Effects of other deprivation

ST19_EFFEC_OTHER_DEPRI

No definition available.

Endpoint definition

↥

Endpoint definition steps	FinnGen
Phenotype data	520210
1. Apply sex-specific rule None	520210
2. Check conditions None	520210
3. Check pre-conditions, main-only, mode, registry filters Registry filters: Hospital discharge: ICD-10 — T73 Cause of death: ICD-10 — T73 2 out of 7 registries used, show all original rules.	92
4. Check minimum number of events None	92
5. Include endpoints None	92
6. Filter based on genotype QC (FinnGen only)	92

Control definitions (FinnGen only)

Control exclude: ST19_OTHER_UNSPE_EFFEC_EXTER_CAUSES

Extra metadata

Level in the ICD hierarchy: 3
First used in FinnGen datafreeze: DF4
Parent code in ICD-10: T6[6-9]|T7[0-8]
Name in latin: Effectus aliarum privationum

NAME	ST19_EFFEC_OTHER_DEPRI
CONTROL_EXCLUDE	ST19_OTHER_UNSPE_EFFEC_EXTER_CAUSES
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	T73
HD_ICD_9
HD_ICD_8
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	T73
COD_ICD_9
COD_ICD_8
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

Similar endpoints

↥

List of similar endpoints to Effects of other deprivation based on the number of shared cases.

Similar with more cases:

Similar with less cases:

None

Case counts by codes

↥

FinnGen case counts by registry codes:

Upset plot

Full data table

Summary Statistics

↥

-FinRegistry-

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

-FinnGen-

Key figures

	All	Female	Male
Number of individuals	92	57	35
Unadjusted period prevalence (%)	0.02	0.02	0.02
Median age at first event (years)	38.09	40.53	34.11

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS (R11)

↥

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log₁₀(p-value) ≥ 6.

Matched cohort

Matched cases
88: Matched controls
882

Code

Vocabulary

Description

Odds Ratio

-log₁₀(p)

N matched cases

N matched controls

T73.3

ICD-10 Finland

Exhaustion due to excessive exertion

2640.6

84.3

T73.0

ICD-10 Finland

Effects of hunger

+∞

6.3

T73.9

ICD-10 Finland

Effect of deprivation, unspecified

+∞

6.3

LabWAS

↥

N Cases

N Controls

-log₁₀(p)

cases

controls

cases

controls

unit

-log₁₀(p)

