Ectopic testis

Q17_ECTOPIC_TESTIS

No definition available.

Endpoint definition

↥

Report an error or suggest an improvement for this endpoint codes

Endpoint definition steps	FinnGen
Phenotype data	557745
1. Apply sex-specific rule None	557745
2. Check conditions None	557745
3. Check pre-conditions, main-only, mode, registry filters Registry filters: Hospital discharge: ICD-10 — Q55.20 Cause of death: ICD-10 — Q55.20 2 out of 7 registries used, show all original rules.	201
4. Check minimum number of events None	201
5. Include endpoints None	201
6. Filter based on genotype QC (FinnGen only)	171

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

NAME	Q17_ECTOPIC_TESTIS
CONTROL_EXCLUDE
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	Q5520
HD_ICD_9
HD_ICD_8
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	Q5520
COD_ICD_9
COD_ICD_8
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

Similar endpoints

↥

List of similar endpoints to Ectopic testis based on the number of shared cases.

Similar with more cases:

Similar with less cases:

None

Case counts by codes

↥

FinnGen case counts by registry codes:

Upset plot

Full data table

Summary Statistics

↥

-FinRegistry-

This endpoint is excluded (different definition than used in FinnGen).

-FinnGen-

Key figures

	All	Female	Male
Number of individuals	171	-	170
Unadjusted period prevalence (%)	0.08	-	0.08
Median age at first event (years)	7.78	-	7.77

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

CodeWAS

↥

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log₁₀(p-value) ≥ 6.

Matched cohort

Matched cases
195: Matched controls
1950

Code

Vocabulary

Description

Odds Ratio

-log₁₀(p)

N matched cases

N matched controls

Q55.20

ICD-10 Finland

Retractile testis

+∞

274.5

195

Q53.1

ICD-10 Finland

Undescended testicle, unilateral

26.3

61.0

KFH00

NOMESCO Finland

Operation for undescended or ectopic testis

27.9

58.6

KFH10

NOMESCO Finland

Orchiopexy

18.4

19.5

KF8AE

NOMESCO Finland

Ultrasound examination of scrotum

3.6

6.8

Q53.9

ICD-10 Finland

Undescended testicle, unspecified

41.5

6.8

G03GA01

ATC

chorionic gonadotrophin; parenteral

27.7

6.3

LabWAS

↥

N Cases

N Controls

-log₁₀(p)

cases

controls

cases

controls

unit

-log₁₀(p)

N cases

N controls

(40766189) Gliadin peptide IgG Ab [Units/volume] in Serum by Immunoassay

3.00

3.26

1.1

—

13.40

—

(3009214) Lutropin [Units/volume] in Serum or Plasma

150

2.01

2.69

2.0

2.5

4.29

3.77

u/l

0.18

(3001334) Neutrophil cytoplasmic Ab [Units/volume] in Serum

0.00

2.46

0.0

1.1

—

(3023323) Follitropin [Units/volume] in Serum or Plasma

121

2.02

2.32

2.1

2.7

6.69

5.46

iu/l

0.23

(3049804) Myeloperoxidase IgG Ab [Units/volume] in Serum

0.00

2.10

0.0

1.2

—

(3018095) Leukocytes [#/volume] in Urine

558

1.53

2.09

5.0

6.7

12.61

9.38

e6/l

0.23

376

(3022145) Colonoscopy Study observation

2.01

1.87

2.1

1.6

—

(3009261) Glucose [Presence] in Urine by Test strip

603

1.46

1.75

4.0

3.8

0.00

estimate

—

(3044941) Cell count panel - Synovial fluid

3.92

1.72

1.2

1.1

—

(3004716) Salmonella sp identified in Stool by Organism specific culture

1.97

1.71

1.1

1.2

—

(3035350) Ketones [Presence] in Urine by Test strip

596

1.45

1.71

3.9

3.8

0.00

estimate

—

(3002582) Erythrocytes [#/volume] in Urine

490

1.46

1.62

4.3

5.4

7.50

19.77

e6/l

1.48

371

(46235759) Influenza virus B RNA [Presence] in Nasopharynx by NAA with probe detection

3.06

1.59

1.2

2.6

—

(3030467) Casts [#/volume] in Urine by Automated count

456

1.46

1.57

4.0

5.0

0.39

0.17

e6/l

0.32

334

(3026008) Bacteria identified in Urine by Culture

155

1.70

1.56

3.7

2.6

—

(3015736) pH of Urine

524

1.42

1.50

3.8

3.6

6.52

6.23

1.03

224

(3001784) Prostate Specific Ag Free/Prostate specific Ag.total in Serum or Plasma

167

1.64

1.43

4.2

3.4

19.89

22.62

—

(3021601) Nitrite [Presence] in Urine by Test strip

595

1.39

1.40

3.9

3.8

0.00

estimate

—

(3035995) Alkaline phosphatase [Enzymatic activity/volume] in Serum or Plasma

105

896

1.37

1.38

6.4

7.9

123.39

133.07

u/l

0.52

859

(3000494) Fungus identified in Specimen by Culture

156

1.61

1.27

1.2

2.2

—

(3005013) Prostate Specific Ag Free [Mass/volume] in Serum or Plasma

124

1.68

1.26

3.3

2.6

0.52

0.60

ug/l

—

(3023709) Somatotropin [Mass/volume] in Serum or Plasma

2.05

1.25

6.3

6.0

2.11

2.16

ug/l

—

(3044254) Respiratory syncytial virus RNA [Presence] in Specimen by NAA with probe detection

