No definition available.
Typhoid and paratyphoid fevers, including avohilmo
AB1_TYPHOIDPARATHYPHOID_WIDE
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
557745 |
1. Apply sex-specific ruleNone |
557745 |
2. Check conditionsNone |
557745 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
3 out of 7 registries used, show all original rules. |
264 |
4. Check minimum number of eventsNone |
264 |
5. Include endpointsNone |
264 |
6. Filter based on genotype QC (FinnGen only) |
231 |
Control definitions (FinnGen only)
- Control exclude
- AB1_INTESTINAL_INFECTIONS
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF13
Similar endpoints
↥List of similar endpoints to
Typhoid and paratyphoid fevers, including avohilmo
based on the number of shared cases.
Similar with more cases:
- Intestinal infectious diseases, including avohilmo, including avohilmo
- Certain infectious and parasitic diseases, including avohilmo
- Any prescribed medicine buy
- Any event in hilmo or specialist outpatient
Similar with less cases:
Case counts by codes
↥
Summary Statistics
↥-FinRegistry-
This endpoint is excluded (different definition than used in FinnGen).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 231 | 148 | 83 |
| Unadjusted period prevalence (%) | 0.05 | 0.05 | 0.04 |
| Median age at first event (years) | 44.74 | 42.79 | 48.22 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
No data
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 246
- Matched controls
- 2460
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
A01
ICD-10 Finland
Typhoid and paratyphoid fevers
+∞
59.9
55
*
A01.0
ICD-10 Finland
Typhoid fever
+∞
38.6
36
*
00210
ICD-8 Finland
Paratyphoid fever B
+∞
29.8
28
*
A09
ICD-10 Finland
Other gastroenteritis and colitis of infectious and unspecified origin
4.4
18.9
55
150
A01.4
ICD-10 Finland
Paratyphoid fever, unspecified
+∞
17.9
17
*
SPAT1336
SPAT
Request for examination
5.9
13.4
25
46
00299
ICD-8 Finland
Paratyphoid fever unspecified
+∞
12.6
12
*
I39.8*A01.0
ICD-10 Finland
Endocarditis in typhoid fever
+∞
11.5
11
*
M01.3*A01.4
ICD-10 Finland
Arthritis in typhoid or paratyphoid fever
+∞
11.5
11
*
A60
ICPC
General and Unspecified, Result test/procedure
4.9
10.8
25
56
R05
ICPC
Cough
2.5
9.7
83
418
A98
ICD-10 Finland
Other viral haemorrhagic fevers, not elsewhere classified
15.9
9.6
15
10
L28
ICPC
Limited function/disability (L)
2.6
9.5
67
307
00199
ICD-8 Finland
Typhoid fever, Unspecified
+∞
9.4
9
*
EB1AA, ,
SPAT
3.8
9.3
30
87
Z2221
NOMESCO Finland
Medical doctor
2.4
8.8
86
456
WX700
NOMESCO Finland
Respiratory and circulatory monitoring
2.8
8.7
49
200
R4110
NOMESCO Finland
Physiotherapy
2.3
8.6
84
446
A01.1
ICD-10 Finland
Paratyphoid fever A
+∞
8.4
8
*
R50.9
ICD-10 Finland
Fever, unspecified
2.7
7.9
49
210
N02AX02
ATC
tramadol; systemic, rectal
2.1
7.7
119
752