N cases

N controls

(3027545) Mycoplasma pneumoniae Ab [Presence] in Serum by Immunoassay

4.22

2.86

1.8

1.3

—

(3051714) Fibrin D-dimer FEU [Mass/volume] in Platelet poor plasma

164

2.12

2.64

1.7

2.0

0.70

1.11

mg/l

0.76

117

(3029287) Urinalysis microscopic panel [#/volume] - Urine by Automated count

250

1.97

2.51

4.7

2.9

—

(3027238) Thyroperoxidase Ab [Units/volume] in Serum or Plasma

2.62

2.43

1.0

1.4

34.80

160.57

iu/ml

—

(3010521) Mycoplasma pneumoniae IgM Ab [Presence] in Serum by Immunoassay

3.88

2.42

1.8

1.1

—

(3003396) Base excess in Arterial blood by calculation

2.52

2.39

2.1

7.2

0.44

1.55

mmol/l

—

(3028300) Cannabinoids [Presence] in Urine

2.54

2.16

2.0

1.6

—

(3027944) Amphetamines [Presence] in Urine

2.54

2.16

2.0

1.6

—

(3027008) Opiates [Presence] in Urine

2.54

2.16

2.0

1.6

—

(3000764) Benzodiazepines [Presence] in Urine

2.49

2.09

2.0

1.6

—

(3027801) Oxygen [Partial pressure] in Arterial blood

2.36

2.00

2.2

7.2

14.13

12.94

kpa

0.31

(3027946) Carbon dioxide [Partial pressure] in Arterial blood

2.36

2.00

2.2

7.2

4.80

5.00

kpa

0.50

(3041942) Cyclic citrullinated peptide Ab [Units/volume] in Serum

142

1.93

1.89

1.4

1.3

0.93

8.30

u/ml

—

(3016879) Cocaine [Presence] in Urine

2.41

1.83

2.1

1.6

—

(3019198) Lymphocytes [#/volume] in Blood

386

1.72

1.76

6.8

5.6

1.86

1.90

e9/l

0.19

352

(36305247) Microscopic observation [Identifier] in Isolate by Gram stain

4.00

1.74

2.0

1.2

—

(3000991) Gas panel - Venous blood

2.41

1.71

5.8

7.5

—

(3052851) Hemolysis interference index of Serum or Plasma

3.30

1.69

2.0

2.2

—

(36032269) Testosterone Free [Moles/volume] in Serum or Plasma by calculation

3.46

1.54

4.0

2.5

242.80

274.40

pmol/l

—

(3024561) Albumin [Mass/volume] in Serum or Plasma

285

1.64

1.47

9.3

4.9

37.48

36.77

g/l

0.33

272

(1001926) Buprenorphine [Presence] in Urine by Screen method

2.32

1.46

2.3

1.6

—

(3029879) Epithelial cells.squamous [#/volume] in Urine by Automated count

122

1.82

1.42

5.1

2.4

6.44

3.40

e6/l

—

(3011288) Drugs identified in Urine by Screen method

2.32

1.41

2.3

1.6

—

(3001604) Monocytes [#/volume] in Blood

372

1.61

1.41

7.1

5.6

0.58

0.56

e9/l

0.20

338

(42870588) Differential panel, method unspecified - Blood

252

1.63

1.38

6.4

5.4

—

(36031861) Influenza virus A and B and SARS-CoV-2 (COVID-19) and Respiratory syncytial virus RNA panel - Respiratory system specimen by NAA with probe detection

0.00

1.35

0.0

1.8

—

(3050129) First trimester maternal screen panel - Serum or Plasma

0.00

1.35

0.0

1.4

—

(3017766) Complement C4 [Mass/volume] in Serum or Plasma

2.60

1.32

2.7

1.5

0.20

0.25

g/l

—

(3002582) Erythrocytes [#/volume] in Urine

219

1.63

1.31

5.4

2.8

17.35

60.99

e6/l

0.81

166

(3021589) Normoblasts [#/volume] in Blood

322

1.56

1.26

7.7

8.8

0.00

0.01

e9/l

0.50

266

(3032080) INR in Blood by Coagulation assay

250

1.57

1.21

5.3

8.6

1.00

1.17

inr

—

(3023368) Bacteria identified in Blood by Culture

179

1.63

1.21

3.5

4.1

—

(3037467) Urinalysis macro (dipstick) panel - Urine

502

1.56

1.19

5.6

4.0

—

(3006315) Basophils [#/volume] in Blood

373

1.53

1.19

7.2

5.6

0.04

e9/l

0.20

339

(586526) SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with probe detection

2.15

1.18

1.8

1.1

—

(3021337) Troponin I.cardiac [Mass/volume] in Serum or Plasma

129

1.70

1.18

4.0

3.1

19.64

105.05

ng/l

1.48

(3019050) Tissue transglutaminase IgA Ab [Units/volume] in Serum

190

1.60

1.15

1.3

0.71

1.42

u/ml

—

(3024950) Chlamydia trachomatis DNA [Presence] in Urine by NAA with probe detection

132

1.66

1.09

1.8

2.3

—

(3048689) Calprotectin [Mass/mass] in Stool

1.75

1.09

1.8

2.0

56.90

87.29

ug/g

—

(40758558) Short blood count panel - Blood

175

1.59

1.08

12.9

8.5

—

(3036481) Cortisol [Moles/volume] in Serum or Plasma

1.88

1.06

4.8

2.2

377.58

363.68

nmol/l

0.10

(3013707) Erythrocyte sedimentation rate by Westergren method

561

1.54

1.06

3.8

8.42

10.18

mm/h

0.79

520

(4010399)