2.67

1.22

1.2

2.3

—

(3022313) Gas panel - Capillary blood

348

1.42

1.22

7.7

9.2

—

(3019150) Specific gravity of Urine by Refractometry

295

1.45

1.21

4.5

3.1

1.02

kg/l

0.27

175

(3021347) Calcium.ionized [Moles/volume] in Serum or Plasma

752

1.34

1.19

11.9

16.9

1.22

mmol/l

0.29

726

(40758897) Direct antiglobulin test.IgG specific reagent [Presence] on Red Blood Cells

0.00

1.16

0.0

5.5

—

(40758895) Direct antiglobulin test.complement C3d specific reagent [Presence] on Red Blood Cells

0.00

1.16

0.0

5.5

—

(3029937) Albumin [Presence] in Urine by Test strip

254

1.46

1.15

4.8

4.0

0.00

0.01

estimate

—

(3000492) Spirometry study

179

0.53

1.12

1.3

1.5

—

(3048689) Calprotectin [Mass/mass] in Stool

341

1.37

1.02

3.2

3.9

117.51

102.44

ug/g

0.16

297

(3029879) Epithelial cells.squamous [#/volume] in Urine by Automated count

315

1.38

1.00

3.4

4.7

1.42

0.38

e6/l

0.78

168

(44816893) Food Allergen Mix 50 (Kiwi+Pineapple+Banana+Mango) IgE Ab [Units/volume] in Serum by Multidisk

2.20

0.98

1.0

0.80

2.69

u/ml

—

(3000093) Morphology [Interpretation] in Blood Narrative

0.00

0.98

0.0

1.2

—

(3051714) Fibrin D-dimer FEU [Mass/volume] in Platelet poor plasma

245

1.42

0.97

3.1

5.1

1.32

1.94

mg/l

0.43

183

(3005702) Mycobacterium sp identified in Specimen by Organism specific culture

0.00

0.97

0.0

1.5

—

(3026782) Osmolality of Urine

299

1.38

0.96

2.3

3.7

545.24

613.00

mosm/kgh2o

0.94

272

(3007853) Bacteria identified in Skin by Aerobe culture

211

1.44

0.95

1.4

2.0

—

(3051651) Icteric interference index of Serum or Plasma

2.18

0.92

5.5

4.9

0.33

0.71

index

—

(3024891) Influenza virus A+B Ag [Presence] in Specimen

103

0.47

0.92

1.2

1.3

—

(3009201) Thyrotropin [Units/volume] in Serum or Plasma

134

1226

1.30

0.91

4.5

3.7

2.02

2.05

mu/l

0.09

126

1163

(3033319) Streptococcus pyogenes Ag [Presence] in Throat

491

0.74

0.88

1.8

2.0

—

(3032080) INR in Blood by Coagulation assay

378

1.32

0.86

5.2

6.8

1.11

1.16

inr

0.59

317

(3030306) Epithelial cells.non-squamous [#/volume] in Urine by Automated count

315

1.34

0.84

3.9

4.3

0.39

0.28

e6/l

0.23

168

(3024561) Albumin [Mass/volume] in Serum or Plasma

529

1.28

0.84

8.0

9.7

38.22

38.03

g/l

0.08

508

(43054914) Glucose tolerance 2 hours panel - Serum or Plasma

1.77

0.83

1.5

1.3

—

(3038177) Helicobacter pylori Ab [Presence] in Serum

0.00

0.79

0.0

1.0

—

(3042111) Morphology [Interpretation] in Bone marrow Narrative

0.00

0.78

0.0

3.1

—

(3028707) Methadone [Presence] in Urine by Screen method

1.58

0.77

1.7

3.1

—

(3019550) Sodium [Moles/volume] in Serum or Plasma

152

1426

1.30

0.77

13.5

17.2

139.41

139.59

mmol/l

0.57

144

1404

(3023103) Potassium [Moles/volume] in Serum or Plasma

152

1427

1.30

0.76

13.6

17.2

3.97

3.98

mmol/l

0.18

142

1394

(3009343) pH of Capillary blood

385

1.29

0.75

8.7

10.1

7.41

0.90

305

(40764999) Glomerular filtration rate [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (CKD-EPI)/1.73 sq M

101

907

1.24

0.74

8.0

9.9

105.52

102.85

ml/min/173m2

0.65

709

(3027231) Wheat IgE Ab [Units/volume] in Serum

1.78

0.72

1.3

1.4

2.91

12.90

u/ml

—

(3040853) Adenovirus DNA [Identifier] in Specimen by NAA with probe detection

1.60

0.70

2.1

2.4

—

(3021879) Hepatitis B virus core Ab [Presence] in Serum

155

0.63

0.69

1.2

1.5

—

(3018418) pH of Serum or Plasma

335

1.28

0.67

2.3

5.4

7.38

7.39

0.14

226

(43055554) Base excess.100% oxygenated [Moles/volume] standard in Capillary blood by calculation

382

1.27

0.67

8.9

9.9

1.28

0.96

mmol/l

0.44

284

(3019900) Cholesterol [Moles/volume] in Serum or Plasma

118

1085

1.22

0.66

3.7

3.8

4.34

4.41

mmol/l

0.39

113

1043

(3008486) Thyroxine (T4) free [Moles/volume] in Serum or Plasma

115

1056

1.22

0.65

4.1

3.3

14.59

14.76

pmol/l

0.32

107

986

(36305247) Microscopic observation [Identifier] in Isolate by Gram stain

1.66

0.63

2.0

1.3

—

(3021513) Carbon dioxide [Partial pressure] in Mixed venous blood

0.00

0.60

0.0

4.2

—

6.38

—

(3038071) Oxygen [Partial pressure] in Mixed venous blood

0.00

0.60

0.0

4.2

—

4.91

—

(3016431) Calcium.ionized [Moles/volume] adjusted to pH 7.4 in Serum or Plasma

782

1.20

0.60

11.0

14.9

1.22

mmol/l

0.17

730

(3004383) Neutrophil cytoplasmic Ab.classic [Titer] in Serum by Immunofluorescence

