Upper arm

Z21_UPPER_ARM

No definition available.

Endpoint definition

↥

Report an error or suggest an improvement for this endpoint codes

Endpoint definition steps	FinnGen
Phenotype data	557745
1. Apply sex-specific rule None	557745
2. Check conditions None	557745
3. Check pre-conditions, main-only, mode, registry filters Registry filters: Hospital discharge: ICD-10 — ZA2.0 Cause of death: ICD-10 — ZA2.0 2 out of 7 registries used, show all original rules.	98
4. Check minimum number of events None	98
5. Include endpoints None	98
6. Filter based on genotype QC (FinnGen only)	85

Control definitions (FinnGen only)

Control exclude: Z21_ADDIT_CODES_LOCAT_DEFECT_INJURY_ILLNE

Extra metadata

Level in the ICD hierarchy: 3
First used in FinnGen datafreeze: DF4
Parent code in ICD-10: Z[AB]

NAME	Z21_UPPER_ARM
CONTROL_EXCLUDE	Z21_ADDIT_CODES_LOCAT_DEFECT_INJURY_ILLNE
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	ZA20
HD_ICD_9
HD_ICD_8
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	ZA20
COD_ICD_9
COD_ICD_8
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

Similar endpoints

↥

List of similar endpoints to Upper arm based on the number of shared cases.

Similar with more cases:

Similar with less cases:

None

Case counts by codes

↥

FinnGen case counts by registry codes:

Upset plot

Full data table

Summary Statistics

↥

-FinRegistry-

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

-FinnGen-

Key figures

	All	Female	Male
Number of individuals	85	43	42
Unadjusted period prevalence (%)	0.02	0.02	0.02
Median age at first event (years)	55.73	51.98	59.57

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS

↥

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log₁₀(p-value) ≥ 6.

Matched cohort

Matched cases
88: Matched controls
880

Code

Vocabulary

Description

Odds Ratio

-log₁₀(p)

N matched cases

N matched controls

ZA2.0

ICD-10 Finland

Upper arm

+∞

124.8

NC1AA

NOMESCO Finland

Elbow X-ray examination without contrast

15.8

13.0

W01

ICD-10 Finland

Fall on same level from slipping, tripping and stumbling

3.3

6.8

172

LabWAS

↥

N Cases

N Controls

-log₁₀(p)

cases

controls

cases

controls

unit

-log₁₀(p)

N cases

N controls

(3021337) Troponin I.cardiac [Mass/volume] in Serum or Plasma

135

3.31

6.44

4.3

3.2

74.55

428.41

ng/l

0.85

(46235759) Influenza virus B RNA [Presence] in Nasopharynx by NAA with probe detection

6.43

4.96

1.8

2.5

—

(3044254) Respiratory syncytial virus RNA [Presence] in Specimen by NAA with probe detection