2.01

1.06

1.6

1.3

—

(40762366) Oxygen capacity [Volume Fraction] in Arterial blood

2.14

1.05

2.4

7.4

—

(3049804) Myeloperoxidase IgG Ab [Units/volume] in Serum

2.34

1.04

1.0

1.1

—

(3012544) pH of Venous blood

1.91

1.03

6.5

3.6

—

(3003510) Neisseria gonorrhoeae DNA [Presence] in Urine by NAA with probe detection

118

1.65

1.00

1.6

2.1

—

(3016431) Calcium.ionized [Moles/volume] adjusted to pH 7.4 in Serum or Plasma

325

1.47

1.00

14.1

6.6

1.22

mmol/l

0.15

282

(3019800) Troponin T.cardiac [Mass/volume] in Serum or Plasma

252

1.48

0.96

3.4

3.0

13.85

38.61

ng/l

1.36

140

(3028653) Carboxyhemoglobin/Hemoglobin.total in Arterial blood

1.96

0.96

1.7

8.9

1.34

1.31

—

(36032419) SARS-CoV-2 (COVID-19) Ag [Presence] in Upper respiratory specimen by Immunoassay

1.96

0.96

1.1

1.5

—

(3006217) Methemoglobin/Hemoglobin.total in Arterial blood

1.96

0.96

1.7

8.9

0.66

—

(3011371) Neisseria gonorrhoeae DNA [Presence] in Specimen by NAA with probe detection

