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Arthropathy in hypersensitivity reactions classified elsewhere

ARTHROPATHY_HYPERSENS

arthritis: An inflammatory process affecting a joint. Causes include infection, autoimmune processes, degenerative processes, and trauma. Signs and symptoms may include swelling around the affected joint and pain.

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Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

557745

1. Apply sex-specific rule

None

557745

2. Check conditions

None

557745

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

2 out of 7 registries used, show all original rules.

52

4. Check minimum number of events

None

52

5. Include endpoints

None

52

6. Filter based on genotype QC (FinnGen only)

49

Control definitions (FinnGen only)

Control exclude
SYSTINOTH_FG

Extra metadata

First used in FinnGen datafreeze
DF2

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 839 349 489
Only index persons 660 280 380
Unadjusted period prevalence (%)
Whole population 0.01 0.01 0.01
Only index persons 0.01 0.01 0.01
Median age at first event (years)
Whole population 8.38 8.71 8.09
Only index persons 11.65 12.89 10.73

-FinnGen-

Key figures

All Female Male
Number of individuals 49 29 20
Unadjusted period prevalence (%) 0.01 0.01 0.01
Median age at first event (years) 31.30 28.31 35.63

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

Matched cohort

Matched cases
50
Matched controls
500
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
M36.4*D69.0
ICD-10 Finland
Arthropathy in Henoch(-Schönlein) purpura
+∞
64.2
47
*
D69.0
ICD-10 Finland
Allergic purpura
388.8
34.5
31
*
N08.2*D69.0
ICD-10 Finland
Glomerular disorders in Henoch(-Schönlein) purpura
+∞
15.4
14
*
H02AB06
ATC
prednisolone; systemic
6.5
9.3
35
132
M36.4
ICD-10 Finland
Arthropathy in hypersensitivity reactions classified elsewhere
+∞
8.6
8
*
KA3AT
NOMESCO Finland
Biopsy of kidney with ultrasound guidance
53.7
8.0
9
*
N08.2
ICD-10 Finland
Glomerular disorders in blood diseases and disorders involving the immune mechanism
+∞
7.5
7
*
A12AX
ATC
Calcium, combinations with vitamin D and/or other drugs
4.6
6.6
25
89
L95.9
ICD-10 Finland
Vasculitis limited to skin, unspecified
+∞
6.4
6
*

