Other congenital malformations of integument, including avohilmo

Q17_OTHER_CONGEN_MALFO_INTEG_WIDE

Endpoint definition

Report an error or suggest an improvement for this endpoint codes

Endpoint definition steps

FinnGen

Phenotype data

557745

1. Apply sex-specific rule

None

557745

2. Check conditions

None

557745

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Primary healthcare outpatient: ICD-10 Q84
  • Hospital discharge: ICD-10 Q84
  • Cause of death: ICD-10 Q84

3 out of 7 registries used, show all original rules.

126

4. Check minimum number of events

None

126

5. Include endpoints

None

126

6. Filter based on genotype QC (FinnGen only)

113

Control definitions (FinnGen only)

Control exclude
Q17_OTHER_CONGEN_MALFO

Extra metadata

Level in the ICD hierarchy
3
First used in FinnGen datafreeze
DF13
Parent code in ICD-10
Q8
Name in latin
Aliae malformationes congenitae integumenti communis

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

This endpoint is excluded (different definition than used in FinnGen).

-FinnGen-

Key figures

All Female Male
Number of individuals 113 59 54
Unadjusted period prevalence (%) 0.02 0.02 0.02
Median age at first event (years) 61.67 59.49 64.05

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

No data

CodeWAS

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

Matched cohort

Matched cases
119
Matched controls
1190
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
Q84.5
ICD-10 Finland
Enlarged and hypertrophic nails
+∞
90.5
75
*
XCK10
NOMESCO Finland
Photography of fundus of eye
6.9
19.1
36
70
Z3226
NOMESCO Finland
Physiotherapist
4.3
12.9
46
151
L60
ICD-10 Finland
Nail disorders
78.5
12.9
14
*
R4110
NOMESCO Finland
Physiotherapy
4.0
12.4
58
230
E11
ICD-10 Finland
Type 2 diabetes mellitus
4.6
12.0
36
103
L84
ICD-10 Finland
Corns and callosities
13.9
11.9
20
17
Z71.2
ICD-10 Finland
Person consulting for explanation of investigation findings
3.7
11.5
62
268
Z2221
NOMESCO Finland
Medical doctor
3.8
11.3
54
215
L97
ICD-10 Finland
Ulcer of lower limb, not elsewhere classified
12.3
10.7
19
18
A28
ICPC
Limited function/disability NOS
4.0
10.6
39
129
Q84.6
ICD-10 Finland
Other congenital malformations of nails
+∞
10.6
10
*
Q84.9
ICD-10 Finland
Congenital malformation of integument, unspecified
+∞
10.6
10
*
B35.1
ICD-10 Finland
Tinea unguium
5.6
10.5
22
46
ZXE10
NOMESCO Finland
More than one and less than three hours
3.5
10.3
62
283
L60.3
ICD-10 Finland
Nail dystrophy
108.3
9.6
10
*
Q84.8
ICD-10 Finland
Other specified congenital malformations of integument
+∞
9.5
9
*
R5110, ,
SPAT
4.8
9.0
23
57
Z01.0
ICD-10 Finland
Examination of eyes and vision
3.6
8.8
37
133
I50
ICD-10 Finland
Heart failure
12.1
8.6
15
14
Z01.7
ICD-10 Finland
Laboratory examination
3.5
8.5
37
135
Z3231
NOMESCO Finland
Registered nurse
3.1
8.0
51
234
L17
ICPC
Foot/toe symptom/complaint
3.0
7.8
56
274
ZXE00
NOMESCO Finland
One hour or less
2.9
7.6
62
323
ZXD10
NOMESCO Finland
Scheduled procedure
2.9
7.6
58
293
L60.0
ICD-10 Finland
Ingrowing nail
6.9
7.1
17
28
Z71.8
ICD-10 Finland
Other specified counselling
2.8
7.0
55
279
PG1DE
NOMESCO Finland
Other extensive ultrasound examination of artery
8.7
6.8
14
18
WX002
NOMESCO Finland
Sedation and analgesia
3.1
6.8
35
140
Z01.6
ICD-10 Finland
Radiological examination, not elsewhere classified
3.9
6.8
22
65
A46
ICD-10 Finland
Erysipelas
3.3
6.6
30
111
ZXD35
NOMESCO Finland
Usual procedure
8.2
6.6
14
19
WX892
NOMESCO Finland
Monitored bed care
4.3
6.2
17
44
GD1QA
NOMESCO Finland
Supine thorax X-ray examination
3.1
6.2
31
122
Z76.0
ICD-10 Finland
Issue of repeat prescription
2.7
6.1
46
225