1.81

0.95

1.4

2.0

—

(3004248) Sex hormone binding globulin [Moles/volume] in Serum or Plasma

2.30

0.95

2.7

1.8

41.67

36.22

nmol/l

—

(3030467) Casts [#/volume] in Urine by Automated count

198

1.51

0.95

4.4

2.8

0.10

0.17

e6/l

0.46

144

(3021601) Nitrite [Presence] in Urine by Test strip

359

1.43

0.90

5.4

4.7

0.00

estimate

—

(3018418) pH of Serum or Plasma

193

1.48

0.86

9.4

4.0

7.39

7.40

—

(3018095) Leukocytes [#/volume] in Urine

257

1.44

0.86

6.4

3.4

16.68

143.86

e6/l

0.61

173

(3003191) Choriogonadotropin (pregnancy test) [Presence] in Serum or Plasma

2.00

0.86

2.5

2.3

—

(3048929) Epstein Barr virus Ab [Presence] in Serum

1.93

0.83

1.3

1.5

—

(3016293) Bicarbonate [Moles/volume] in Serum or Plasma

1.93

0.83

3.2

6.0

22.55

25.24

mmol/l

—

(3024891) Influenza virus A+B Ag [Presence] in Specimen

1.93

0.83

1.3

1.1

—

(3013650) Neutrophils [#/volume] in Blood by Automated count

432

1.41

0.83

11.4

11.1

3.84

4.12

e9/l

0.49

388

(1002224) Polysomnography panel

1.82

0.78

1.2

—

(40760892) CBC W Ordered Manual Differential panel - Blood

181

1.44

0.73

2.2

4.7

—

(3019060) Gas panel - Arterial blood

1.81

0.73

1.1

4.2

—

(3000494) Fungus identified in Specimen by Culture

1.64

0.73

1.4

1.3

—

(3030306) Epithelial cells.non-squamous [#/volume] in Urine by Automated count

128

1.51

0.73

3.4

2.4

0.73

0.77

e6/l

—

(3000492) Spirometry study

1.67

0.72

1.3

1.5

—

(3018251) Fasting glucose [Moles/volume] in Serum or Plasma

710

1.52

0.72

4.3

4.0

5.66

5.79

mmol/l

0.41

659

(36304419) Bacteria [Presence] in Urine

191

1.42

0.71

4.8

2.8

—

(3007853) Bacteria identified in Skin by Aerobe culture

1.62

0.69

2.7

1.5

—

(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip

277

1.36

0.67

4.4

3.2

—

(3022145) Colonoscopy Study observation

1.60

0.66

1.2

1.3

—

(3009261) Glucose [Presence] in Urine by Test strip

364

1.34

0.66

4.3

3.2

0.00

estimate

—

(3028707) Methadone [Presence] in Urine by Screen method

1.76

0.65

3.4

1.7

—

(43054903) Holo-transcobalamin II [Moles/volume] in Serum

269

1.35

0.64

2.0

1.9

110.49

97.84

pmol/l

0.38

133

(3001122) Ferritin [Mass/volume] in Serum or Plasma

346

1.33

0.64

3.0

2.7

119.17

90.61

ug/l

0.67

318

(3035350) Ketones [Presence] in Urine by Test strip

366

1.33

0.63

4.3

3.2

0.00

estimate

—

(3011397) Hemoglobin [Presence] in Urine by Test strip

168

1.41

0.63

3.4

2.9

—

(3006093) Chlamydia trachomatis DNA [Presence] in Specimen by NAA with probe detection

1.63

0.61

1.5

2.1

—

(3019902) Methicillin resistant Staphylococcus aureus [Presence] in Specimen by Organism specific culture

1.60

0.58

2.3

3.6

—

(3044889) 12 lead EKG panel

460

1.30

0.56

4.4

3.2

—

(3007164) IgA [Mass/volume] in Serum or Plasma

181

1.36

0.55

1.5

1.3

2.56

2.35

g/l

0.22

109

(3010813) Leukocytes [#/volume] in Blood

858

0.67

0.55

24.3

18.6

6.76

6.60

e9/l

0.36

839

(3000963) Hemoglobin [Mass/volume] in Blood

858

0.67

0.55

24.4

18.6

138.67

137.02

g/l

0.52

846

(3035941) MCH [Entitic mass]

858

0.67

0.55

24.1

18.5

30.34

30.20

0.38

846

(3024731) MCV [Entitic volume]

858

0.67

0.55

24.2

18.5

90.59

90.31

0.23

846

(3007461) Platelets [#/volume] in Blood

857

0.68

0.54

24.2

18.6

257.33

252.28

e9/l

0.35

839

(3009201) Thyrotropin [Units/volume] in Serum or Plasma

671

1.34

0.48

6.3

4.7

1.76

1.84

mu/l

0.27

624

(3001784) Prostate Specific Ag Free/Prostate specific Ag.total in Serum or Plasma

121

1.39

0.48

4.0

3.9

23.04

19.75

—

(3019284) Hepatitis B virus surface Ag [Presence] in Serum

173

0.71

0.47

1.6

1.7

—

(3048773) Triglyceride [Moles/volume] in Serum or Plasma --fasting

706

1.34

0.44

3.6

1.37

1.25

mmol/l

0.77

658

(3029937) Albumin [Presence] in Urine by Test strip

188

1.30

0.43

5.7

3.1

0.00

estimate

—

(3024135) Streptococcus.beta-hemolytic [Presence] in Throat by Organism specific culture

199

1.28

0.40

2.1

1.6

—

(3004383) Neutrophil cytoplasmic Ab.classic [Titer] in Serum by Immunofluorescence

0.00

0.40

0.0

1.1

—

(40768804) Tissue Pathology biopsy report

285

1.25

0.40

2.3

1.9

—

(36660697) Celiac disease serology panel - Serum

1.30

0.37

1.3

1.2

—

(3025941) Bacteria identified in Stool by Culture

1.42

0.36

1.3

1.2

—

(3013512) EKG study

193

1.26

0.35

3.0

3.7

—

(3017732) Neutrophils [#/volume] in Blood

1.32

0.31

1.4

2.4

4.29

4.15

e9/l

—

(3025159) Blasts/100 leukocytes in Blood

1.29

0.31

2.7

4.2

—

0.00

—

(4035726)