5.55

4.16

1.9

2.2

—

(3005785) Creatine kinase.MB [Mass/volume] in Serum or Plasma

2.97

3.15

2.7

2.3

1.76

5.83

ug/l

3.33

(3003327) Ova and parasites identified in Stool by Light microscopy

4.43

2.97

1.2

1.3

—

(3011960) Natriuretic peptide B [Mass/volume] in Serum or Plasma

2.92

2.30

6.5

2.1

217.23

119.42

ng/l

0.51

(3013650) Neutrophils [#/volume] in Blood by Automated count

472

1.95

2.17

7.0

11.4

4.13

3.95

e9/l

0.21

415

(3008486) Thyroxine (T4) free [Moles/volume] in Serum or Plasma

569

1.98

1.88

4.1

4.3

14.43

14.79

pmol/l

0.52

519

(3020460) C reactive protein [Mass/volume] in Serum or Plasma

753

2.80

1.67

20.0

15.2

23.61

23.25

mg/l

0.03

627

(3005772) Bilirubin.conjugated [Moles/volume] in Serum or Plasma

2.05

1.63

1.8

2.7

5.81

6.09

umol/l

0.07

(46236098) ABO and Rh group [Type] in Blood by Confirmatory method

187

1.73

1.49

2.0

2.5

—

(3046524) Influenza virus A Ag [Presence] in Nasopharynx by Immunoassay

3.25

1.46

1.4

1.1

—

(3043362) Influenza virus B Ag [Presence] in Nasopharynx by Immunoassay

3.25

1.46

1.4

1.1

—

(3007220) Creatine kinase [Enzymatic activity/volume] in Serum or Plasma

226

1.65

1.38

2.5

2.1

116.84

177.87

u/l

0.97

221

(43054903) Holo-transcobalamin II [Moles/volume] in Serum

318

1.61

1.37

2.3

2.1

100.97

97.47

pmol/l

0.24

169

(3002582) Erythrocytes [#/volume] in Urine

263

1.62

1.36

3.6

3.3

31.51

65.55

e6/l

0.63

203

(3013139) Helicobacter pylori Ag [Presence] in Stool

2.34

1.28

1.3

1.2

—

(3004716) Salmonella sp identified in Stool by Organism specific culture

0.00

1.18

0.0

1.2

—

(3044938) Influenza virus A RNA [Presence] in Specimen by NAA with probe detection

121

1.73

1.18

2.1

1.9

—

(3041942) Cyclic citrullinated peptide Ab [Units/volume] in Serum

138

1.69

1.17

1.2

1.3

20.26

6.25

u/ml

—

(3024135) Streptococcus.beta-hemolytic [Presence] in Throat by Organism specific culture

176

1.59

1.07

1.8

1.7

—

(3018095) Leukocytes [#/volume] in Urine

295

1.51

1.05

4.7

3.9

30.54

81.35

e6/l

0.51

208

(3044640) Blood type and Crossmatch panel - Blood

258

1.52

1.04

2.4

2.5

—

(42870588) Differential panel, method unspecified - Blood

269

1.50

1.01

4.7

5.7

—

(3029879) Epithelial cells.squamous [#/volume] in Urine by Automated count

118

1.66

1.01

3.7

3.3

15.40

1.90

e6/l

—

(3006093) Chlamydia trachomatis DNA [Presence] in Specimen by NAA with probe detection

1.89

1.00

2.2

2.0

—

(3049804) Myeloperoxidase IgG Ab [Units/volume] in Serum

0.00

0.99

0.0

1.2

—

(3026008) Bacteria identified in Urine by Culture

215

1.52

0.98

3.0

—

(3031040) Bacteria [#/volume] in Urine by Automated count

487

1.48

0.95

5.0

4.2

—

50.78

—

(3030467) Casts [#/volume] in Urine by Automated count

217

1.50

0.94

3.5

3.2

0.65

0.22

e6/l

0.60

158

(3001079) Blood group antibody screen [Presence] in Serum or Plasma

370

1.44

0.90

2.9

2.7

—

estimate

—

(3020682) Albumin/Creatinine [Ratio] in Urine

256

1.46

0.89

3.3

4.1

9.90

13.05

mg/mmol

0.21

160

(3007853) Bacteria identified in Skin by Aerobe culture

1.66

0.88

2.1

1.6

—

(3012516) Albumin [Mass/volume] in Urine

249

1.45

0.85

3.3

3.4

50.73

75.69

mg/l

0.41

166

(3042936) Bacteria identified in Isolate by Culture

124

1.57

0.83

1.8

2.0

—

(40768797) Stomach Pathology biopsy report

1.62

0.82

1.1

1.3

—

(3002256) Pathology report gross observation

1.62

0.82

1.1

1.3

—

(3030306) Epithelial cells.non-squamous [#/volume] in Urine by Automated count

125

1.55

0.81

3.6

3.2

3.42

1.03

e6/l

—

(3009261) Glucose [Presence] in Urine by Test strip

433

0.71

0.77

5.3

3.8

0.00

estimate

—

(3013707) Erythrocyte sedimentation rate [Velocity] in Red Blood Cells by Westergren method

581

1.45

0.77

5.5

4.1

9.90

10.62

mm/h

0.24

535

(3029937) Albumin [Presence] in Urine by Test strip

245

0.67

0.76

4.4

3.9

0.00

0.01

estimate

—

(1002224) Polysomnography panel

1.86

0.74

1.0

1.1

—

(3013826) Glucose [Moles/volume] in Serum or Plasma

452

1.37

0.69

6.8

4.8

6.79

6.57

mmol/l

0.29

425

(1761868) Lipid panel - Serum or Plasma

315

0.71

0.69

3.2

—

(3011371) Neisseria gonorrhoeae DNA [Presence] in Specimen by NAA with probe detection