0.00

0.59

0.0

1.1

—

(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip

372

1.24

0.55

4.4

3.2

0.00

estimate

—

(3023368) Bacteria identified in Blood by Culture

307

1.25

0.55

2.9

5.2

—

(44790048) Parainfluenza type 2 nucleic acid detection

1.50

0.54

2.2

2.3

—

(586526) SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with probe detection

1.50

0.54

1.6

1.5

—

(44790049) Parainfluenza type 3 nucleic acid detection

1.50

0.54

2.2

2.3

—

(44806118) Parainfluenza type 4 nucleic acid detection

1.50

0.54

2.2

2.3

—

(44790047) Parainfluenza type 1 nucleic acid detection

1.50

0.54

2.2

2.3

—

(3015635) Cytomegalovirus IgM Ab [Units/volume] in Serum or Plasma

0.61

0.53

3.0

2.4

—

(3017918) Cytomegalovirus IgG Ab [Titer] in Serum or Plasma

0.60

0.53

3.0

2.3

—

(3015399) Transferrin receptor.soluble [Mass/volume] in Serum or Plasma

341

0.79

0.50

3.0

4.0

2.67

2.49

mg/l

0.26

320

(3030692) Respiratory virus DNA+RNA [Identifier] in Specimen by NAA with probe detection

1.51

0.48

2.1

—

(3021337) Troponin I.cardiac [Mass/volume] in Serum or Plasma

231

0.76

0.48

3.9

4.2

251.97

1244.21

ng/l

1.36

159

(3016251) Hemoglobin.gastrointestinal [Presence] in Stool

1.48

0.47

2.1

3.0

—

(46235355) HIV 1 and 2 tests - Meaningful Use set

332

1.22

0.46

1.5

2.2

—

(3019250) Coagulation factor VIII activity actual/normal in Platelet poor plasma by Coagulation assay

121

1.35

0.46

3.6

7.2

153.13

172.03

0.88

121

(40761511) CBC panel - Blood by Automated count

160

1539

1.22

0.46

10.1

8.9

—

(3006418) Campylobacter sp identified in Tissue by Organism specific culture

1.41

0.45

1.0

—

(3048929) Epstein Barr virus Ab [Presence] in Serum

218

0.76

0.45

2.2

1.9

—

(3014765) Yersinia sp identified in Stool by Organism specific culture

1.39

0.44

1.0

—

(3042194) Human metapneumovirus RNA [Presence] in Specimen by NAA with probe detection

1.43

0.44

2.0

2.3

—

(3035715) Granulocytes [#/volume] in Blood

1.63

0.43

1.4

4.8

4.12

2.93

e9/l

—

(3003694) ABO and Rh group [Type] in Blood

392

1.19

0.43

1.3

1.4

—

(3025023) Rhinovirus RNA [Presence] in Specimen by NAA with probe detection

1.58

0.42

2.0

1.9

—

(3011288) Drugs identified in Urine by Screen method Nominal

150

1.30

0.42

1.9

2.6

—

(1761868) Lipid panel - Serum or Plasma

412

1.19

0.42

2.4

—

(3041672) Baker's yeast Ab [Presence] in Serum

0.00

0.41

0.0

1.3

—

(3009595) Pneumocystis jirovecii DNA [Presence] in Specimen by NAA with probe detection

0.00

0.41

0.0

1.5

—

(3035797) Protein.monoclonal band 2 [Mass/volume] in Serum or Plasma by Electrophoresis

0.00

0.41

0.0

1.2

—

0.00

—

(3019601) Blood group antibody investigation [Interpretation] in Plasma or RBC

0.00

0.41

0.0

4.5

—

(4027681) Cerebrospinal fluid IgG ratio and IgG index

0.00

0.41

0.0

1.2

—

0.59

—

(4024509) Urine culture

0.00

0.41

0.0

1.2

—

(40759812) SCL-70 extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.41

0.0

1.2

—

(3032352) Blasts [#/volume] in Cerebral spinal fluid

0.00

0.41

0.0

9.3

—

(3007302) Hemoglobin [Mass/volume] in Mixed venous blood

0.00

0.41

0.0

2.1

—

99.56

—

(3006922) Hepatitis E virus Ab [Presence] in Serum

0.00

0.41

0.0

1.1

—

(3008092) Baker's yeast IgG Ab [Units/volume] in Serum

0.00

0.41

0.0

1.4

—

17.00

—

(3004593) Baker's yeast IgA Ab [Units/volume] in Serum

0.00

0.41

0.0

1.4

—

34.00

—

(3024474) Albumin [Mass/volume] in Cerebral spinal fluid

0.00

0.41

0.0

1.1

—

262.45

—

(3002482) Mycoplasma pneumoniae DNA [Presence] in Specimen by NAA with probe detection

1.35

0.41

1.4

1.6

—

(3010517) Carboxyhemoglobin/Hemoglobin.total in Venous blood

102

0.67

0.40

25.6

13.1

1.51

1.34

—

102

(3006217) Methemoglobin/Hemoglobin.total in Arterial blood

105

0.65

0.40

13.6

21.7

0.79

0.67

—

105

(40759883) Oligoclonal Bands IgG [Presence] in Cerebral spinal fluid by Isoelectric focusing