1.29

0.31

1.4

1.3

—

(3021440) Promyelocytes/100 leukocytes in Blood

1.29

0.31

2.7

4.1

—

0.13

—

(3022948) Iron [Moles/volume] in Serum or Plasma

112

1.29

0.30

3.2

2.3

15.56

14.40

umol/l

0.34

103

(3041096) Erythrocytes [Presence] in Urine by Automated

206

1.22

0.30

4.6

3.0

—

(3043924) Respiratory syncytial virus RNA [Identifier] in Specimen by NAA with probe detection

1.35

0.29

1.8

1.7

—

(3019225) pH of Specimen

1.34

0.29

3.4

4.9

—

(43054914) Glucose tolerance 2 hours panel - Serum or Plasma

1.30

0.28

1.5

2.1

—

(3027945) Reticulocytes/100 erythrocytes in Blood

0.70

0.27

1.4

3.3

1.32

1.73

—

(3001079) Blood group antibody screen [Presence] in Serum or Plasma

335

0.84

0.27

4.4

3.7

—

(3038288) Influenza virus B RNA [Presence] in Specimen by NAA with probe detection

1.22

0.26

2.0

1.7

—

(3021879) Hepatitis B virus core Ab [Presence] in Serum

0.72

0.25

1.3

1.5

—

(3009542) Hematocrit [Volume Fraction] of Blood

721

1.22

0.25

19.7

13.9

41.50

40.92

0.46

580

(3002256) Pathology report gross observation

1.30

0.23

1.2

—

(3004119) Hemoglobin [Mass/volume] in Venous blood

1.30

0.23

6.6

3.6

118.00

133.00

g/l

—

(3023024) Carbon dioxide [Partial pressure] in Capillary blood

1.20

0.22

3.4

2.9

5.10

5.03

kpa

—

(46236098) ABO and Rh group [Type] in Blood by Confirmatory method

165

0.82

0.21

2.4

2.1

—

(3042206) Streptococcus agalactiae Ag [Presence] in Vaginal fluid

0.00

0.21

0.0

1.1

—

(3003265) Liver kidney microsomal Ab [Titer] in Serum by Immunofluorescence

0.00

0.21

0.0

1.3

—

(3053028) Streptococcus sp identified in Specimen by Organism specific culture

0.00

0.21

0.0

1.0

—

(21494755) Public health laboratory ask at order entry panel

112

0.78

0.21

1.0

1.4

—

(3019832) Treponema pallidum Ab [Presence] in Serum

113

0.77

0.21

1.9

1.8

—

(4146454)

0.00

0.21

0.0

3.0

—

(3019539) Treponema pallidum Ab [Titer] in Serum by Hemagglutination

0.00

0.21

0.0

1.4

—

(3020682) Albumin/Creatinine [Ratio] in Urine

175

0.83

0.21

6.1

4.2

2.72

13.16

mg/mmol

—

119

(3035285) Chloride [Moles/volume] in Venous blood

0.00

0.21

0.0

3.2

—

106.00

—

(3033705) Calcium.ionized [Moles/volume] in Venous blood

0.00

0.21

0.0

3.2

—

(3025130) Human papilloma virus identified in Specimen

0.00

0.21

0.0

2.4

—

(3041354) Potassium [Moles/volume] in Venous blood

0.00

0.21

0.0

3.2

—

3.95

—

(3047826) Mullerian inhibiting substance [Mass/volume] in Serum or Plasma

0.00

0.20

0.0

1.0

—

4.43

—

(40761535) Cells panel - Urine sediment

1.21

0.20

2.3

3.2

—

(3006923) Alanine aminotransferase [Enzymatic activity/volume] in Serum or Plasma