1.64

0.67

1.7

1.9

—

(3006315) Basophils [#/volume] in Blood

434

1.35

0.66

4.2

6.1

0.04

e9/l

0.26

371

(3001604) Monocytes [#/volume] in Blood

434

1.35

0.66

4.2

6.1

0.55

0.57

e9/l

0.22

374

(3011288) Drugs identified in Urine by Screen method Nominal

1.77

0.65

1.0

1.6

—

(3021601) Nitrite [Presence] in Urine by Test strip

423

0.75

0.62

5.2

3.8

0.00

estimate

—

(40765161) Human bocavirus DNA [Presence] in Specimen by NAA with probe detection

0.00

0.61

0.0

1.7

—

(3000494) Fungus identified in Specimen by Culture

1.51

0.61

1.4

1.5

—

(3006418) Campylobacter sp identified in Tissue by Organism specific culture

0.00

0.61

0.0

1.2

—

(42529406) Shigella sp [Presence] in Stool by Culture

0.00

0.61

0.0

1.2

—

(3014765) Yersinia sp identified in Stool by Organism specific culture

0.00

0.61

0.0

1.2

—

(3035350) Ketones [Presence] in Urine by Test strip

422

0.75

0.60

5.2

3.8

0.00

estimate

—

(3017044) Thyrotropin receptor Ab [Units/volume] in Serum

0.00

0.60

0.0

2.5

—

4.04

—

(3004248) Sex hormone binding globulin [Moles/volume] in Serum or Plasma

1.77

0.59

1.2

2.0

41.50

38.23

nmol/l

—

(3000991) Gas panel - Venous blood

1.56

0.56

5.9

9.7

—

(3025941) Bacteria identified in Stool by Culture

1.62

0.55

1.2

1.3

—

(40761511) CBC panel - Blood by Automated count

788

0.67

0.54

16.6

13.3

—

(1001926) Buprenorphine [Presence] in Urine by Screen method

1.54

0.52

1.2

1.4

—

(3019800) Troponin T.cardiac [Mass/volume] in Serum or Plasma

313

0.76

0.51

4.6

3.4

41.57

45.83

ng/l

0.08

214

(3000764) Benzodiazepines [Presence] in Urine

1.53

0.49

1.1

1.4

—

(36304419) Bacteria [Presence] in Urine

204

1.31

0.48

3.6

3.1

—

estimate

—

(3027944) Amphetamines [Presence] in Urine

1.46

0.47

1.1

1.4

—

(3027008) Opiates [Presence] in Urine

1.46

0.47

1.1

1.4

—

(3028300) Cannabinoids [Presence] in Urine

1.46

0.47

1.1

1.4

—

(3016293) Bicarbonate [Moles/volume] in Serum or Plasma

1.50

0.44

5.5

8.9

22.54

25.19

mmol/l

—

(40764999) Glomerular filtration rate [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (CKD-EPI)/1.73 sq M

722

1.39

0.41

21.2

15.1

83.35

83.83

ml/min/173m2

0.07

662

(3047007) Chlamydophila sp Ab [Presence] in Serum

0.00

0.41

0.0

1.1

—

(3049207) Fetal Trisomy 21 risk [Likelihood] Based on maternal age

0.00

0.41

0.0

1.4

—

(3008714) Choriogonadotropin [Multiple of the median] adjusted in Serum or Plasma

0.00

0.41

0.0

1.4

—

0.87

—

(40763531) Fetal Nuchal fold [Multiple of the median] Thickness adjusted for maternal weight

0.00

0.41

0.0

1.4

—

1.06

—

(46235831) Pregnancy associated plasma protein A [Multiple of the median] adjusted in Serum or Plasma

0.00

0.41

0.0

1.4

—

0.94

—

(4195642) Thrombophilia screening test

0.00

0.41

0.0

1.1

—

(4268621) Lupus anticoagulant assay

0.00

0.41

0.0

1.9

—

(3044355) Beta 2 glycoprotein 1 IgG Ab [Units/volume] in Serum or Plasma by Immunoassay

0.00

0.41

0.0

1.2

—

1.29

—

(4024509) Urine culture

1.50

0.41

3.6

1.9

—

(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection

504

1.24

0.39

3.2

3.1

—

(3051387) C reactive protein [Mass/volume] in Capillary blood

0.00

0.39

0.0

4.3

—

27.73

—

(3020427) Coagulation factor X inhibitor [Units/volume] in Platelet poor plasma by Coagulation assay

