No definition available.
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
519870 |
1. Apply sex-specific ruleNone |
519870 |
2. Check conditionsNone |
519870 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
2 out of 7 registries used, show all original rules. |
375 |
4. Check minimum number of eventsNone |
375 |
5. Include endpointsNone |
375 |
6. Filter based on genotype QC (FinnGen only) |
312 |
Control definitions (FinnGen only)
- Control exclude
- AB1_HIV
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF5
Similar endpoints
↥List of similar endpoints to
Unspecified human immunodeficiency virus [HIV] disease
based on the number of shared cases.
Similar with more cases:
- Unspecified human immunodeficiency virus [HIV] disease, including avohilmo
- Human immunodeficiency virus [HIV] disease
- Human immunodeficiency virus [HIV] disease, including avohilmo
- Certain infectious and parasitic diseases
- Certain infectious and parasitic diseases, including avohilmo
Similar with less cases:
None
Case counts by codes
↥Summary Statistics
↥-FinRegistry-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | |||
| Whole population | 2230 | 539 | 1557 |
| Only index persons | 1747 | 492 | 1255 |
| Unadjusted period prevalence (%) | |||
| Whole population | 0.04 | 0.02 | 0.04 |
| Only index persons | 0.04 | 0.02 | 0.05 |
| Median age at first event (years) | |||
| Whole population | 39.14 | 34.60 | 41.16 |
| Only index persons | 39.53 | 34.14 | 41.64 |
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 312 | 51 | 261 |
| Unadjusted period prevalence (%) | 0.10 | 0.02 | 0.12 |
| Median age at first event (years) | 42.21 | 40.78 | 42.49 |
-FinRegistry-
Age distribution of first events
-FinnGen-
Age distribution of first events
-FinRegistry-
Year distribution of first events
-FinnGen-
Year distribution of first events
-FinRegistry-
Cumulative Incidence Function
-FinnGen-
Cumulative Incidence Function
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 375
- Matched controls
- 3750
TimeCodeWAS
↥TODO / Current known limitations:
- Only showing the top 500 codes, because showing all (sometimes 20k) makes the page too slow.
- Legend / how to read the glyphs.
- Proper column names.
- Show details (e.g. Fisher or Chi-square test, N cases and N controls) when clicking on a row.
- Explanation on the underlying data / how the TimeCodeWAS is done (e.g. matched cases / controls, eligibility).
- Download CSV not working.
- No filters and sorters.
- Limited amount of endpoints with TimeCodeWAS data.
- Cross-links to Risteys lab test pages for lab test codes.
B23.1 (45532868)
B23.8 (45561749)
Z21 (45566407)
10351-5 (3013180)
B24 (45547443)
80223-1 (21494815)
8123-2 (3014037)
24467-3 (3028167)
54218-3 (40757349)
14135-8 (3001405)
8116-6 (3010503)
8122-4 (3011412)
8039-0 (3014959)
26009-1 (3019539)
9728-7 (3025271)
8040-8 (3027529)
90304-7 (1175426)
R4110 (2001310233)
WW200 (2001310599)
SMOKING-2-2-0 (2002330110)
SMOKING-1-1-0 (2002330116)
80222-3 (21494814)
3141-9 (3013762)
8117-4 (3016228)
16128-1 (3017143)
16933-4 (3021879)
8112-5 (3027831)
50690-7 (3029634)
50373000 (4177340)
60621009 (4245997)
B18.2 (45590846)
JN3AE (2001305555)
Z3226 (2001311560)
26484-6 (3001604)
26478-8 (3002030)
14879-1 (3003458)
14631-6 (3006140)
26444-0 (3006315)
26450-7 (3006504)
1742-6 (3006923)
26449-9 (3013115)
4537-7 (3013707)
14749-6 (3013826)
1805-1 (3016417)
26511-6 (3018010)
26485-3 (3019069)
26474-7 (3019198)
22587-0 (3019832)
14647-2 (3019900)
30180-4 (3022096)
14646-4 (3023602)
6768-6 (3035995)
24357-6 (3037467)
47210-0 (3048773)
207NI0002X (38003841)
16 (38004461)
44 (38004484)
69738-3 (42870588)
A56.3 (45542533)
A54.6 (45581125)
J18.9 (45601123)
OP (9202)
1920-8 (3013721)
WYA30 (2001310874)
GD1AA (2001303617)
55429-5 (40758558)
751-8 (3013650)
715-3 (3021589)
26 (38004469)
171128005 (4064905)
1751-7 (3024561)
OMOP5117446 (33004)
Z2221 (2001311556)
ER (9203)
11 (38004456)
21613-5 (3006093)
2888-6 (3037121)
N05BA01 (21604566)
A63.0 (45585929)
N05BA04 (21604569)
22 (8756)
21 (8717)
N05CD07 (21604642)
XLD00 (2001306651)
6357-8 (3024950)
14771-0 (3018251)
C5 (903277)
2756-5 (3015736)
30405-5 (3018095)
1988-5 (3020460)
N05CF01 (21604654)
24111-7 (3011371)
10 (38004455)
LC2BE (2001306544)
OMOP4822458 (581477)
30385-9 (3002385)
4548-4 (3004410)
5802-4 (3021601)
2514-8 (3035350)
25428-4 (3009261)
62238-1 (40764999)
14682-9 (3020564)
J02AC01 (21603080)
26515-7 (3007461)
28539-5 (3035941)
20570-8 (3009542)
21416-3 (3003510)
30428-7 (3024731)
26453-1 (3026361)
718-7 (3000963)
26464-8 (3010813)
28540-3 (3003338)
N06AX11 (21604740)
Z25.1 (45581017)
LDA20 (2001306656)
2951-2 (3019550)
JN1AE (2001305517)
ULA02 (2001306679)
251B00000X (38004193)
2823-3 (3023103)
75622-1 (46235355)
J01DB01 (21602870)
OMOP4822462 (581458)
58410-2 (40761511)
ZXE10 (2001311401)
OMOP4822461 (32036)
ZXD10 (2001311387)
R06AE07 (21603497)
LabWAS
↥Mortality – FinRegistry
↥Association
Association between endpoint AB1_HIV_NOS and mortality.
Females
No dataMales
| Parameter | HR [95% CI] | p-value |
|---|---|---|
| AB1_HIV_NOS | 3.161 [2.63, 3.81] | < 0.001 |
| Birth year | 0.985 [0.98, 0.99] | 0.002 |
During the follow-up period (1.1.1998 — 31.12.2019), 201 out of 1214 males with AB1_HIV_NOS died.
Mortality risk
Mortality risk for people of age
years, who have AB1_HIV_NOS.| N-year risk | Females | Males |
|---|---|---|
| 1 | No data | 0.477% |
| 5 | No data | 3.193% |
| 10 | No data | 8.646% |
| 15 | No data | 14.951% |
| 20 | No data | 24.987% |
Relationships between endpoints
↥Index endpoint: AB1_HIV_NOS – Unspecified human immunodeficiency virus [HIV] disease
GWS hits: -