This is a non-core endpoint: only basic statistics are computed.
Failure of sterile precautions during surgical operation
VWXY20_STERI_VAROT_PETTA_KIRURGISEN_TAI_MUUN_LAAKETIETEELLISEN_HOIDON_AIKANA
No definition available.
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
519870 |
1. Apply sex-specific ruleNone |
519870 |
2. Check conditionsNone |
519870 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters: 2 out of 7 registries used, show all original rules. |
117 |
4. Check minimum number of eventsNone |
117 |
5. Include endpointsNone |
117 |
6. Filter based on genotype QC (FinnGen only) |
111 |
Control definitions (FinnGen only)
Controls for this endpoint are individuals that are not cases.
Extra metadata
- Level in the ICD hierarchy
- 4
- First used in FinnGen datafreeze
- DF9
- Parent code in ICD-10
- Y6
Similar endpoints
↥List of similar endpoints to
Failure of sterile precautions during surgical operation
based on the number of shared cases.
Similar with more cases:
- Misadventures to patients during surgical and medical care
- Complications of medical and surgical care
- External causes of morbidity and mortality
- Injury, poisoning and certain other consequences of external causes
- Any operation in hilmo
Similar with less cases:
None
Case counts by codes
↥Summary Statistics
↥-FinRegistry-
This endpoint is excluded from FinRegistry analyses (omitted endpoint).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 111 | 61 | 50 |
| Unadjusted period prevalence (%) | 0.02 | 0.02 | 0.02 |
| Median age at first event (years) | 65.96 | 63.84 | 68.54 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
Not a core endpoint, no data to show.
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 117
- Matched controls
- 1170
TimeCodeWAS
↥TODO / Current known limitations:
- Only showing the top 500 codes, because showing all (sometimes 20k) makes the page too slow.
- Legend / how to read the glyphs.
- Proper column names.
- Show details (e.g. Fisher or Chi-square test, N cases and N controls) when clicking on a row.
- Explanation on the underlying data / how the TimeCodeWAS is done (e.g. matched cases / controls, eligibility).
- Download CSV not working.
- No filters and sorters.
- Limited amount of endpoints with TimeCodeWAS data.
- Cross-links to Risteys lab test pages for lab test codes.
Y62.9 (45552029)
Y62.0 (45600277)
WX408 (2001310808)
20578-1 (3005715)
50373000 (4177340)
60621009 (4245997)
T84.5 (45556287)
T81.4 (45575538)
OMOP4822462 (581458)
GD1AA (2001303617)
SMOKING-2-3-0 (2002330113)
J01DB01 (21602870)
ERIP (262)
890-4 (3001079)
620-5 (3007853)
14749-6 (3013826)
600-7 (3023368)
43409-2 (3042936)
34531-4 (3044640)
251B00000X (38004193)
1 (38004446)
2 (38004447)
14 (38004459)
77397-8 (46236098)
21 (8717)
22 (8756)
1988-5 (3020460)
28539-5 (3035941)
30428-7 (3024731)
718-7 (3000963)
26464-8 (3010813)
20570-8 (3009542)
26453-1 (3026361)
26515-7 (3007461)
OMOP4822461 (32036)
2823-3 (3023103)
2951-2 (3019550)
14682-9 (3020564)
OMOP4822458 (581477)
ER (9203)
IP (9201)
20 (38004465)
62238-1 (40764999)
OP (9202)
14631-6 (3006140)
93 (38004510)
1742-6 (3006923)
11 (38004456)
6768-6 (3035995)
51480-2 (3031040)
11524-6 (3013512)
34714-6 (3032080)
69738-3 (42870588)
OMOP5117446 (33004)
58410-2 (40761511)
1995-0 (3021347)
751-8 (3013650)
30180-4 (3022096)
26450-7 (3006504)
26444-0 (3006315)
26485-3 (3019069)
26511-6 (3018010)
26478-8 (3002030)
26484-6 (3001604)
26474-7 (3019198)
S18 (2002000983)
26449-9 (3013115)
14879-1 (3003458)
N02BE01 (21604344)
28540-3 (3003338)
30385-9 (3002385)
34534-8 (3044889)
LabWAS
↥Mortality – FinRegistry
↥This endpoint is excluded from FinRegistry analyses (omitted endpoint).
Relationships between endpoints
↥Index endpoint: VWXY20_STERI_VAROT_PETTA_KIRURGISEN_TAI_MUUN_LAAKETIETEELLISEN_HOIDON_AIKANA – Failure of sterile precautions during surgical operation
GWS hits: -
This endpoint is excluded from FinRegistry analyses (omitted endpoint).