811

0.82

0.20

11.9

9.6

28.75

27.00

u/l

0.38

787

(3005785) Creatine kinase.MB [Mass/volume] in Serum or Plasma

1.19

0.20

1.3

1.9

1.43

4.77

ug/l

—

(3004410) Hemoglobin A1c/Hemoglobin.total in Blood

675

1.15

0.18

5.1

4.9

38.37

39.11

mmol/mol

0.22

638

(3012516) Albumin [Mass/volume] in Urine

162

0.84

0.18

4.9

3.5

8.12

78.55

mg/l

—

110

(3001308) Cholesterol in LDL [Moles/volume] in Serum or Plasma

758

1.19

0.18

4.4

4.1

2.94

2.86

mmol/l

0.29

700

(3017181) Myelocytes/100 leukocytes in Blood

1.14

0.18

2.7

3.9

—

1.06

—

(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection

594

1.13

0.17

3.9

3.5

—

(3044491) Cholesterol non HDL [Mass/volume] in Serum or Plasma

0.73

0.17

1.2

1.6

—

(3002109) Cholesterol in LDL/Cholesterol in HDL [Mass Ratio] in Serum or Plasma

1.22

0.17

1.4

1.7

—

(3042936) Bacteria identified in Isolate by Culture

103

1.19

0.14

3.5

1.8

—

(3018006) Microscopic observation [Identifier] in Cervix by Cyto stain.thin prep

142

1.15

0.14

1.2

1.4

—

(3002385) Erythrocyte distribution width [Ratio]

650

1.11

0.12

23.2

15.8

13.36

13.56

0.71

643

(40761511) CBC panel - Blood by Automated count

805

1.17

0.11

11.5

11.4

—

(3020460) C reactive protein [Mass/volume] in Serum or Plasma

775

1.14

0.10

18.9

12.6

15.41

21.62

mg/l

1.79

592

(3013139) Helicobacter pylori Ag [Presence] in Stool

1.12

0.10

1.0

1.4

—

(3051552) Clostridioides difficile toxin genes [Presence] in Stool by NAA with probe detection

1.12

0.10

2.4

1.7

—

(46235355) HIV 1 and 2 tests - Meaningful Use set

206

0.90

0.10

2.2

2.0

—

(3004716) Salmonella sp identified in Stool by Organism specific culture

1.09

0.10

1.8

1.3

—

(43534045) MCM6 gene c.-13910C>T and -13915T>G [Identifier] in Blood or Tissue by Molecular genetics method Nominal

1.07

0.09

1.0

—

(3044938) Influenza virus A RNA [Presence] in Specimen by NAA with probe detection

107

1.14

0.09

1.8

—

(3002179) Metamyelocytes/100 leukocytes in Blood

1.06

0.09

2.7

4.0

—

0.17

—

(3033319) Streptococcus pyogenes Ag [Presence] in Throat

123

0.88

0.08

1.2

1.6

—

(40761536) Microorganisms panel - Urine sediment

1.10

0.08

4.3

3.2

—

(1761868) Lipid panel - Serum or Plasma

285

1.08

0.08

2.7

2.6

—

(3026910) Gamma glutamyl transferase [Enzymatic activity/volume] in Serum or Plasma

565

1.07

0.07

2.8

2.9

32.38

42.80

u/l

1.57

537

(3017143) Hepatitis C virus Ab [Presence] in Serum

131

0.90

0.06

1.5

—

(3026008) Bacteria identified in Urine by Culture

198

1.08

0.06

5.2

2.8

—

(3020564) Creatinine [Moles/volume] in Serum or Plasma

800

1.10

0.05

18.4

13.7

80.51

74.70

umol/l

0.42

800

(40768797) Stomach Pathology biopsy report

1.11

0.04

1.3

—

(3044640) Blood type and Crossmatch panel - Blood

220

1.06

0.04

2.2

—

(40764999) Glomerular filtration rate/1.73 sq M.predicted [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (CKD-EPI)

