No definition available.
Tick-borne viral encephalitis, including avohilmo
AB1_TICK_BORNE_ENCEPHALITIS_WIDE
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
519870 |
1. Apply sex-specific ruleNone |
519870 |
2. Check conditionsNone |
519870 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
3 out of 7 registries used, show all original rules. |
218 |
4. Check minimum number of eventsNone |
218 |
5. Include endpointsNone |
218 |
6. Filter based on genotype QC (FinnGen only) |
200 |
Control definitions (FinnGen only)
- Control exclude
- AB1_VIRAL_CNS
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF13
Similar endpoints
↥List of similar endpoints to
Tick-borne viral encephalitis, including avohilmo
based on the number of shared cases.
Similar with more cases:
- Viral infections of the central nervous system, including avohilmo
- Certain infectious and parasitic diseases, including avohilmo
- Any event in hilmo or specialist outpatient
Similar with less cases:
None
Case counts by codes
↥Summary Statistics
↥-FinRegistry-
This endpoint is excluded (different definition than used in FinnGen).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 200 | 112 | 88 |
| Unadjusted period prevalence (%) | 0.04 | 0.04 | 0.04 |
| Median age at first event (years) | 57.18 | 55.94 | 58.76 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 218
- Matched controls
- 2180
TimeCodeWAS
↥TODO / Current known limitations:
- Only showing the top 500 codes, because showing all (sometimes 20k) makes the page too slow.
- Legend / how to read the glyphs.
- Proper column names.
- Show details (e.g. Fisher or Chi-square test, N cases and N controls) when clicking on a row.
- Explanation on the underlying data / how the TimeCodeWAS is done (e.g. matched cases / controls, eligibility).
- Download CSV not working.
- No filters and sorters.
- Limited amount of endpoints with TimeCodeWAS data.
- Cross-links to Risteys lab test pages for lab test codes.
A86 (45542542)
22308-1 (3012447)
26465-5 (3016543)
26454-9 (3027475)
2520-5 (3035999)
40988-8 (3044254)
50373000 (4177340)
60621009 (4245997)
70058-3 (42868544)
A84.8 (45532856)
AA1CG (2001300116)
18243-6 (3002823)
22133-3 (3014973)
606-4 (3016914)
14744-7 (3020044)
41602-4 (3033386)
42991-0 (3037677)
40729-6 (3041145)
41150-4 (3044212)
49178-7 (3048929)
69924-9 (42868415)
69926-4 (42868417)
69927-2 (42868418)
74917-6 (44816808)
A84.1 (45532855)
A84.9 (45571447)
A87.9 (45600441)
AA1BG (2001300112)
AA1DG (2001300120)
XA800 (2001300412)
TAB00 (2001300538)
R4120 (2001310234)
A03 (2002000144)
5013-8 (3008733)
22126-7 (3010380)
22118-4 (3011166)
29584-0 (3016018)
29591-5 (3016881)
21598-8 (3016894)
2880-3 (3019473)
10333-3 (3023410)
7993-9 (3025023)
44506-4 (3043525)
34563-7 (3044290)
44 (38004484)
58755-0 (40761849)
69923-1 (42868414)
69930-6 (42868421)
A84 (45571446)
R50.9 (45582716)
GD1AA (2001303617)
R4110 (2001310233)
A91 (2002000224)
J01CA04 (21602823)
ERIP (262)
30391-7 (3002582)
7818-8 (3008230)
5794-3 (3011397)
14749-6 (3013826)
2756-5 (3015736)
7817-0 (3016888)
30405-5 (3018095)
6598-7 (3019800)
21592-1 (3023365)
600-7 (3023368)
50554-5 (3029287)
51486-9 (3029879)
51485-1 (3030306)
51483-6 (3030467)
5894-1 (3033658)
40982-1 (3038288)
40987-0 (3043924)
34487-9 (3044938)
87829-8 (36304419)
11 (38004456)
13 (38004458)
93 (38004510)
A69.2 (45595594)
IP (9201)
ER (9203)
2951-2 (3019550)
2823-3 (3023103)
14682-9 (3020564)
28539-5 (3035941)
20570-8 (3009542)
26464-8 (3010813)
26453-1 (3026361)
26515-7 (3007461)
718-7 (3000963)
30428-7 (3024731)
1742-6 (3006923)
OMOP4822461 (32036)
69738-3 (42870588)
2157-6 (3007220)
20454-5 (3014051)
30383-4 (3000850)
26444-0 (3006315)
30180-4 (3022096)
51480-2 (3031040)
26485-3 (3019069)
26450-7 (3006504)
26484-6 (3001604)
26474-7 (3019198)
26478-8 (3002030)
26511-6 (3018010)
26449-9 (3013115)
1988-5 (3020460)
A03FA01 (21600484)
1995-0 (3021347)
2514-8 (3035350)
5802-4 (3021601)
751-8 (3013650)
62238-1 (40764999)
25428-4 (3009261)
OMOP5117446 (33004)
251B00000X (38004193)
24357-6 (3037467)
14631-6 (3006140)
21 (8717)
28540-3 (3003338)
4537-7 (3013707)
715-3 (3021589)
6768-6 (3035995)
94500-6 (706163)
OP (9202)
30385-9 (3002385)
60026-2 (40763086)
630-4 (3026008)
58410-2 (40761511)
34714-6 (3032080)
3016-3 (3009201)
J06.9 (45562437)
R02AX02 (1588667)
M01AE01 (21603967)
LabWAS
↥Mortality – FinRegistry
↥This endpoint is excluded (different definition than used in FinnGen).
Relationships between endpoints
↥Index endpoint: AB1_TICK_BORNE_ENCEPHALITIS_WIDE – Tick-borne viral encephalitis, including avohilmo
GWS hits: -
This endpoint is excluded (different definition than used in FinnGen).