0.00

0.39

0.0

2.2

—

0.43

—

(3009041) Cardiolipin IgG Ab [Units/volume] in Serum by Immunoassay

0.00

0.39

0.0

1.2

—

5.10

—

(3007164) IgA [Mass/volume] in Serum or Plasma

172

1.29

0.39

1.1

1.5

2.84

2.42

g/l

0.29

101

(3034780) Angiotensin converting enzyme [Enzymatic activity/volume] in Serum or Plasma

1.41

0.39

1.8

1.9

36.20

40.82

u/l

—

(3045783) Sodium and Potassium panel [Moles/volume] - Serum or Plasma

0.60

0.37

8.4

7.0

—

(3001019) Free T4 and TSH panel - Serum or Plasma

1.50

0.37

1.2

2.1

—

(40758558) Short blood count panel - Blood

240

1.24

0.36

5.2

6.1

—

(3022145) Colonoscopy Study observation

0.64

0.34

1.5

1.3

—

(40760892) CBC W Ordered Manual Differential panel - Blood

204

1.24

0.33

3.2

5.1

—

(40768804) Tissue Pathology biopsy report

312

1.20

0.31

2.6

2.0

—

(3007628) Bicarbonate [Moles/volume] standard in Venous blood

1.30

0.31

3.1

3.3

24.14

24.21

mmol/l

—

(3019977) pH of Arterial blood

1.32

0.30

6.6

8.9

7.42

—

(40763571) Iron/Transferrin [Ratio] in Serum or Plasma

117

0.74

0.29

4.0

2.9

28.56

22.60

—

109

(3020564) Creatinine [Moles/volume] in Serum or Plasma

807

1.50

0.27

25.0

19.4

76.36

78.18

umol/l

0.32

796

(3000492) Spirometry study

1.32

0.25

1.4

1.6

—

(46235355) HIV 1 and 2 tests - Meaningful Use set

153

1.22

0.25

1.7

2.0

—

(3005013) Prostate Specific Ag Free [Mass/volume] in Serum or Plasma

177

0.82

0.23

3.3

2.9

0.68

0.69

ug/l

—

110

(3030981) Hyaline casts [#/volume] in Urine by Automated count

1.28

0.21

2.7

2.6

0.32

0.18

e6/l

—

(3041354) Potassium [Moles/volume] in Venous blood

0.00

0.21

0.0

3.0

—

4.03

—

(3033705) Calcium.ionized [Moles/volume] in Venous blood

0.00

0.21

0.0

3.0

—

1.19

—

(40760888) Immunoglobulin light chains.free panel - Serum

0.00

0.21

0.0

5.2

—

(3035285) Chloride [Moles/volume] in Venous blood

0.00

0.21

0.0

3.0

—

106.20

—

(3040363) Hepatitis A virus IgG Ab [Presence] in Serum by Immunoassay

0.00

0.21

0.0

1.0

—

(3032699) Streptococcus pneumoniae DNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.3

—

(40759836) Histone Ab [Presence] in Serum by Immunoblot

0.00

0.21

0.0

1.6

—

(40759843) Sjogrens syndrome-A extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.21

0.0

1.6

—

(3025023) Rhinovirus RNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.8

—

(40759842) Ribonucleoprotein extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.21

0.0

1.5

—

(40759850) Jo-1 extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.21

0.0

1.6

—

(3009340) Metanephrine [Moles/volume] in Serum or Plasma

0.00

0.21

0.0

1.2

—

(3018333) Ribosomal P Ab [Presence] in Serum

0.00

0.21

0.0

1.5

—

(40759844) Sjogrens syndrome-B extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.21

0.0

1.6

—

(40759849) Smith extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.21

0.0

1.6

—

(3016879) Cocaine [Presence] in Urine

1.30

0.21

1.2

1.4

—

(3047352) Trisomy 18 risk [Likelihood] in Fetus

0.00

0.21

0.0

1.4

—

(40759812) SCL-70 extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.21

0.0

1.5

—

(3005033) Fetal Nuchal fold Thickness US

0.00

0.21

0.0

1.4

—

1.25

—

(3018559) Microscopic observation [Identifier] in Buccal smear by Cyto stain

0.00

0.21

0.0

1.3

—

(3016881) Enterovirus RNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.8

—

(3042596) Human coronavirus RNA [Presence] in Specimen by NAA with probe detection