0.00

0.40

0.0

1.1

—

(3001079) Blood group antibody screen [Presence] in Serum or Plasma

463

1.17

0.39

3.1

4.2

—

estimate

—

(3017181) Myelocytes/Leukocytes in Blood

116

1.32

0.38

3.1

6.6

0.60

0.78

—

(40760892) CBC W Ordered Manual Differential panel - Blood

283

1.20

0.37

8.3

7.5

—

(3013139) Helicobacter pylori Ag [Presence] in Stool

1.30

0.37

1.2

—

(3044938) Influenza virus A RNA [Presence] in Specimen by NAA with probe detection

218

1.22

0.36

2.0

2.3

—

(3017143) Hepatitis C virus Ab [Presence] in Serum

243

0.80

0.36

1.4

1.7

—

(3031478) Chlamydophila pneumoniae DNA [Presence] in Specimen by NAA with probe detection

1.44

0.36

1.2

1.7

—

(3025839) Triglyceride [Moles/volume] in Serum or Plasma

457

1.16

0.35

1.9

2.1

1.37

1.35

mmol/l

0.05

431

(3041096) Erythrocytes [Presence] in Urine by Automated

268

1.19

0.33

2.0

3.2

0.00

estimate

—

(3012095) Magnesium [Moles/volume] in Serum or Plasma

271

0.83

0.32

12.7

14.7

0.85

0.80

mmol/l

0.31

264

(42529406) Shigella sp [Presence] in Stool by Culture

1.36

0.31

1.0

1.1

—

(3024889) Methemoglobin/Hemoglobin.total in Venous blood

0.70

0.31

25.6

13.4

0.81

0.58

—

(3018251) Fasting glucose [Moles/volume] in Serum or Plasma

102

965

1.12

0.30

3.2

2.9

5.44

5.61

mmol/l

1.34

890

(3007220) Creatine kinase [Enzymatic activity/volume] in Serum or Plasma

271

1.17

0.29

1.8

3.1

224.16

383.23

u/l

0.62

271

(3032773) Endomysium IgG Ab [Titer] in Serum

1.24

0.29

1.0

1.2

—

(3013707) Erythrocyte sedimentation rate [Velocity] in Red Blood Cells by Westergren method

101

957

1.11

0.29

3.9

5.1

5.99

6.87

mm/h

0.62

912

(3014111) Lactate [Moles/volume] in Serum or Plasma

204

0.82

0.28

15.9

18.8

1.31

1.36

mmol/l

0.13

198

(3003510) Neisseria gonorrhoeae DNA [Presence] in Urine by NAA with probe detection

282

1.16

0.28

1.9

2.5

—

(1001926) Buprenorphine [Presence] in Urine by Screen method

178

1.20

0.27

1.6

2.3

—

(3027944) Amphetamines [Presence] in Urine

235

1.17

0.27

1.5

1.9

—

(3020564) Creatinine [Moles/volume] in Serum or Plasma

159

1549

1.14

0.26

11.6

13.8

65.74

67.37

umol/l

0.40

153

1530

(3027008) Opiates [Presence] in Urine

236

1.17

0.26

1.5

2.0

—

(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection

149

1531

0.89

0.25

3.3

3.8

—

(3028300) Cannabinoids [Presence] in Urine

237

1.16

0.25

1.6

2.1

—

(40761536) Microorganisms panel - Urine sediment

1.18

0.24

1.6

3.9

—

(3001308) Cholesterol in LDL [Moles/volume] in Serum or Plasma

113

1084

1.10

0.24

4.1

3.8

2.75

2.72

mmol/l

0.16

108

1036

(3042936) Bacteria identified in Isolate by Culture

181

1.18

0.23

1.9

2.4

—

(3023602) Cholesterol in HDL [Moles/volume] in Serum or Plasma

112

1075

1.10

0.23

3.8

3.7

1.29

1.31

mmol/l

0.27

106

1028

(3008295) Osmolality of Serum or Plasma

1.29

0.23

1.2

1.7

289.40

294.52

mosm/kgh2o

—

(3005757) Coagulation factor V activity actual/normal in Platelet poor plasma by Coagulation assay

1.29

0.23

5.2

5.3

92.80

96.13

—

(3019284) Hepatitis B virus surface Ag [Presence] in Serum

249

1.15

0.22

1.3

1.6

—

(3002148) Methylenedioxymethamphetamine [Presence] in Urine by Screen method

1.23

0.22

1.2

2.0

—

(3036489) Thrombin time

126

1.21

0.21

3.8

7.5

21.93

22.94

0.46

126

(3035637) Corticotropin [Mass/volume] in Plasma

102

0.78

0.21

1.1

1.8

18.25

21.33

ng/l

—

102

(3041082) Glomerular basement membrane Ab [Titer] in Serum by Immunofluorescence

0.00

0.21

0.0

1.8

—

(3045683) HLA typing for celiac disease panel - Blood or Tissue

0.00

0.21

0.0

1.0

—

(3002823) Mycoplasma pneumoniae IgG Ab [Units/volume] in Cerebral spinal fluid

0.00

0.21

0.0

1.2

—

(3040893) Potassium [Moles/volume] in Capillary blood

0.00

0.21

0.0

3.8

—

4.44

—

(40761849) Varicella zoster virus IgG Ab [Units/volume] in Cerebral spinal fluid by Immunoassay

0.00

0.21

0.0

1.2

—

(3005260) Streptococcus pneumoniae Danish serotype 9V IgG Ab [Mass/volume] in Serum