SPAT1342
SPAT
Referral to specialised care
13.9
7.5
12
9
0029X
ICD-9 Finland
Typhoid and paratyphoid fevers, Paratyphoid fever, unspecified
+∞
7.3
7
*
00220
ICD-8 Finland
Paratyphoid fever C
+∞
7.3
7
*
0022A
ICD-9 Finland
Typhoid and paratyphoid fevers, Paratyphoid fever B
+∞
7.3
7
*
0020A
ICD-9 Finland
Typhoid and paratyphoid fevers, Typhoid fever
+∞
7.3
7
*
M54.8
ICD-10 Finland
Other dorsalgia
4.0
7.2
21
56
J01MA02
ATC
ciprofloxacin; systemic
2.1
7.0
104
642
A01
ICPC
Pain general/multiple sites
2.7
6.9
39
159
Z3231
NOMESCO Finland
Registered nurse
2.2
6.8
77
429
T45
ICPC
Metabolic, Observ/health educat/advice/diet
14.8
6.5
10
7
N03AX16
ATC
[U] pregabalin
2.2
6.4
67
361
L02
ICPC
Back symptom/complaint
2.6
6.4
39
165
A02.1
ICD-10 Finland
Salmonella sepsis
+∞
6.3
6
*
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
74
332
2.76
11.14
3.6
2.9
4.01
3.38
e6/l
0.08
19
153
76
354
2.66
10.56
3.5
2.7
0.85
1.12
e6/l
0.34
22
178
35
122
3.18
8.14
1.7
1.5
—
—
—
0
0
21
56
4.01
7.25
1.1
1.2
—
—
—
0
0
72
404
2.11
6.15
4.4
3.6
1313.37
254.82
ng/l
0.41
52
315
136
958
1.94
6.04
6.8
5.4
1.20
1.21
mmol/l
1.49
128
890
147
1063
1.95
6.04
8.2
6.0
1.20
1.21
mmol/l
0.94
139
912
21
64
3.49
6.01
2.0
1.5
—
—
—
0
0
162
1217
1.97
5.87
11.7
9.8
3.83
4.01
e9/l
0.45
133
1073
136
976
1.88
5.54
2.8
2.5
78.73
77.33
nmol/l
0.20
128
885
53
279
2.15
5.27
8.8
5.9
104.43
104.05
mmol/l
0.23
53
279
15
40
3.93
5.17
1.3
1.2
—
—
—
0
0
15
32
4.92
5.08
1.1
1.4
—
—
—
0
0
15
32
4.92
5.08
1.1
1.4
—
—
—
0
0
150
1150
1.78
4.56
6.2
6.0
10.55
11.38
umol/l
0.82
143
1092
126
924
1.75
4.43
2.3
2.1
94.41
96.84
pmol/l
0.23
71
500
15
45
3.48
4.40
2.0
3.2
8.83
1.46
index
—
6
28
45
245
2.02
4.05
2.0
1.7
—
—
—
0
0
24
101
2.53
3.96
1.9
1.3
—
—
—
0
0
134
1021
1.69
3.93
3.3
3.1
130.53
108.07
ug/l
0.24
126
960
76
496
1.77
3.93
1.3
1.3
0.58
1.43
u/ml
1.67
14
140
156
1239
1.71
3.91
7.0
4.3
6.37
6.54
mmol/l
0.52
148
1159
191
1614
1.82
3.75
9.3
7.6
78.32
79.00
u/l
0.09
185
1532
41
222
2.02
3.74
10.4
6.8
5.13
5.17
kpa
0.11
41
215
41
222
2.02
3.74
10.4
6.8
11.58
12.43
kpa
0.71
41
215
88
606
1.70
3.73
4.2
2.9
0.14
0.44
e6/l
2.49
55
440
16
56
2.99
3.70
1.3
1.3
—
—
—
0
0
44
248
1.94
3.59
2.0
1.6
—
—
—
0
0
90
644
1.63
3.21
1.6
1.6
20.06
21.16
nmol/l
0.35
85
544
20
87
2.41
3.10
3.6
3.4
1.72
1.51
%
0.53
20
81
185
1582
1.68
3.10
5.8
4.2
13.87
11.02
mm/h
1.78
180
1476
54
341
1.75
3.06
2.0
1.8
—
—
—
0
0
25
121
2.19
3.05
3.8
3.1
24.57
24.56
mmol/l
0.01
25
121
25
122
2.17
2.99
1.6
1.7
—
—
—
0
0
7
13
5.51
2.89
1.7
1.5
—
—
—
0
0
24
120
2.11
2.71
1.7
2.2
—
—
—
0
0
60
407
1.63
2.59
1.5
1.3
8.87
11.00
u/ml
0.12
19
157
70
495
1.58
2.55
2.0
1.7
0.98
1.21
mg/l
0.41
57
402
71
504
1.57
2.54
2.5
2.3
—
—
—
0
0
26
141
1.94
2.38
1.9
2.2
—
—
—
0
0
64
450
1.57
2.37
1.6
1.3
36.69
26.09
iu/ml
0.16
12
135
196
1743
1.61
2.36
29.2
19.1
331.79
331.98
g/l
0.10
196
1737
20
101
2.07