0.00

0.20

0.0

1.3

—

(3030692) Respiratory virus DNA+RNA [Identifier] in Specimen by NAA with probe detection

0.00

0.20

0.0

1.3

—

(3043238) Trisomy 21 risk [Likelihood] in Fetus

0.00

0.20

0.0

1.5

—

(3022948) Iron [Moles/volume] in Serum or Plasma

132

0.81

0.20

3.5

2.8

12.78

13.40

umol/l

0.11

120

(3019284) Hepatitis B virus surface Ag [Presence] in Serum

131

0.82

0.18

1.9

1.6

—

(3005719) IgG [Mass/volume] in Serum or Plasma

1.18

0.18

1.7

2.1

10.41

9.51

g/l

—

(3018006) Microscopic observation [Identifier] in Cervix by Cyto stain.thin prep

119

0.82

0.16

2.0

1.5

—

(3019902) Methicillin resistant Staphylococcus aureus [Presence] in Specimen by Organism specific culture

0.76

0.16

4.8

2.8

—

(3033319) Streptococcus pyogenes Ag [Presence] in Throat

103

1.19

0.14

1.9

1.5

—

(3017143) Hepatitis C virus Ab [Presence] in Serum

0.82

0.14

1.9

1.7

—

(3021589) Normoblasts [#/volume] in Blood

377

1.11

0.14

8.8

11.5

0.00

e9/l

0.32

303

(3004789) Transferrin [Mass/volume] in Serum or Plasma

127

0.85

0.13

3.0

2.7

2.03

2.28

g/l

1.02

113

(3037467) Urinalysis macro (dipstick) panel - Urine

519

1.10

0.13

5.5

4.3

—

(3019060) Gas panel - Arterial blood

1.14

0.10

6.2

4.0

—

(3004588) Protein electrophoresis panel - Serum or Plasma

1.04

0.09

1.2

2.2

—

(3000067) Parathyrin.intact [Mass/volume] in Serum or Plasma

0.79

0.08

7.4

4.3

71.20

85.79

ng/l

—

(3036481) Cortisol [Moles/volume] in Serum or Plasma

1.15

0.08

1.3

2.1

290.50

411.07

nmol/l

—

(3012095) Magnesium [Moles/volume] in Serum or Plasma

133

0.89

0.08

3.3

3.0

0.78

0.81

mmol/l

0.44

124

(36660697) Celiac disease serology panel - Serum

0.83

0.08

1.0

1.2

—

(4035726) Immunohistochemistry procedure

1.09

0.08

1.4

1.2

—

(43054914) Glucose tolerance 2 hours panel - Serum or Plasma

1.07

0.07

1.3

1.7

—

(21494755) Public health laboratory ask at order entry panel

1.07

0.07

1.1

1.4

—

(3019832) Treponema pallidum Ab [Presence] in Serum

0.85

0.07

1.6

1.8

—

(3043924) Respiratory syncytial virus RNA [Identifier] in Specimen by NAA with probe detection

100

0.89

0.07

2.3

1.6

—

(3024950) Chlamydia trachomatis DNA [Presence] in Urine by NAA with probe detection

110

0.90

0.05

2.0

—

(3021347) Calcium.ionized [Moles/volume] in Serum or Plasma

328

1.06

0.05

7.6

6.7

1.20

1.21

mmol/l

0.20

308

(3014576) Chloride [Moles/volume] in Serum or Plasma

109

0.91

0.04

6.8

8.8

106.00

104.20

mmol/l

—

109

(3027945) Reticulocytes/Erythrocytes in Blood

1.08

0.02

2.6

3.2

2.15

1.79

—

(3023368) Bacteria identified in Blood by Culture

206

0.96

0.00

5.0

4.7

—

(3003458) Phosphate [Moles/volume] in Serum or Plasma

108

1.02

0.00

6.5

6.9

1.03

1.09

mmol/l

0.48

100

(3037522) Nuclear Ab [Titer] in Serum

122

0.98

0.00

1.6

1.4

240.00

345.71

titre

—

(3015736) pH of Urine

339

1.00

0.00

4.0

3.4

5.93

6.23

0.91

187

(3019050) Tissue transglutaminase IgA Ab [Units/volume] in Serum

196

1.03

0.00

1.2

1.4

1.13

0.95

u/ml

—

(3003694) ABO and Rh group [Type] in Blood

226

1.02

0.00

1.1

1.5

—

(3001784) Prostate Specific Ag Free/Prostate specific Ag.total in Serum or Plasma