0.00

0.21

0.0

2.4

—

0.49

—

(3044212) Herpes simplex virus 1+2 IgM Ab [Presence] in Cerebral spinal fluid

0.00

0.21

0.0

1.2

—

(3037677) Mycoplasma pneumoniae IgM Ab [Titer] in Cerebral spinal fluid

0.00

0.21

0.0

1.2

—

(3000899) Streptococcus pneumoniae Danish serotype 7F IgG Ab [Mass/volume] in Serum

0.00

0.21

0.0

2.4

—

0.58

—

(3037756) Immunofixation for Serum or Plasma

0.00

0.21

0.0

1.0

—

(3015183) Erythrocyte sedimentation rate [Velocity] in Red Blood Cells

0.00

0.21

0.0

1.1

—

11.60

—

(3011391) Calcitriol [Moles/volume] in Serum or Plasma

0.00

0.21

0.0

1.2

—

99.20

—

(3031072) Herpes simplex virus 1 IgG Ab [Presence] in Cerebral spinal fluid

0.00

0.21

0.0

1.2

—

(3004616) Nuclear Ab [Presence] in Serum

0.00

0.21

0.0

1.0

—

(3014038) Collagen crosslinked N-telopeptide [Moles/volume] in Urine

0.00

0.21

0.0

3.5

—

(3016879) Cocaine [Presence] in Urine

221

1.15

0.21

1.5

2.1

—

(3021236) Streptolysin O Ab [Units/volume] in Serum or Plasma

0.00

0.21

0.0

1.1

—

218.84

—

(3007798) IgG/Albumin [Mass Ratio] in Cerebral spinal fluid

0.00

0.21

0.0

1.1

—

(3043109) Cytology report of Tissue fine needle aspirate Cyto stain

0.00

0.21

0.0

1.0

—

(3019420) Tryptase [Mass/volume] in Serum or Plasma

0.00

0.21

0.0

1.9

—

6.96

—

(3013247) Albumin in CSF/Albumin in Serum or Plasma

0.00

0.21

0.0

1.1

—

7.13

—

(40762119) U1 small nuclear ribonucleoprotein 70kD Ab [Units/volume] in Serum

0.00

0.21

0.0

1.1

—

(42868421) Varicella zoster virus IgM Ab [Presence] in Cerebral spinal fluid by Immunoassay

0.00

0.21

0.0

1.2

—

(37208534) Antinuclear antibody arbitrary concentration in serum

0.00

0.21

0.0

1.3

—

(3013115) Eosinophils [#/volume] in Blood

104

998

1.09

0.21

7.6

13.1

0.24

0.23

e9/l

0.08

825

(3016881) Enterovirus RNA [Presence] in Specimen by NAA with probe detection

1.17

0.21

2.0

1.7

—

(40768795) Lymph node Pathology biopsy report

0.00

0.21

0.0

1.5

—

(3049714) Procollagen type I.N-terminal propeptide [Mass/volume] in Serum

0.00

0.21

0.0

4.5

—

205.84

—

(3018333) Ribosomal P Ab [Presence] in Serum

0.00

0.21

0.0

1.2

—

(3011363) Streptococcus pneumoniae Ag [Presence] in Urine

0.00

0.21

0.0

1.0

—

(42869858) Acute and chronic leukemia fusion transcript panel - Blood or Tissue by Molecular genetics method

0.00

0.21

0.0

1.1

—

(40759849) Smith extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.21

0.0

1.2

—

(40759842) Ribonucleoprotein extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.21

0.0

1.2

—

(40760888) Immunoglobulin light chains.free panel - Serum

0.00

0.21

0.0

4.5

—

(3029338) Protein.monoclonal band 3 [Mass/volume] in Serum or Plasma by Electrophoresis

0.00

0.21

0.0

1.1

—

0.00

—

(40759850) Jo-1 extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.21

0.0

1.2

—

(3012320) Pathologist interpretation of Cerebral spinal fluid tests

0.00

0.21

0.0

1.8

—

(40759844) Sjogrens syndrome-B extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.21

0.0

1.2

—

(40759843) Sjogrens syndrome-A extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.21

0.0

1.2

—

(3029379) Protein.monoclonal band 4 [Mass/volume] in Serum or Plasma by Electrophoresis

0.00

0.21

0.0

1.1

—

0.00

—

(40759836) Histone Ab [Presence] in Serum by Immunoblot

0.00

0.21

0.0

1.2

—

(3023520) Reticulocytes [#/volume] in Blood

176

0.84

0.21

3.1

7.3

55.40

66.62

e9/l

—

112

(3002385) Erythrocyte [DistWidth] in Red Blood Cells

156

1525

1.11

0.20

15.4

19.1

13.30

13.12

1.12

151

1512

(40765161) Human bocavirus DNA [Presence] in Specimen by NAA with probe detection

1.26

0.20

1.8

2.4

—

(3029023) Hepatitis E virus IgG Ab [Presence] in Serum by Immunoassay

0.00

0.20

0.0

1.0

—

(3041806) Other cells [#/volume] in Blood by Manual count

0.00

0.20

0.0

1.6

—

0.44

—

(3002222) Hepatitis E virus IgM Ab [Presence] in Serum

0.00

0.20

0.0

1.0

—

(3004905) Lipase [Enzymatic activity/volume] in Serum or Plasma

0.00

0.20

0.0

2.9

—

28.64

—

(3012447) Hantavirus puumala IgG Ab [Titer] in Serum

0.00

0.20

0.0

1.1

—

(3007164) IgA [Mass/volume] in Serum or Plasma

608

0.91

0.20

1.6

1.9

1.67

1.82

g/l

0.33

314

(3011897) Casein IgE Ab [Units/volume] in Serum

1.23

0.20

1.2

1.8

0.18

4.90

u/ml

—

(3006923) Alanine aminotransferase [Enzymatic activity/volume] in Serum or Plasma

