 (2001301927)
JCW98 (2001304655)
QA1S1 (2001309815)
SCA02 (2001310303)
SCA04 (2001310305)
WF003 (2001310702)
WX402 (2001310806)
WX408 (2001310808)
WZC00 (2001310885)
ZXD10 (2001311387)
ZXE00 (2001311394)
Z2221 (2001311556)
R21 (2002000891)
A03FA01 (21600484)
A04AA01 (21600493)
A04AD12 (21600505)
D01AA01 (21601911)
G01AA01 (21602363)
N02AB03 (21604272)
S02CA04 (21605176)
890-4 (3001079)
11524-6 (3013512)
14338-8 (3013742)
34531-4 (3044640)
1223G0001X (38003675)
4 (38004449)
117617002 (4035726)
66121-5 (40768804)
8085/3-C01.9 (42511780)
Z50.8 (45556842)
A04AA55 (45893275)
P01AB51 (45893518)
OMOP4822458 (581477)
21 (8717)
ER (9203)
OP (9202)
2601-3 (3012095)
SAA03 (2001310276)
22 (8756)
5894-1 (3033658)
1988-5 (3020460)
IP (9201)
C5 (903277)
2000-8 (3015377)
R4110 (2001310233)
OMOP4822461 (32036)
62238-1 (40764999)
R13 (45573013)
106 (44777669)
OMOP5117446 (33004)
14682-9 (3020564)
34714-6 (3032080)
30385-9 (3002385)
751-8 (3013650)
A06AD11 (21600571)
2951-2 (3019550)
14631-6 (3006140)
GD1AA (2001303617)
2823-3 (3023103)
26464-8 (3010813)
718-7 (3000963)
26453-1 (3026361)
20570-8 (3009542)
26515-7 (3007461)
28539-5 (3035941)
30428-7 (3024731)
J01CE02 (21602842)
J01CE10 (21602850)
58410-2 (40761511)
55429-5 (40758558)
N02AA05 (21604260)
1751-7 (3024561)
N02AX02 (21604298)
WX110 (2001310767)
ZXE10 (2001311401)
M01AE03 (21603969)
14749-6 (3013826)
A02BC05 (21600100)
TPH07 (2001309747)
J01DB01 (21602870)
251B00000X (38004193)
K04.5 (45586691)
28540-3 (3003338)
R4190 (2001310243)
Z3226 (2001311560)
77397-8 (46236098)
N02AJ06 (1123647)
6768-6 (3035995)
882-1 (3003694)
14879-1 (3003458)
ERIP (262)
19072-8 (3016431)
UJD10 (2001304788)
24 (38004467)
R2130 (2001310196)
K05.30 (2000502728)
30180-4 (3022096)
26450-7 (3006504)
OMOP4822462 (581458)
S02CA06 (21605178)
26485-3 (3019069)
1742-6 (3006923)
34534-8 (3044889)
1995-0 (3021347)
69738-3 (42870588)
26444-0 (3006315)
A01AA01 (21600005)
K02.1 (45548134)
26484-6 (3001604)
26449-9 (3013115)
26511-6 (3018010)
26478-8 (3002030)
H02AB02 (21602730)
26474-7 (3019198)
K08.1 (45591573)
715-3 (3021589)
600-7 (3023368)
D01AA20 (21601918)
29265-6 (3020059)
33863-2 (3030366)
J02AC01 (21603080)
EBA00 (2001301923)
WZC30 (2001310891)
WX290 (2001310792)
A02AA04 (21600052)
G04BX01 (21602658)
2075-0 (3014576)
R02AX02 (1588667)
M01AE01 (21603967)
A07AA02 (21600604)
11 (38004456)
WX002 (2001310758)
K05.31 (2000502729)
GD1UA (2001303652)
S03CA01 (21605206)
64 (38004489)
N02BE01 (21604344)
SCA01 (2001310302)
R07.0 (45592406)
77147-7 (46236952)
261Q00000X (38004207)
620-5 (3007853)
Z51.5 (45547323)
2753-2 (3018418)
546-2 (3024135)
SBB10 (2001310299)
SDA03 (2001310328)
H03AA01 (21602754)
LabWAS
↥Mortality – FinRegistry
↥This endpoint is excluded (different definition than used in FinnGen).
Relationships between endpoints
↥Index endpoint: C3_BASEOFTONGUE_WIDE – Malignant neoplasm of base of tongue, including Hilmo
GWS hits: -
This endpoint is excluded (different definition than used in FinnGen).