711

1.06

0.03

13.9

11.4

89.34

87.92

ml/min/173m2

0.19

575

(3023602) Cholesterol in HDL [Moles/volume] in Serum or Plasma

742

1.06

0.02

4.1

3.9

1.33

1.45

mmol/l

2.09

689

(3003694) ABO and Rh group [Type] in Blood

218

0.95

0.02

1.6

1.5

—

(3019550) Sodium [Moles/volume] in Serum or Plasma

743

0.98

0.00

18.5

13.4

139.70

139.71

mmol/l

0.01

725

(3019900) Cholesterol [Moles/volume] in Serum or Plasma

746

1.03

0.00

4.1

3.9

4.75

4.73

mmol/l

0.05

696

(3023103) Potassium [Moles/volume] in Serum or Plasma

744

0.97

0.00

18.7

13.5

3.98

3.93

mmol/l

0.93

725

(3008898) HLA-B27 [Presence]

0.94

0.00

1.0

1.1

—

(3046896) Herpes virus 6 DNA [Presence] in Cerebral spinal fluid by NAA with probe detection

0.00

0.0

1.0

—

(1617658) Protocol used for examination of sentinel lymph nodes

0.00

0.0

1.0

—

(3045783) Sodium and Potassium panel [Moles/volume] - Serum or Plasma

0.93

0.00

3.3

5.3

—

(3041423) Sjogrens syndrome-A extractable nuclear 60kD Ab [Units/volume] in Serum

0.00

0.0

1.0

—

(3005757) Coagulation factor V activity actual/normal in Platelet poor plasma by Coagulation assay

0.00

0.0

1.0

—

123.50

—

(3039443) Prostate specific Ag panel - Serum or Plasma

0.00

0.0

1.4

—

(3002670) Multiple inhalant allergen IgE Ab [Units/volume] in Serum

0.00

0.0

1.6

—

(3012413) Glucose [Moles/volume] in Serum or Plasma --2 hours post meal

0.00

0.0

1.6

—

(21494434) Karyotype in Bone marrow

0.00

0.0

1.0

—

(44816752) ERBB2 gene copy number/nucleus in Tissue by FISH

0.00

0.0

1.2

—

(3044936) Clostridioides difficile toxin A+B [Presence] in Stool by Immunoassay

0.00

0.0

1.4

—

(21491868) Cryoglobulin [Mass/volume] in Serum

0.00

0.0

1.0

—

(3016881) Enterovirus RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.7

—

(3023601) Vancomycin resistant enterococcus [Presence] in Specimen by Organism specific culture

0.00

0.0

2.0

—

(3025023) Rhinovirus RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.8

—

(3012202) Varicella zoster virus DNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.3

—

(3008757) Leukocyte morphology finding [Identifier] in Blood

0.00

0.0

4.4

—

(3011391) Calcitriol [Moles/volume] in Serum or Plasma

0.00

0.0

1.6

—

(3044927) Protein electrophoresis panel - Urine

0.00

0.0

1.2

—

(40764126) Parainfluenza virus RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.0

—

(3029075) Extractable nuclear Ab panel - Serum

0.00

0.0

1.0

—

(3000093) Morphology [Interpretation] in Blood Narrative

0.00

0.0

1.7

—

(37020937) Giardia lamblia DNA [Presence] in Stool by NAA with probe detection

0.00

0.0

1.0

—

(4024509)

0.00

0.0

1.2

—

(3013201) Beta-2-Microglobulin [Mass/volume] in Serum or Plasma

0.00

0.0

1.2

—

2.48

—

(40766048) U1 small nuclear ribonucleoprotein 70kD Ab [Units/volume] in Serum by Immunoassay