234

0.98

0.00

5.0

4.2

20.09

21.60

—

108

(3003510) Neisseria gonorrhoeae DNA [Presence] in Urine by NAA with probe detection

101

0.99

0.00

2.0

1.9

—

(3051552) Clostridioides difficile toxin genes [Presence] in Stool by NAA with probe detection

0.94

0.00

1.6

1.8

—

(3016888) Borrelia burgdorferi IgG Ab [Units/volume] in Serum

0.94

0.00

1.2

—

20.10

—

(3000081) cloZAPine [Moles/volume] in Serum or Plasma

0.00

-0.00

0.0

25.4

—

1509.57

—

(3020876) Protein [Mass/time] in 24 hour Urine

0.00

-0.00

0.0

4.3

—

0.94

—

(3015024) Glucose [Moles/volume] in Serum or Plasma --1 hour post dose glucose

0.00

-0.00

0.0

1.4

—

8.64

—

(3005570) Glucose [Moles/volume] in Urine

0.00

-0.00

0.0

1.5

—

(3019897) Erythrocyte [DistWidth] in Red Blood Cells by Automated count

0.00

-0.00

0.0

1.6

—

13.40

—

(3014051) Protein [Presence] in Urine by Test strip

230

1.00

-0.00

3.3

2.8

—

0.29

—

(3012202) Varicella zoster virus DNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

1.3

—

(3023601) Vancomycin resistant enterococcus [Presence] in Specimen by Organism specific culture

0.00

-0.00

0.0

3.5

—

(40764127) Haemophilus influenzae DNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

1.1

—

(40766800) Mycobacterium tuberculosis stimulated gamma interferon release by CD4+ T-cells [Units/volume] corrected for background in Blood

0.00

-0.00

0.0

1.0

—

(3016724) Homocysteine [Moles/volume] in Serum or Plasma

0.00

-0.00

0.0

2.0

—

16.42

—

(3026048) Bordetella pertussis IgG Ab [Units/volume] in Serum

0.00

-0.00

0.0

1.0

—

20.70

—

(21494890) Protein electrophoresis panel - 24 hour Urine

0.00

-0.00

0.0

6.4

—

(3042631) Mycobacterium sp identified in Specimen

0.00

-0.00

0.0

1.9

—

(3000034) Microalbumin [Mass/volume] in Urine

0.00

-0.00

0.0

4.0

—

48.24

—

(1617658) Protocol used for examination of sentinel lymph nodes

0.00

-0.00

0.0

1.0

—

(3008536) Aspergillus sp Ab [Presence] in Serum

0.00

-0.00

0.0

1.6

—

(3032773) Endomysium IgG Ab [Titer] in Serum

0.00

-0.00

0.0

1.0

—

(44806420) Estimation of glomerular filtration rate

0.00

-0.00

0.0

2.0

—

(3024666) Lithium [Moles/volume] in Serum or Plasma

0.00

-0.00

0.0

5.8

—

0.56

—

(3008757) Leukocyte morphology finding [Identifier] in Blood

0.00

-0.00

0.0

2.9

—

(3013201) Beta-2-Microglobulin [Mass/volume] in Serum or Plasma

0.00

-0.00

0.0

1.8

—

3.93

—

(3021125) Hepatitis C virus RNA [Presence] in Serum or Plasma by NAA with probe detection

0.00

-0.00

0.0

1.4

—

(3008832) Norclozapine [Moles/volume] in Serum or Plasma

0.00

-0.00

0.0

13.1

—

903.14

—

(40768795) Lymph node Pathology biopsy report

0.00

-0.00

0.0

1.1

—

(3011391) Calcitriol [Moles/volume] in Serum or Plasma

0.00

-0.00

0.0

1.3

—

108.11

—

(3027953) Aldolase [Enzymatic activity/volume] in Serum or Plasma

0.00

-0.00

0.0

1.8

—

4.68

—

(36305771) Cryptosporidium sp DNA [Presence] in Stool by NAA with probe detection