155

1518

1.10

0.18

9.7

11.2

34.00

31.31

u/l

0.51

147

1482

(3005772) Bilirubin.conjugated [Moles/volume] in Serum or Plasma

236

0.88

0.18

9.1

6.8

6.54

8.36

umol/l

0.41

199

(3027545) Mycoplasma pneumoniae Ab [Presence] in Serum by Immunoassay

110

1.19

0.17

1.2

1.3

—

(3024950) Chlamydia trachomatis DNA [Presence] in Urine by NAA with probe detection

302

1.11

0.17

1.9

2.5

—

(3044889) 12 lead EKG panel

685

0.92

0.17

2.5

2.6

—

(3045783) Sodium and Potassium panel [Moles/volume] - Serum or Plasma

1.12

0.17

5.9

4.8

—

(3008364) Apolipoprotein A-I [Mass/volume] in Serum or Plasma

0.73

0.17

1.0

1.45

1.43

g/l

—

(3014791) Apolipoprotein B [Mass/volume] in Serum or Plasma

0.71

0.17

1.0

1.2

0.88

0.92

g/l

—

(3025941) Bacteria identified in Stool by Culture

1.15

0.16

1.1

1.2

—

(3047007) Chlamydophila sp Ab [Presence] in Serum

1.12

0.16

1.1

1.2

—

(3014576) Chloride [Moles/volume] in Serum or Plasma

213

0.88

0.15

13.2

13.8

106.21

104.91

mmol/l

0.94

213

(3023351) European house dust mite IgE Ab [Units/volume] in Serum

192

0.87

0.15

1.5

1.3

6.46

3.34

u/ml

0.31

149

(3043924) Respiratory syncytial virus RNA [Identifier] in Specimen by NAA with probe detection

192

0.87

0.15

2.1

—

(3019050) Tissue transglutaminase IgA Ab [Units/volume] in Serum

641

0.93

0.15

2.1

2.0

2.34

2.88

u/ml

—

117

(3024135) Streptococcus.beta-hemolytic [Presence] in Throat by Organism specific culture

680

0.93

0.14

2.0

—

(3006093) Chlamydia trachomatis DNA [Presence] in Specimen by NAA with probe detection

113

1.16

0.13

2.0

3.0

—

(3003338) MCHC [Entitic Mass/volume] in Red Blood Cells

156

1583

0.93

0.12

15.4

18.1

338.10

337.56

g/l

0.27

156

1569

(40768797) Stomach Pathology biopsy report

114

1.15

0.12

1.6

1.5

—

(3044640) Blood type and Crossmatch panel - Blood

387

1.08

0.12

2.8

4.1

—

(3000515) Antithrombin actual/normal in Platelet poor plasma by Chromogenic method

154

1.11

0.10

5.8

8.8

87.35

90.90

0.19

154

(3013512) EKG study

217

0.91

0.10

2.8

—

(3000991) Gas panel - Venous blood

390

0.94

0.09

11.7

14.2

—

(36031861) Influenza virus A and B and SARS-CoV-2 (COVID-19) and Respiratory syncytial virus RNA panel - Respiratory system specimen by NAA with probe detection

1.16

0.09

1.6

2.0

—

(3026361) Erythrocytes [#/volume] in Blood

178

1795

0.90

0.09

17.6

19.7

4.83

4.80

e12/l

0.47

170

1715

(3042596) Human coronavirus RNA [Presence] in Specimen by NAA with probe detection

1.05

0.08

1.3

2.2

—

(1002224) Polysomnography panel

1.05

0.08

1.2

1.1

—

(3012220) Varicella zoster virus IgM Ab [Presence] in Serum by Immunoassay

0.83

0.08

1.0

1.2

—

(3044290) Cell count panel - Cerebral spinal fluid

0.80

0.08

1.8

5.4

—

(3010813) Leukocytes [#/volume] in Blood

178

1794

0.91

0.08

17.7

19.8

7.02

6.61

e9/l

1.38

170

1712

(3007461) Platelets [#/volume] in Blood

178

1794

0.91

0.08

17.7

19.8

261.77

259.21

e9/l

0.21

170

1719

(3025018) Bordetella pertussis Ab [Titer] in Serum

0.76

0.08

1.4

1.2

—

(3003327) Ova and parasites identified in Stool by Light microscopy

123

0.89

0.08

2.0

1.7

—

(3035933) Granulocytes/Leukocytes in Blood

1.08

0.07

1.4

3.2

58.09

52.47

—

(36033641) SARS-CoV-2 (COVID-19) Ag [Presence] in Upper respiratory specimen by Rapid immunoassay