LabWAS

OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
35
106
4.26
10.75
1.9
2.2
31.31
31.45
u/l
0.01
29
83
58
263
3.35
9.61
7.8
4.5
—
—
—
0
0
43
168
3.44
8.97
3.4
3.1
3.57
2.67
e6/l
0.22
21
81
72
413
2.88
7.31
2.8
2.0
84.82
95.93
pmol/l
1.29
39
205
54
272
2.80
6.95
2.8
2.1
2.71
2.76
mg/l
0.05
46
238
64
352
2.77
6.94
3.5
3.2
18.62
218.11
e6/l
0.56
41
269
69
401
2.72
6.62
4.7
3.8
84.78
66.15
e6/l
0.15
41
278
59
328
2.58
6.05
5.8
3.9
7.39
7.40
ph
0.03
40
240
22
71
3.57
5.98
2.1
2.2
—
—
—
0
0
56
313
2.49
5.57
3.6
3.0
1.10
0.46
e6/l
0.52
34
230
28
113
2.93
5.28
12.7
12.2
7.42
7.42
ph
0.10
16
72
53
296
2.43
5.20
4.8
2.4
—
—
—
0
0
25
96
3.03
5.13
15.6
9.2
—
—
—
0
0
91
666
2.56
4.61
5.7
4.3
—
64.08
—
0
12
30
135
2.63
4.57
2.1
2.5
—
—
—
0
0
59
362
2.25
4.50
7.9
6.5
—
—
—
0
0
36
179
2.45
4.46
3.4
2.6
2.49
2.45
mmol/l
0.95
31
153
53
313
2.25
4.42
2.6
2.9
—
0.29
—
0
7
30
138
2.57
4.36
1.5
1.6
—
—
—
0
0
52
306
2.24
4.36
2.1
2.1
264.89
213.68
u/l
0.23
47
296
79
552
2.28
4.32
8.2
6.8
0.60
0.58
e9/l
0.40
67
486
80
564
2.28
4.25
8.2
6.9
1.72
1.91
e9/l
0.89
68
509
27
120
2.62
4.20
2.4
1.8
—
—
—
0
0
80
566
2.26
4.19
9.4
7.3
0.20
0.20
e9/l
0.01
69
503
52
313
2.17
4.07
3.7
2.8
—
—
—
0
0
78
552
2.20
4.00
8.3
6.8
0.04
0.04
e9/l
0.68
66
482
33
165
2.38
4.00
2.8
2.2
9.57
14.17
umol/l
2.32
28
154
20
78
2.88
3.96
8.0
9.7
24.39
24.90
mmol/l
0.20
20
78
19
72
2.95
3.96
3.8
2.4
385.74
175.63
ng/l
1.40
19
66
30
145
2.43
3.91
2.8
2.2
20.65
23.96
%
0.39
25
135
65
440
2.05
3.62
3.9
2.8
—
—
estimate
—
0
0
20
82
2.73
3.61
1.6
3.5
0.20
0.21
g/l
0.23
20
74
83
621
2.11
3.44
14.5
10.3
4.32
4.04
e9/l
0.48
74
549
48
296
2.04
3.41
2.0
1.7
20.26
21.37
nmol/l
0.15
43
250
70
496
2.00
3.34
10.0
11.7
0.00
0.00
e9/l
0.49
56
403
105
874
2.71
3.22
38.0
19.3
14.15
13.61
%
2.37
105
863
16
65
2.69
2.93
18.9
10.5
94.29
92.68
%
0.69
16
65
80
610
1.95
2.91
7.9
5.8
7.48
6.52
mmol/l
2.54
74
570
7
14
5.24
2.77
1.1
1.1
—
—
—
0
0
41
257
1.91
2.68
3.9
3.1
351.63
343.37
umol/l
0.16
32
224
27
146
2.10
2.65
13.9
8.0
104.48
104.34
mmol/l
0.05
27
146
64
463
1.83
2.65
2.9
3.2
6.34
6.20
ph
0.34
22
249
37
228
1.90
2.52
2.0
1.9
1.76
1.45
mg/l
0.24
29
186
28
157
2.02
2.50
1.4
1.7
756.48
1226.29
nmol/l
3.04
21
126
11
38
3.08
2.49
1.8
1.1
—
—
—
0
0
62
451
1.78
2.47
36.1
13.5
1.55
1.22
inr
3.31
50
376
18
87
2.26
2.31
1.8
4.5
91.00
73.07
e9/l
—
10
72
110
987
2.51
2.24
28.5
15.5
30.98
22.89
mg/l
1.69
99
786
11
42
2.78
2.21
2.1
1.6
—
5.23
—
0
7
107
940
2.37
2.18
5.9
5.2
1.78
1.90
mu/l
0.49
102
855
49
343
1.73
2.16
8.7