0.00

-0.00

0.0

1.0

—

(21494815) CD4 cells/Lymphocytes in Specimen

0.00

-0.00

0.0

1.8

—

41.00

—

(40764126) Parainfluenza virus RNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

1.2

—

(3034603) RHD gene allele [Genotype] in Blood or Tissue by Molecular genetics method Nominal

0.00

-0.00

0.0

1.4

—

(4211845) Urine protein measurement

0.00

-0.00

0.0

1.3

—

(3006462) Nitrate [Presence] in Urine

0.00

-0.00

0.0

1.4

—

(3006257) Acetylcholine receptor Ab [Moles/volume] in Serum

0.00

-0.00

0.0

1.3

—

(3053028) Streptococcus sp identified in Specimen by Organism specific culture

0.00

-0.00

0.0

1.0

—

(3021879) Hepatitis B virus core Ab [Presence] in Serum

0.90

-0.00

1.5

1.6

—

(3051611) Lipemic interference index of Serum or Plasma

0.00

-0.00

0.0

3.2

—

16.50

—

(3043453) Neutrophil cytoplasmic Ab.perinuclear [Titer] in Serum

0.00

-0.00

0.0

1.0

—

(37208534) Antinuclear antibody arbitrary concentration in serum

0.00

-0.00

0.0

1.0

—

(3037875) Bordetella parapertussis DNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

1.2

—

(3051651) Icteric interference index of Serum or Plasma

0.00

-0.00

0.0

2.7

—

0.67

—

(37020937) Giardia lamblia DNA [Presence] in Stool by NAA with probe detection

0.00

-0.00

0.0

1.0

—

(40765089) Chromosome analysis panel - Blood by G-banded

0.00

-0.00

0.0

1.0

—

(44816752) ERBB2 gene copy number/nucleus in Tissue by FISH

0.00

-0.00

0.0

1.1

—

(40771527) Human papilloma virus E6+E7 mRNA [Presence] in Cervix by NAA with probe detection

0.00

-0.00

0.0

1.6

—

(3003265) Liver kidney microsomal Ab [Titer] in Serum by Immunofluorescence

0.00

-0.00

0.0

1.3

—

(40760543) Extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

-0.00

0.0

1.3

—

(3049539) Genetic diseases [Identifier] in Blood or Tissue by FISH Nominal

0.00

-0.00

0.0

1.0

—

(43055361) Metamyelocytes/Leukocytes [Pure number fraction] in Blood by Manual count

0.00

-0.00

0.0

2.2

—

1.33

—

(3002619) Bacteria identified in Specimen by Culture

0.00

-0.00

0.0

1.2

—

(3028369) Herpes simplex virus 1+2 DNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

1.3

—

(3002148) Methylenedioxymethamphetamine [Presence] in Urine by Screen method

0.00

-0.00

0.0

1.1

—

(21491868) Cryoglobulin [Mass/volume] in Serum

0.00

-0.00

0.0

1.0

—

(3017817) Protein [Mass] in Urine collected for unspecified duration

0.00

-0.00

0.0

10.4

—

1244.40

—

(3038288) Influenza virus B RNA [Presence] in Specimen by NAA with probe detection

0.98

-0.00

2.2

1.7

—

Mortality – FinRegistry

↥

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

Relationships between endpoints

↥

Index endpoint: Z21_UPPER_ARM – Upper arm

GWS hits: -

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

≡ Risteys

R14

FinnGen R13 + FinRegistry

FinnGen R12 + FinRegistry

FinnGen R11 + FinRegistry

FinnGen R10 + FinRegistry

FinnGen R10

FinnGen R9

FinnGen R8

FinnGen R7

FinnGen R6

FinnGen R5

FinnGen R4

FinnGen R3

Upper arm

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

1. Apply sex-specific rule

2. Check conditions

3. Check pre-conditions, main-only, mode, registry filters

4. Check minimum number of events

5. Include endpoints

6. Filter based on genotype QC (FinnGen only)

All original rules

Similar endpoints

Case counts by codes

Upset plot

Case counts by code for Upper arm (Z21_UPPER_ARM)

Summary Statistics

-FinRegistry-

-FinnGen-

Key figures

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

CodeWAS

Matched cohort

LabWAS

Mortality – FinRegistry

Relationships between endpoints