No definition available.
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
519870 |
1. Apply sex-specific ruleNone |
519870 |
2. Check conditionsNone |
519870 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters: 2 out of 7 registries used, show all original rules. |
255 |
4. Check minimum number of eventsNone |
255 |
5. Include endpointsNone |
255 |
6. Filter based on genotype QC (FinnGen only) |
248 |
Control definitions (FinnGen only)
Controls for this endpoint are individuals that are not cases.
Similar endpoints
↥List of similar endpoints to
Cystic disease of liver
based on the number of shared cases.
Similar with more cases:
- Congenital malformations of gallbladder, bile ducts and liver
- Other congenital malformations of the digestive system
- Other congenital malformations of the digestive system, including avohilmo
- Congenital malformations, deformations and chromosomal abnormalities
- Congenital malformations, deformations and chromosomal abnormalities, including avohilmo
Similar with less cases:
None
Case counts by codes
↥Summary Statistics
↥-FinRegistry-
This endpoint is excluded (different definition than used in FinnGen).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 248 | 178 | 70 |
| Unadjusted period prevalence (%) | 0.05 | 0.06 | 0.03 |
| Median age at first event (years) | 57.23 | 55.23 | 62.30 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 255
- Matched controls
- 2550
TimeCodeWAS
↥TODO / Current known limitations:
- Only showing the top 500 codes, because showing all (sometimes 20k) makes the page too slow.
- Legend / how to read the glyphs.
- Proper column names.
- Show details (e.g. Fisher or Chi-square test, N cases and N controls) when clicking on a row.
- Explanation on the underlying data / how the TimeCodeWAS is done (e.g. matched cases / controls, eligibility).
- Download CSV not working.
- No filters and sorters.
- Limited amount of endpoints with TimeCodeWAS data.
- Cross-links to Risteys lab test pages for lab test codes.
Q44.6 (45553680)
K76.80 (2000502934)
JJ5KT (2001305263)
Q61.3 (45592380)
19176-7 (3015916)
50373000 (4177340)
60621009 (4245997)
GD1AA (2001303617)
JN1AE (2001305517)
JN3AE (2001305555)
SMOKING-2-3-0 (2002330113)
29760-6 (3005772)
14338-8 (3013742)
1798-8 (3016771)
2600-5 (3021197)
5894-1 (3033658)
10 (38004455)
106 (44777669)
Q61.2 (45558415)
Z94.0 (45566477)
R10.4 (45568113)
21 (8717)
22 (8756)
39 (38004479)
22664-7 (3020779)
L04AA06 (21603896)
1751-7 (3024561)
6768-6 (3035995)
3034-6 (3004789)
14879-1 (3003458)
33863-2 (3030366)
14631-6 (3006140)
OP (9202)
2753-2 (3018418)
24108-3 (3022914)
1995-0 (3021347)
60517-0 (40763571)
1920-8 (3013721)
19072-8 (3016431)
14749-6 (3013826)
2324-2 (3026910)
14798-3 (3022948)
34714-6 (3032080)
2731-8 (3000067)
24339-4 (3000991)
30385-9 (3002385)
2 (38004447)
14682-9 (3020564)
11 (38004456)
OMOP5117446 (33004)
1927-3 (3002032)
26515-7 (3007461)
30428-7 (3024731)
26453-1 (3026361)
28539-5 (3035941)
30391-7 (3002582)
718-7 (3000963)
26464-8 (3010813)
20570-8 (3009542)
50554-5 (3029287)
58410-2 (40761511)
2746-6 (3012544)
2021-4 (3021447)
14804-9 (3022250)
R10.1 (45568111)
ER (9203)
16128-1 (3017143)
30405-5 (3018095)
5195-3 (3019284)
890-4 (3001079)
1988-5 (3020460)
87829-8 (36304419)
51483-6 (3030467)
OMOP4822461 (32036)
72493-0 (43055120)
251B00000X (38004193)
43409-2 (3042936)
2951-2 (3019550)
2823-3 (3023103)
28540-3 (3003338)
62238-1 (40764999)
1742-6 (3006923)
ANTIHYPERTENSIVE_DRUG-1 (2002330215)
LabWAS
↥Mortality – FinRegistry
↥This endpoint is excluded (different definition than used in FinnGen).
Relationships between endpoints
↥Index endpoint: Q17_CYSTIC_DISEASE_OF_LIVER – Cystic disease of liver
GWS hits: 12
This endpoint is excluded (different definition than used in FinnGen).