2.22
1.0
1.1
—
—
—
0
0
122
992
1.46
2.22
3.8
2.6
—
—
estimate
—
0
0
8
25
3.27
2.11
7.4
4.2
—
—
—
0
0
139
1168
1.44
2.07
4.7
3.7
0.00
0.00
estimate
-0.00
24
262
11
44
2.57
2.04
1.2
1.3
—
—
—
0
0
136
1159
1.39
1.76
4.8
3.7
0.00
0.00
estimate
-0.00
23
257
51
365
1.50
1.73
3.9
2.7
0.81
0.82
mmol/l
0.46
45
350
70
534
1.43
1.72
2.6
2.1
2.58
2.96
mg/l
0.58
65
464
138
1182
1.38
1.72
4.7
3.8
0.17
0.02
estimate
0.43
23
252
9
37
2.49
1.49
1.7
1.6
—
—
—
0
0
6
23
2.65
1.37
1.3
1.2
—
—
—
0
0
215
2018
1.52
1.37
18.9
14.6
85.00
81.78
ml/min/173m2
1.44
196
1868
5
17
2.98
1.36
1.6
1.1
—
—
—
0
0
13
68
1.96
1.36
1.2
1.3
11.49
10.08
g/l
0.68
13
60
11
54
2.09
1.35
1.4
1.1
—
—
—
0
0
11
54
2.09
1.35
1.4
1.1
—
—
—
0
0
17
98
1.79
1.35
1.6
1.4
—
—
—
0
0
12
62
1.98
1.30
1.4
1.2
—
57.98
—
0
8
29
197
1.54
1.26
3.0
2.4
0.20
0.22
g/l
1.21
24
184
18
108
1.72
1.26
1.4
1.3
22.62
26.23
iu/l
0.20
13
86
189
1742
1.37
1.26
30.0
18.6
13.69
13.58
%
0.48
189
1727
8
36
2.26
1.25
2.0
1.3
—
—
—
0
0
11
56
2.01
1.24
1.7
1.6
76.14
56.76
ug/l
0.87
11
44
10
50
2.04
1.18
1.6
1.5
—
—
—
0
0
13
76
1.75
1.01
1.2
1.4
7.65
7.32
g/l
0.28
13
69
13
76
1.75
1.01
1.2
1.4
4.28
4.37
g/l
0.09
13
69
13
76
1.75
1.01
1.2
1.4
4.22
3.54
g/l
0.73
13
69
33
246
1.39
0.93
2.0
2.1
—
—
—
0
0
62
510
1.29
0.92
3.6
3.9
1.02
1.02
kg/l
0.98
42
340
54
657
0.77
0.91
4.2
3.9
0.00
0.01
estimate
0.74
24
239
8
42
1.93
0.89
1.1
1.2
—
—
—
0
0
35
266
1.37
0.89
2.0
2.2
—
—
—
0
0
17
113
1.54
0.84
1.5
1.7
0.32
0.27
mg/l
—
5
46
17
246
0.67
0.83
3.9
4.7
38.75
32.03
%
1.24
12
159
15
221
0.66
0.80
8.3
7.0
—
—
—
0
0
8
48
1.69
0.79
1.6
1.5
—
—
—
0
0
52
430
1.27
0.75
1.8
1.6
—
—
—
0
0
210
2011
1.30
0.73
5.3
5.0
6.00
5.88
mmol/l
0.56
203
1862
5
25
2.02
0.73
1.0
1.5
—
—
—
0
0
5
25
2.02
0.73
1.0
1.5
—
—
—
0
0
5
25
2.02
0.73
1.0
1.5
—
—
—
0
0
7
42
1.69
0.69
1.7
1.5
—
—
—
0
0
11
70
1.60
0.66
1.3
1.4
3.31
3.06
g/l
0.19
11
63
7
44
1.61
0.65
1.7
1.3
1.06
0.95
nmol/l
—
7
37
11
165
0.65
0.65
2.1
2.9
58.00
66.22
ml/min/173m2
—
5
67
5
30
1.68
0.62
1.0
1.5
—
—
—
0
0
8
51
1.59
0.61
1.3
1.3
—
1.04
—
0
5
0
20
0.00
0.60
0.0
1.8
—
13.40
—
0
20
215
2077
1.28
0.59
23.3
14.6
26.78
22.93
mg/l
0.85
188
1696
203
1949
1.24
0.59
6.3
6.0
38.46
38.93
mmol/mol
0.38
198
1844
71
626
1.19
0.56
2.4
3.2
524.71
1298.50
ng/l
4.32
65
536
18
237
0.74
0.55
2.2
2.1
3.11
3.38
ratio
0.57
13
199
21
161
1.33
0.54
2.0
1.4
—
—
—
0
0
9
62
1.47
0.53
1.3
1.4
—
—
—
0
0
12
84
1.45
0.50
2.2
1.4
565.17
318.00
mu/l
0.52
12
77
73
652
1.17
0.50
3.5
3.8
7.85
8.88
mg/mmol
0.07
40
411
16
119
1.37
0.49
7.8
5.6
25.09
24.78
mmol/l
0.11
16
114
11
76
1.47
0.49
3.5
1.9
—
—
—
0
0
16
207
0.76
0.45
2.9
3.3
—
—
—
0
0
39
452
0.84
0.43
1.5
1.8
437.94
13021282.37
pmol/l
0.50
33
384
0
15
0.00
0.41
0.0
1.0
—
—
—
0
0
0
16
0.00
0.41
0.0
1.1
—
—
—
0
0
0
19
0.00
0.39
0.0
1.1
—
48.61
—
0
10
0
19
0.00
0.39
0.0
1.0
—
505.90
—
0
10
22
179
1.25
0.39
3.5