6.7
—
—
—
0
0
23
127
2.01
2.13
7.3
5.1
7.36
7.39
ph
1.46
18
80
8
27
3.10
1.97
1.0
1.1
—
—
—
0
0
29
179
1.82
1.93
4.1
4.1
0.77
0.81
mmol/l
1.18
29
168
8
28
2.99
1.90
1.1
1.2
—
—
—
0
0
6
18
3.45
1.77
2.7
2.6
18.92
13.32
mg/l
—
6
18
47
340
1.63
1.77
4.4
3.2
6.66
7.93
mmol/l
0.88
42
290
13
62
2.23
1.73
7.2
11.6
—
—
—
0
0
112
1034
2.41
1.71
19.6
13.7
—
—
—
0
0
5
14
3.68
1.63
1.6
4.6
408.40
746.21
mg
—
5
14
20
319
0.55
1.63
3.9
3.7
0.00
0.00
estimate
—
10
112
41
294
1.60
1.57
1.5
1.4
2.10
1.81
u/ml
—
5
63
26
382
0.59
1.55
2.5
3.2
—
—
—
0
0
5
15
3.43
1.54
2.6
1.4
—
—
—
0
0
20
118
1.84
1.53
1.2
1.2
—
—
—
0
0
31
432
0.62
1.48
3.5
3.6
0.00
0.00
estimate
—
9
107
71
583
1.54
1.47
3.2
3.7
0.00
0.00
estimate
-0.00
11
113
36
256
1.58
1.41
1.5
1.5
2.12
2.39
g/l
0.34
15
138
5
17
3.02
1.37
1.0
1.0
—
—
—
0
0
104
945
1.80
1.30
4.3
4.9
1.39
1.45
mmol/l
0.71
91
868
31
217
1.58
1.29
2.5
2.8
567.12
543.38
mosm/kgh2o
0.19
25
190
106
969
1.86
1.29
5.8
5.6
2.52
2.63
mmol/l
0.62
99
894
69
573
1.49
1.29
3.2
3.6
0.00
0.00
estimate
-0.00
11
124
17
101
1.80
1.28
1.4
1.5
—
—
—
0
0
26
175
1.62
1.27
1.6
1.7
—
—
—
0
0
104
949
1.76
1.23
4.5
4.9
4.36
4.53
mmol/l
0.97
92
881
69
578
1.46
1.20
3.2
3.6
0.00
0.00
estimate
-0.00
11
125
38
283
1.50
1.20
1.4
1.4
—
—
—
0
0
28
196
1.56
1.16
2.5
3.1
1.51
0.77
ug/l
0.29
13
130
7
33
2.19
1.07
1.3
3.1
—
—
—
0
0
21
140
1.61
1.07
1.3
1.2
—
—
—
0
0
21
140
1.61
1.07
2.7
2.0
96.33
105.74
ug/g
0.08
15
104
48
386
1.41
1.00
2.4
2.1
—
—
—
0
0
20
134
1.59
1.00
1.4
1.6
—
—
—
0
0
86
771
1.42
0.90
4.9
4.4
14.71
14.86
pmol/l
0.23
80
702
27
199
1.46
0.89
2.0
2.2
—
—
—
0
0
98
902
1.49
0.87
3.9
4.2
1.30
1.26
mmol/l
0.26
85
824
6
32
1.92
0.83
1.0
1.2
—
—
—
0
0
26
194
1.44
0.80
1.3
1.3
15.54
32.68
iu/ml
—
8
68
0
24
0.00
0.80
0.0
1.3
—
—
—
0
0
39
316
1.35
0.75
5.0
3.3
125.58
62.03
mg/l
0.45
27
213
7
39
1.84
0.74
1.0
1.5
—
—
—
0
0
27
339
0.74
0.67
2.4
3.7
—
—
—
0
0
8
50
1.64
0.63
1.4
1.2
—
—
—
0
0
8
50
1.64
0.63
1.0
1.1
—
—
—
0
0
0
20
0.00
0.61
0.0
1.1
—
—
—
0
0
0
20
0.00
0.61
0.0
1.1
—
—
—
0
0
25
313
0.75
0.60
3.0
3.5
0.00
0.00
estimate
—
10
104
39
326
1.29
0.59
6.6
3.8
26.67
11.07
mg/mmol
0.46
26
207
6
35
1.75
0.58
2.3
2.9
—
—
—
0
0
6
35
1.75
0.58
1.2
1.6
12.88
11.95
u/l
—
6
26
100
946
1.36
0.54
5.4
5.0
6.24
5.96
mmol/l
0.80
94
858
12
84
1.48
0.51
1.2
1.5
—
—
—
0
0
20
253
0.75
0.51
3.3
3.4
1.02
1.02
kg/l
0.10
13
152
7
45
1.59
0.50
1.6
2.4
—
—
—
0
0
7
45
1.59
0.50
1.6
2.4
—
—
—
0
0
7
46
1.55
0.49
1.6
2.3
—
—
—
0
0
7
46
1.55
0.49
1.6
2.3
—
—
—
0
0
7
46
1.55
0.49
1.6
2.3
—