LabWAS

OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
29
44
14.31
20.92
1.8
1.4
457.14
458.18
titre
—
7
11
21
10
34.84
16.43
2.1
1.2
—
—
—
0
0
17
17
14.48
10.02
1.5
1.1
0.24
0.25
g/l
0.12
17
17
17
18
13.65
9.75
1.5
1.1
1.26
1.21
g/l
0.29
17
18
14
14
13.36
8.17
1.5
4.2
—
—
—
0
0
33
139
5.04
7.16
10.0
3.1
32.75
45.97
e6/l
0.24
26
104
17
31
7.74
7.14
8.6
11.7
7.89
6.77
mmol/l
0.28
17
31
18
47
5.42
7.00
5.6
2.9
28.17
29.00
s
0.43
18
47
33
141
4.94
6.99
13.5
5.9
—
—
—
0
0
39
197
5.45
6.49
13.8
6.1
0.63
0.63
%
0.01
39
192
39
200
5.32
6.28
13.7
6.0
2.34
2.81
%
0.62
39
194
33
150
4.53
6.23
12.3
4.6
35.80
35.93
g/l
0.04
33
145
39
201
5.27
6.22
13.8
6.0
7.39
8.48
%
2.43
39
196
35
167
4.65
6.16
12.7
3.8
9.15
29.79
e6/l
2.20
27
109
14
26
7.04
5.76
2.9
3.5
74.11
68.91
e9/l
—
9
14
28
121
3.99
5.49
10.0
2.8
0.06
0.41
e6/l
1.51
20
85
28
123
3.90
5.33
1.9
1.5
3.04
2.14
g/l
1.85
23
67
23
90
3.88
5.14
8.6
2.8
2.84
6.18
e6/l
1.69
23
83
27
120
3.72
4.97
10.4
2.8
—
—
estimate
—
0
0
10
16
7.51
4.56
1.5
1.3
—
—
—
0
0
15
47
4.13
4.49
1.3
1.7
—
—
—
0
0
7
6
13.26
4.42
1.4
1.0
—
—
—
0
0
10
17
7.05
4.39
1.2
1.1
—
—
—
0
0
27
140
3.02
3.58
9.4
5.8
—
—
—
0
0
13
40
4.03
3.47
8.8
10.9
—
—
—
0
0
12
35
4.18
3.40
9.0
12.1
4.98
5.10
kpa
0.24
12
35
11
30
4.40
3.34
10.9
11.7
—
—
—
0
0
9
21
4.98
3.17
12.7
11.2
0.93
1.15
mg/l
—
9
21
19
86
2.95
3.14
1.4
1.6
—
—
—
0
0
28
160
2.70
2.95
13.2
9.2
1.22
1.22
mmol/l
0.08
28
152
5
6
9.07
2.81
1.0
1.0
—
—
—
0
0
12
44
3.27
2.78
2.1
1.8
—
—
—
0
0
30
182
2.62
2.74
6.8
3.1
5.66
6.32
ph
3.11
16
96
35
230
2.74
2.70
7.0
3.4
0.00
0.00
estimate
—
5
40
11
38
3.42
2.62
7.5
5.7
24.30
24.18
mmol/l
0.07
11
38
5
7
7.77
2.61
1.2
1.0
—
—
—
0
0
35
234
2.65
2.54
6.8
3.4
0.00
0.00
estimate
—
5
41
12
47
3.04
2.49
7.3
8.5
5.62
5.70
kpa
0.15
12
47
18
89
2.60
2.45
5.3
3.8
—
—
—
0
0
35
237
2.59
2.43
7.0
3.5
0.00
0.00
estimate
—
5
36
5
8
6.79
2.43
1.4
6.4
31.48
33.39
mg/l
—
5
8
5
8
6.79
2.43
1.4
6.4
23.34
26.05
mg/l
—
5
8
10
37
3.12
2.22
6.7
14.5
22.88
24.88
mmol/l
—
10
37
33
223
2.41
2.22
4.3
2.7
176.68
87.31
ug/l
0.50
33
208
31
205
2.35
2.17
15.3
9.0
0.00
0.00
e9/l
-0.00
26
153
21
118
2.34
2.14
4.0
2.0
47.38
53.81
u/l
0.69
21
109
5
12
4.50
1.87
1.0
1.3
—
—
—
0
0
6
18
3.64
1.80
1.2
1.3
—
—
—
0
0
5
13
4.14
1.76
2.2
2.2
—
—
—
0
0
6
19
3.44
1.72
1.2
1.4
—
—
—
0
0
16
87
2.23
1.71
1.8
1.8
—
—
—
0
0
16
87
2.23
1.71
2.8
3.1
385.81
322.74
umol/l
1.55
16
76
8
32
2.78
1.68
9.7
3.6
7.22
7.26
ph
—
8
24
18
107
2.07
1.52
4.2
2.6
—
—
—
0
0
7
28
2.74
1.51
1.3
1.1
—
—
—
0
0
9
41
2.45
1.46
4.1
1.3
—
—
—
0
0
5
17
3.15
1.39
1.2
2.5
41.40
89.00
u/ml
—
5
17
34
404
0.50
1.30
5.1
4.5
2.03
1.86
mu/l
0.47
34
374
18
117
1.84
1.15
1.7
1.7