1.07

0.07

1.4

1.8

—

(3021387) Prolactin [Units/volume] in Serum or Plasma

1.05

0.07

2.0

1.6

253.13

333.23

mu/l

—

(42870588) Differential panel, method unspecified - Blood

769

0.96

0.07

6.4

12.3

—

(3018010) Neutrophils/Leukocytes in Blood

949

0.96

0.07

6.4

12.1

49.14

49.38

0.07

930

(4035726) Immunohistochemistry procedure

0.85

0.07

1.4

2.0

—

(3028653) Carboxyhemoglobin/Hemoglobin.total in Arterial blood

104

0.86

0.06

10.8

21.9

0.69

1.22

—

104

(3007080) Epstein Barr virus nuclear IgG Ab [Units/volume] in Serum

131

0.91

0.06

2.5

2.1

126.80

149.07

u/ml

—

(3002032) Base excess in Venous blood by calculation

406

1.04

0.05

10.1

11.6

1.60

1.12

mmol/l

0.73

342

(3019198) Lymphocytes [#/volume] in Blood

101

995

1.03

0.05

7.5

12.2

2.43

2.30

e9/l

0.47

826

(42868678) Cholesterol non HDL [Moles/volume] in Serum or Plasma

120

1.09

0.05

1.1

1.4

3.56

3.67

mmol/l

—

(3012544) pH of Venous blood

407

1.04

0.05

10.1

11.8

7.37

0.35

274

(3003888) Timothy IgE Ab [Units/volume] in Serum

180

0.94

0.04

1.3

1.2

7.71

7.56

u/ml

0.01

142

(43054903) Holo-transcobalamin II [Moles/volume] in Serum

319

1.04

0.04

2.2

1.7

98.89

101.02

pmol/l

0.09

158

(46236098) ABO and Rh group [Type] in Blood by Confirmatory method

331

0.96

0.04

3.0

4.0

—

(3003031) Transferrin.carbohydrate deficient.disialo/Transferrin.total in Serum or Plasma

230

0.95

0.03

2.3

1.9

1.51

1.41

0.38

206

(40758558) Short blood count panel - Blood

631

0.97

0.03

4.9

9.7

—

(3011371) Neisseria gonorrhoeae DNA [Presence] in Specimen by NAA with probe detection

102

1.08

0.03

1.9

2.9

—

(3019977) pH of Arterial blood

132

1.07

0.02

8.6

21.5

7.40

7.39

—

(40768804) Tissue Pathology biopsy report

309

0.97

0.02

1.5

1.7

—

(3024354) Oxygen [Partial pressure] in Venous blood

399

0.97

0.02

10.5

11.3

5.48

5.25

kpa

0.28

388

(3051552) Clostridioides difficile toxin genes [Presence] in Stool by NAA with probe detection

1.08

0.02

3.2

1.9

—

(3006315) Basophils [#/volume] in Blood

971

1.02

0.02

7.6

12.1

0.04

e9/l

0.38

782

(3021589) Normoblasts [#/volume] in Blood

928

0.98

0.01

9.0

14.1

0.00

e9/l

0.80

691

(3001604) Monocytes [#/volume] in Blood

972

1.02

0.01

7.4

12.1

0.65

0.58

e9/l

1.03

783

(3002256) Pathology report gross observation

116

0.95

0.01

1.2

—

(3019832) Treponema pallidum Ab [Presence] in Serum

144

1.05

0.00

1.6

2.3

—

(21494755) Public health laboratory ask at order entry panel

154

1.04

0.00

1.2

1.3

—

(3008401) Mugwort IgE Ab [Units/volume] in Serum

176

0.96

0.00

1.3

1.96

1.47

u/ml

—

135

(3000924) Streptococcus pyogenes [Presence] in Throat by Organism specific culture

126

1.03

0.00

1.6

1.4

—

(3019800) Troponin T.cardiac [Mass/volume] in Serum or Plasma

266

1.02

0.00

2.5

2.7

15.00

29.71

ng/l

0.78

149

(36660697) Celiac disease serology panel - Serum

286

1.02

0.00

1.4

1.3

—

(3038288) Influenza virus B RNA [Presence] in Specimen by NAA with probe detection

189

1.01

0.00

2.3

2.2

—

(3009508) Creatinine [Moles/volume] in Urine

469

1.00

0.00

4.6

8.70

9.14

mmol/l

0.19

449

(3020460) C reactive protein [Mass/volume] in Serum or Plasma

157

1573

0.99

0.00

11.7

13.4

28.53

25.25

mg/l

0.53

115

1088

(3013650) Neutrophils [#/volume] in Blood by Automated count

103

1035

0.99

0.00

8.7

14.5

3.93

3.42

e9/l

1.31

838

(3000764) Benzodiazepines [Presence] in Urine

235

1.02

0.00

1.6

2.1

—

(3020682) Albumin/Creatinine [Ratio] in Urine

205

1.03

0.00

3.0

4.7

1.41

75.50

mg/mmol

0.54

159

(43534045) MCM6 gene c.-13910C>T and -13915T>G [Identifier] in Blood or Tissue by Molecular genetics method Nominal

202

0.99

0.00

1.1

—

(3037875) Bordetella parapertussis DNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

2.8

—

(3006442) Creatine [Moles/volume] in Serum or Plasma

0.00

0.0

1.2

—

77.50

—

(3020047) Haemophilus influenzae B Ab [Mass/volume] in Serum

0.00

0.0

1.7

—

3.06

—

(3006109) Coagulation factor IX activity actual/normal in Platelet poor plasma by Coagulation assay

0.00

0.0

1.3

—

101.17

—

(3034426) Prothrombin time (PT)

0.00

0.0

1.2

—

26.33

—

(3038702) Sodium [Moles/volume] in Capillary blood

0.00

0.0

3.7

—

139.67

—

(3006653) Thiamine [Moles/volume] in Blood

0.00

0.0

1.3

—

144.50

—

(3022907) Direct antiglobulin test.polyspecific reagent [Presence] on Red Blood Cells

0.00

0.0

2.2

—

(40760512) CD34 cells/cells in Bone marrow

0.00

0.0

2.5

—

(4010399) Spirometry for bronchospasm with prolonged evaluation after bronchodilator