0.00

0.0

1.0

—

(3040363) Hepatitis A virus IgG Ab [Presence] in Serum by Immunoassay

0.00

0.0

1.2

—

(3025018) Bordetella pertussis Ab [Titer] in Serum

0.00

0.0

1.0

—

(3009550) Parvovirus B19 IgG Ab [Titer] in Serum

0.00

0.0

1.1

—

(42529200) Cancer Ag 15-3 [Units/volume] in Serum or Plasma by Immunoassay

0.00

0.0

5.0

—

25.41

—

(3008364) Apolipoprotein A-I [Mass/volume] in Serum or Plasma

0.00

0.0

1.2

—

(3028369) Herpes simplex virus 1+2 DNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.2

—

(40758895) Direct antiglobulin test.complement C3d specific reagent [Presence] on Red Blood Cells

0.00

0.0

2.7

—

(4211845)

0.00

0.0

1.0

—

(3005082) Progesterone [Moles/volume] in Serum or Plasma

0.00

0.0

1.0

—

31.13

—

(3014791) Apolipoprotein B [Mass/volume] in Serum or Plasma

0.00

0.0

1.2

—

1.03

—

(37020957) Sapovirus genogroups I+II+IV+V RNA [Presence] in Stool by NAA with probe detection

0.00

0.0

1.2

—

(42869457) Rotavirus RNA [Identifier] in Stool by NAA with probe detection

0.00

0.0

1.2

—

(40758897) Direct antiglobulin test.IgG specific reagent [Presence] on Red Blood Cells

0.00

0.0

2.7

—

(40757349) CD3+CD4+ (T4 helper) cells/CD3+CD8+ (T8 suppressor cells) cells [# Ratio] in Blood

0.00

0.0

1.0

—

(36305771) Cryptosporidium sp DNA [Presence] in Stool by NAA with probe detection

0.00

0.0

1.0

—

(3011547) Coagulation factor VII activity actual/normal in Platelet poor plasma by Coagulation assay

0.00

0.0

1.0

—

174.20

—

(4281824)

0.00

0.0

1.0

—

(3045066) Thymidine kinase [Enzymatic activity/volume] in Serum

0.00

-0.00

0.0

1.5

—

25.74

—

(3026515) Parvovirus B19 IgM Ab [Units/volume] in Serum

0.00

-0.00

0.0

1.1

—

(3043109) Cytology report of Tissue fine needle aspirate Cyto stain

0.00

-0.00

0.0

1.0

—

(3045142) Bone marrow Pathology biopsy report

0.00

-0.00

0.0

1.4

—

(40762119) U1 small nuclear ribonucleoprotein 70kD Ab [Units/volume] in Serum

0.00

-0.00

0.0

1.1

—

(3021236) Streptolysin O Ab [Units/volume] in Serum or Plasma

0.00

-0.00

0.0

1.4

—

109.94

—

Mortality – FinRegistry

↥

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

Relationships between endpoints

↥

Index endpoint: ST19_EFFEC_OTHER_DEPRI – Effects of other deprivation

GWS hits: -

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

≡ Risteys

FG R12 + FR

FinnGen R11 + FinRegistry

FinnGen R10 + FinRegistry

FinnGen R10

FinnGen R9

FinnGen R8

FinnGen R7

FinnGen R6

FinnGen R5

FinnGen R4

FinnGen R3

Effects of other deprivation

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

1. Apply sex-specific rule

2. Check conditions

3. Check pre-conditions, main-only, mode, registry filters

4. Check minimum number of events

5. Include endpoints

6. Filter based on genotype QC (FinnGen only)

All original rules

Similar endpoints

Case counts by codes

Upset plot

Case counts by code for Effects of other deprivation (ST19_EFFEC_OTHER_DEPRI)

Summary Statistics

-FinRegistry-

-FinnGen-

Key figures

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

CodeWAS (R11)

Matched cohort

LabWAS

Mortality – FinRegistry

Relationships between endpoints