—
—
—
0
0
5
21
2.53
1.11
12.6
17.6
10.58
9.06
kpa
—
5
21
5
22
2.41
1.06
1.2
1.1
—
—
—
0
0
7
35
2.16
1.05
4.7
11.9
1.36
1.27
mmol/l
—
7
35
19
129
1.76
1.04
4.7
2.0
—
—
—
0
0
6
29
2.21
0.93
1.3
1.9
—
—
—
0
0
8
45
1.92
0.89
3.5
2.3
—
—
—
0
0
20
145
1.63
0.84
1.9
2.4
—
—
—
0
0
9
53
1.85
0.81
1.4
1.2
—
—
—
0
0
19
139
1.59
0.76
1.5
1.4
1.10
1.25
u/ml
—
8
34
17
122
1.60
0.73
4.5
2.5
2.31
2.38
mmol/l
0.55
17
111
7
43
1.73
0.70
10.6
9.1
6.71
5.09
kpa
—
7
43
0
19
0.00
0.62
0.0
2.2
—
—
—
0
0
6
35
1.81
0.60
1.3
2.2
—
—
—
0
0
6
35
1.81
0.60
1.0
1.3
96.40
155.52
u/ml
—
6
35
13
92
1.56
0.58
3.8
5.2
—
—
—
0
0
18
146
1.36
0.40
2.7
1.7
89.94
93.62
pmol/l
0.08
11
69
6
42
1.49
0.37
1.2
1.1
—
—
—
0
0
6
43
1.45
0.36
9.0
9.8
101.67
104.88
mmol/l
—
6
43
5
38
1.35
0.24
1.2
1.3
—
—
—
0
0
8
103
0.73
0.24
1.9
1.9
—
—
—
0
0
17
195
0.81
0.23
5.4
2.5
—
—
estimate
—
0
0
41
389
1.30
0.23
34.6
13.9
13.68
13.32
%
0.85
41
383
9
110
0.78
0.23
3.9
3.4
—
—
—
0
0
0
11
0.00
0.21
0.0
1.1
—
—
—
0
0
0
10
0.00
0.21
0.0
1.1
—
—
—
0
0
0
10
0.00
0.21
0.0
1.5
—
—
—
0
0
0
10
0.00
0.21
0.0
1.9
—
5.46
—
0
5
6
47
1.31
0.21
1.7
1.3
—
—
—
0
0
0
12
0.00
0.21
0.0
1.9
—
—
—
0
0
0
12
0.00
0.21
0.0
1.3
—
—
—
0
0
0
13
0.00
0.21
0.0
1.0
—
2.07
—
0
5
0
13
0.00
0.21
0.0
1.0
—
7.36
—
0
7
7
62
1.15
0.18
6.0
2.3
2.49
2.45
mmol/l
—
7
55
6
54
1.13
0.09
1.2
1.1
—
—
—
0
0
15
140
1.10
0.05
1.5
1.5
—
—
—
0
0
14
141
0.99
0.00
2.2
1.8
—
—
—
0
0
16
163
0.97
0.00
2.3
2.9
—
—
—
0
0
0
6
0.00
0.00
0.0
2.0
—
5.07
—
0
6
0
6
0.00
0.00
0.0
1.3
—
1.58
—
0
6
0
6
0.00
0.00
0.0
1.2
—
236.67
—
0
6
0
7
0.00
-0.00
0.0
2.3
—
7.94
—
0
7
0
5
0.00
-0.00
0.0
12.2
—
94.24
—
0
5
0
5
0.00
-0.00
0.0
1.6
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.3
—
18.86
—
0
7
0
7
0.00
-0.00
0.0
1.6
—
7.21
—
0
7
0
5
0.00
-0.00
0.0
1.0
—
169.80
—
0
5
0
7
0.00
-0.00
0.0
1.7
—
—
—
0
0
0
5
0.00
-0.00
0.0
3.4
—
3.77
—
0
5
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
5
55
0.90
-0.00
1.2
1.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
2.17
—
0
5

Mortality – FinRegistry

Association

Association between endpoint ARTHROPATHY_HYPERSENS and mortality.

Females

No data

Males

No data

Mortality risk

Mortality risk for people of age

years, who have ARTHROPATHY_HYPERSENS.

N-year risk Females Males
1 No data No data
5 No data No data
10 No data No data
15 No data No data
20 No data No data

Relationships between endpoints

Index endpoint: ARTHROPATHY_HYPERSENS – Arthropathy in hypersensitivity reactions classified elsewhere

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
rg [CI]
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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