0.89

0.00

2.3

1.9

—

(3032567) Hepatitis B virus DNA [Units/volume] (viral load) in Serum or Plasma by NAA with probe detection

0.00

0.0

1.0

—

(3013201) Beta-2-Microglobulin [Mass/volume] in Serum or Plasma

0.00

-0.00

0.0

3.4

—

2.53

—

(3008536) Aspergillus sp Ab [Presence] in Serum

0.00

-0.00

0.0

2.3

—

(40768806) Pleura Pathology biopsy report

0.00

-0.00

0.0

2.8

—

(3012441) Differential panel - Pleural fluid

0.00

-0.00

0.0

1.9

—

(3010370) Gastrin [Moles/volume] in Serum or Plasma

0.00

-0.00

0.0

2.6

—

30.54

—

(3007695) Herpes simplex virus 2 IgG Ab [Presence] in Cerebral spinal fluid

0.00

-0.00

0.0

1.2

—

(3041067) Sjogrens syndrome-A extractable nuclear 52kD Ab [Units/volume] in Serum

0.00

-0.00

0.0

1.0

—

(3041423) Sjogrens syndrome-A extractable nuclear 60kD Ab [Units/volume] in Serum

0.00

-0.00

0.0

1.0

—

(3022058) Hepatitis B virus DNA [Presence] in Serum or Plasma by NAA with probe detection

0.00

-0.00

0.0

1.4

—

(3030313) Adrenal Ab [Titer] in Serum

0.00

-0.00

0.0

1.9

—

(3034368) Herpes virus 6 IgM Ab [Presence] in Cerebral spinal fluid

0.00

-0.00

0.0

1.2

—

(3042631) Mycobacterium sp identified in Specimen

0.00

-0.00

0.0

13.6

—

(3032699) Streptococcus pneumoniae DNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

2.8

—

(3026515) Parvovirus B19 IgM Ab [Units/volume] in Serum

0.00

-0.00

0.0

1.1

—

(3006270) Folate [Moles/volume] in Blood

0.00

-0.00

0.0

1.2

—

473.60

—

(4038314) Semen analysis, post vasectomy

0.00

-0.00

0.0

1.0

—

(3048402) Erythrocytes [#/area] in Urine sediment by Automated count

0.00

-0.00

0.0

1.4

—

18.43

—

(40761535) Cells panel - Urine sediment

0.91

-0.00

12.6

3.2

—

(3019902) Methicillin resistant Staphylococcus aureus [Presence] in Specimen by Organism specific culture

1.01

-0.00

3.0

2.9

—

(3043257) Herpes virus 6 IgG Ab [Presence] in Cerebral spinal fluid

0.00

-0.00

0.0

1.3

—

(3023659) Complement C1 esterase inhibitor.functional/Complement C1 esterase inhibitor.total in Serum or Plasma

0.00

-0.00

0.0

1.0

—

112.86

—

(3048821) Cortisol [Moles/volume] in Serum or Plasma --post 1 mg dexamethasone PO overnight

0.00

-0.00

0.0

1.1

—

(3023601) Vancomycin resistant enterococcus [Presence] in Specimen by Organism specific culture

0.00

-0.00

0.0

3.4

—

(40764127) Haemophilus influenzae DNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

2.8

—

(3035062) Alkaline phosphatase.liver 1 [Enzymatic activity/volume] in Serum or Plasma

0.00

-0.00

0.0

1.0

—

37.40

—

(40758292) HTLV I+II Ab panel - Serum

0.00

-0.00

0.0

1.4

—

(3024403) Complement+Immunoglobulin [Units/volume] in Red Blood Cells

0.84

-0.00

1.0

4.0

—

(3037551) Cancer Ag 125 [Units/volume] in Serum or Plasma

0.00

-0.00

0.0

3.5

—

20.00

—

(3014148) Varicella zoster virus Ab [Titer] in Serum

0.98

-0.00

1.0

1.2

—

(3015916) Alpha-1-Fetoprotein [Units/volume] in Serum or Plasma

1.02

-0.00

4.8

4.0

2.26

20.47

u/ml

—

(3010838) Calcium [Moles/time] in 24 hour Urine

0.00

-0.00

0.0

2.1

—

4.10

—

(3036185) Alkaline phosphatase.liver 2 [Enzymatic activity/volume] in Serum or Plasma

0.00

-0.00

0.0

1.0

—

2.74

—

Mortality – FinRegistry

↥

This endpoint is excluded (different definition than used in FinnGen).

Relationships between endpoints

↥

Index endpoint: Q17_ECTOPIC_TESTIS – Ectopic testis

GWS hits: -

This endpoint is excluded (different definition than used in FinnGen).

≡ Risteys

R14

FinnGen R13 + FinRegistry

FinnGen R12 + FinRegistry

FinnGen R11 + FinRegistry

FinnGen R10 + FinRegistry

FinnGen R10

FinnGen R9

FinnGen R8

FinnGen R7

FinnGen R6

FinnGen R5

FinnGen R4

FinnGen R3

Ectopic testis

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

1. Apply sex-specific rule

2. Check conditions

3. Check pre-conditions, main-only, mode, registry filters

4. Check minimum number of events

5. Include endpoints

6. Filter based on genotype QC (FinnGen only)

All original rules

Similar endpoints

Case counts by codes

Upset plot

Case counts by code for Ectopic testis (Q17_ECTOPIC_TESTIS)

Summary Statistics

-FinRegistry-

-FinnGen-

Key figures

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

CodeWAS

Matched cohort

LabWAS

Mortality – FinRegistry

Relationships between endpoints