—
—
0
0
29
242
1.26
0.44
2.6
2.6
9.47
5.49
e6/l
0.27
24
220
0
15
0.00
0.41
0.0
1.5
—
—
—
0
0
0
15
0.00
0.41
0.0
2.7
—
3.17
—
0
15
0
17
0.00
0.41
0.0
2.6
—
1.19
—
0
17
0
17
0.00
0.41
0.0
2.6
—
105.82
—
0
17
0
17
0.00
0.41
0.0
2.6
—
4.05
—
0
17
0
17
0.00
0.41
0.0
1.6
—
—
—
0
0
5
34
1.49
0.41
6.0
2.1
1.11
1.14
g/l
—
5
34
5
34
1.49
0.41
5.6
2.1
0.20
0.22
g/l
—
5
34
0
18
0.00
0.40
0.0
2.9
—
13.02
—
0
18
0
19
0.00
0.39
0.0
1.7
—
0.16
—
0
12
9
67
1.37
0.39
1.3
1.4
—
—
—
0
0
21
254
0.79
0.39
5.6
5.1
—
—
—
0
0
10
134
0.72
0.37
1.5
1.7
—
—
—
0
0
6
41
1.49
0.36
1.5
2.5
—
—
—
0
0
37
325
1.20
0.36
3.5
5.7
8.83
2.06
ug/l
0.41
32
287
7
52
1.37
0.32
13.3
3.9
37.04
36.98
°c
—
7
52
14
111
1.30
0.31
1.5
1.3
—
—
—
0
0
12
94
1.31
0.29
2.2
1.7
—
—
—
0
0
8
62
1.31
0.29
1.0
1.2
—
—
—
0
0
7
95
0.72
0.23
4.1
3.6
—
—
—
0
0
0
11
0.00
0.21
0.0
1.1
—
—
—
0
0
0
12
0.00
0.21
0.0
2.0
—
—
—
0
0
0
12
0.00
0.21
0.0
5.9
—
—
—
0
0
0
12
0.00
0.21
0.0
1.4
—
—
—
0
0
0
12
0.00
0.21
0.0
15.6
—
9.98
—
0
12
0
13
0.00
0.21
0.0
3.3
—
32.08
—
0
13
7
59
1.20
0.18
2.1
2.4
—
14.75
—
0
6
12
104
1.17
0.13
1.3
1.9
—
—
—
0
0
14
124
1.15
0.12
1.4
1.3
—
—
—
0
0
6
53
1.14
0.09
1.0
1.3
—
—
—
0
0
6
53
1.14
0.09
4.5
2.1
47.77
60.01
u/ml
—
6
53
7
82
0.84
0.07
2.6
3.8
1.21
1.22
mmol/l
—
7
71
41
400
1.04
0.03
2.8
4.1
37.12
38.90
ng/l
0.04
19
288
20
205
0.97
0.00
1.5
1.8
479.93
65730809.88
pmol/l
0.50
15
178
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
0
6
0.00
0.00
0.0
1.0
—
168.67
—
0
6
0
6
0.00
0.00
0.0
1.3
—
—
—
0
0
0
5
0.00
0.00
0.0
2.8
—
1820.00
—
0
5
0
5
0.00
0.00
0.0
1.0
—
1566.40
—
0
5
0
5
0.00
0.00
0.0
1.4
—
0.21
—
0
5
0
5
0.00
0.00
0.0
1.2
—
156.00
—
0
5
0
5
0.00
0.00
0.0
1.6
—
—
—
0
0
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.9
—
15.41
—
0
7
0
9
0.00
-0.00
0.0
2.3
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.3
—
—
—
0
0
0
8
0.00
-0.00
0.0
1.4
—
7.91
—
0
8
0
7
0.00
-0.00
0.0
1.3
—
—
—
0
0
0
8
0.00
-0.00
0.0
2.4
—
5.89
—
0
8
0
9
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
8
0.00
-0.00
0.0
2.0
—
9.14
—
0
8
0
9
0.00
-0.00
0.0
1.1
—
—
—
0
0
8
84
0.95
-0.00
1.4
1.3
—
—
—
0
0
0
7
0.00
-0.00
0.0
2.4
—
2.19
—
0
7
0
7
0.00
-0.00
0.0
1.3
—
—
—
0
0

Mortality – FinRegistry

This endpoint is excluded (different definition than used in FinnGen).

Relationships between endpoints

Index endpoint: Q17_OTHER_CONGEN_MALFO_INTEG_WIDE – Other congenital malformations of integument, including avohilmo

GWS hits: -

This endpoint is excluded (different definition than used in FinnGen).