2.5
0.24
0.22
e6/l
0.03
22
166
9
66
1.38
0.39
2.9
2.7
—
—
—
0
0
5
36
1.40
0.38
1.8
2.1
—
—
—
0
0
140
1329
1.12
0.37
4.0
3.2
—
—
—
0
0
94
876
1.12
0.34
2.1
1.9
1.38
1.37
mmol/l
0.08
87
737
5
75
0.66
0.26
1.4
1.4
—
—
—
0
0
229
2258
1.21
0.26
32.7
22.7
252.43
250.31
e9/l
0.20
224
2223
70
653
1.10
0.25
3.2
2.4
52.44
72.97
u/l
1.24
63
594
229
2259
1.20
0.24
32.6
22.6
4.43
4.49
e12/l
0.92
224
2219
79
742
1.10
0.24
3.6
3.2
2.36
2.35
mmol/l
0.24
74
685
16
134
1.21
0.23
3.6
2.9
83.06
62.85
u/ml
0.17
16
128
93
884
1.08
0.22
4.5
3.7
0.00
0.03
estimate
1.15
14
221
5
42
1.19
0.21
2.0
1.5
—
—
—
0
0
0
11
0.00
0.21
0.0
1.0
—
—
—
0
0
0
11
0.00
0.21
0.0
4.5
—
221.27
—
0
11
0
10
0.00
0.21
0.0
1.0
—
1733.90
—
0
10
0
12
0.00
0.21
0.0
2.7
—
—
—
0
0
0
13
0.00
0.21
0.0
2.1
—
126.74
—
0
13
70
659
1.09
0.20
4.4
3.2
0.00
0.01
estimate
0.74
16
201
0
14
0.00
0.20
0.0
4.6
—
956.50
—
0
14
6
53
1.14
0.19
1.3
2.2
178.00
251.76
pmol/l
—
6
46
7
58
1.21
0.18
1.7
1.5
—
—
—
0
0
40
369
1.10
0.18
1.5
1.5
—
—
—
0
0
7
61
1.15
0.17
1.0
1.2
—
—
—
0
0
7
61
1.15
0.17
1.7
1.4
—
—
—
0
0
84
802
1.07
0.17
3.7
3.5
27.69
36.22
ng/l
0.43
58
552
6
77
0.77
0.16
1.0
1.1
1.59
1.60
g/l
—
6
77
6
78
0.76
0.16
1.0
1.2
0.94
0.90
g/l
—
6
78
15
171
0.87
0.15
1.8
1.9
3.28
3.51
mmol/l
—
10
129
211
2083
1.09
0.15
6.0
5.7
2.75
2.74
mmol/l
0.06
201
1945
10
85
1.18
0.12
5.7
3.0
2931.90
2221.75
u/ml
—
10
79
193
1954
0.94
0.11
4.2
4.2
1.45
1.27
mmol/l
2.12
183
1807
5
60
0.83
0.08
1.0
1.3
—
—
—
0
0
148
1458
1.04
0.08
3.7
3.2
52.78
44.16
u/l
0.63
140
1372
6
72
0.83
0.07
1.2
1.3
—
—
—
0
0
8
74
1.08
0.07
1.6
1.8
—
—
—
0
0
8
77
1.04
0.07
1.7
2.0
—
—
—
0
0
207
2057
1.04
0.04
5.1
5.0
4.74
4.67
mmol/l
0.41
199
1925
203
2043
0.96
0.04
5.0
4.9
1.49
1.49
mmol/l
0.05
194
1900
33
338
0.97
0.02
2.9
3.1
0.86
0.84
ug/l
0.03
23
202
42
427
0.98
0.01
4.1
4.7
22.23
22.13
%
0.01
16
203
34
335
1.02
0.00
1.4
1.8
857.89
1209.76
nmol/l
1.86
28
252
5
58
0.86
0.00
1.6
2.3
37.80
24.84
mg/l
—
5
49
5
58
0.86
0.00
1.0
1.9
—
—
—
0
0
5
58
0.86
0.00
1.6
2.3
45.56
162.80
mg/l
—
5
49
5
55
0.91
-0.00
2.6
1.3
—
—
—
0
0
0
5
0.00
-0.00
0.0
2.8
—
83.80
—
0
5
0
9
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.1
—
—
—
0
0
0
7
0.00
-0.00
0.0
2.6
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
52.40
—
0
5
0
7
0.00
-0.00
0.0
1.1
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.0
—
9.92
—
0
6
0
7
0.00
-0.00
0.0
1.3
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.3
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.0
—
42.60
—
0
6
0
6
0.00
-0.00
0.0
1.3
—
—
—
0
0
Mortality – FinRegistry
↥This endpoint is excluded (different definition than used in FinnGen).
Relationships between endpoints
↥Index endpoint: AB1_TYPHOIDPARATHYPHOID_WIDE – Typhoid and paratyphoid fevers, including avohilmo
GWS hits: -
This endpoint is excluded (different definition than used in FinnGen).