No definition available.
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
519870 |
1. Apply sex-specific ruleNone |
519870 |
2. Check conditionsNone |
519870 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
3 out of 7 registries used, show all original rules. |
190 |
4. Check minimum number of eventsNone |
190 |
5. Include endpointsNone |
190 |
6. Filter based on genotype QC (FinnGen only) |
184 |
Control definitions (FinnGen only)
- Control exclude
- E4_METABOLIA
Extra metadata
- Level in the ICD hierarchy
- 4
- First used in FinnGen datafreeze
- DF2
- Parent code in ICD-10
- E83
- Name in latin
- Perturbationes metabolismi phosphori
Similar endpoints
↥List of similar endpoints to
Disorders of phosphorus metabolism and phosphatases
based on the number of shared cases.
Similar with more cases:
- Disorders of mineral metabolism
- Metabolic disorders
- Endocrine, nutritional and metabolic diseases
- Any prescribed medicine buy
- Any event in hilmo or specialist outpatient
Similar with less cases:
None
Case counts by codes
↥Summary Statistics
↥-FinRegistry-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | |||
| Whole population | 908 | 443 | 459 |
| Only index persons | 819 | 399 | 420 |
| Unadjusted period prevalence (%) | |||
| Whole population | 0.01 | 0.01 | 0.01 |
| Only index persons | 0.02 | 0.01 | 0.02 |
| Median age at first event (years) | |||
| Whole population | 54.06 | 52.80 | 55.17 |
| Only index persons | 54.59 | 53.52 | 55.61 |
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 184 | 96 | 88 |
| Unadjusted period prevalence (%) | 0.04 | 0.03 | 0.04 |
| Median age at first event (years) | 53.84 | 50.34 | 57.66 |
-FinRegistry-
Age distribution of first events
-FinnGen-
Age distribution of first events
-FinRegistry-
Year distribution of first events
-FinnGen-
Year distribution of first events
-FinRegistry-
Cumulative Incidence Function
-FinnGen-
Cumulative Incidence Function
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 190
- Matched controls
- 1900
TimeCodeWAS
↥TODO / Current known limitations:
- Only showing the top 500 codes, because showing all (sometimes 20k) makes the page too slow.
- Legend / how to read the glyphs.
- Proper column names.
- Show details (e.g. Fisher or Chi-square test, N cases and N controls) when clicking on a row.
- Explanation on the underlying data / how the TimeCodeWAS is done (e.g. matched cases / controls, eligibility).
- Download CSV not working.
- No filters and sorters.
- Limited amount of endpoints with TimeCodeWAS data.
- Cross-links to Risteys lab test pages for lab test codes.
E83.39 (2000501534)
E87.6 (45537991)
E83.3 (45542777)
E87.1 (45542779)
E83.4 (45595835)
E83.30 (2000501533)
E83.51 (2000501538)
54067-4 (3051552)
50373000 (4177340)
60621009 (4245997)
F10.1 (45595844)
GD1AA (2001303617)
123 (2001600122)
14879-1 (3003458)
2157-6 (3007220)
7974-9 (3008909)
25428-4 (3009261)
2601-3 (3012095)
751-8 (3013650)
14338-8 (3013742)
2524-7 (3014111)
2753-2 (3018418)
6598-7 (3019800)
22664-7 (3020779)
5802-4 (3021601)
600-7 (3023368)
14196-0 (3023520)
630-4 (3026008)
2514-8 (3035350)
24357-6 (3037467)
47598-8 (3048816)
46 (38004485)
57782-5 (40760892)
68438-1 (40771025)
21 (8717)
22 (8756)
IP (9201)
1995-0 (3021347)
19072-8 (3016431)
11 (38004456)
1988-5 (3020460)
1751-7 (3024561)
ERIP (262)
2951-2 (3019550)
2823-3 (3023103)
A12BA01 (21600877)
2000-8 (3015377)
62238-1 (40764999)
OP (9202)
14631-6 (3006140)
58410-2 (40761511)
14749-6 (3013826)
14682-9 (3020564)
30385-9 (3002385)
50554-5 (3029287)
28539-5 (3035941)
20570-8 (3009542)
26453-1 (3026361)
718-7 (3000963)
30428-7 (3024731)
26515-7 (3007461)
1742-6 (3006923)
26464-8 (3010813)
34714-6 (3032080)
6768-6 (3035995)
ER (9203)
69738-3 (42870588)
26485-3 (3019069)
26450-7 (3006504)
30180-4 (3022096)
26484-6 (3001604)
26444-0 (3006315)
26478-8 (3002030)
106 (44777669)
26449-9 (3013115)
A12AA20 (21600872)
30391-7 (3002582)
26511-6 (3018010)
26474-7 (3019198)
1 (38004446)
2731-8 (3000067)
2276-4 (3001122)
1920-8 (3013721)
2324-2 (3026910)
93 (38004510)
OMOP4822461 (32036)
715-3 (3021589)
51480-2 (3031040)
4537-7 (3013707)
1798-8 (3016771)
C03CA01 (21601518)
60517-0 (40763571)
3034-6 (3004789)
4679-7 (3027945)
28540-3 (3003338)
OMOP4822462 (581458)
14798-3 (3022948)
251B00000X (38004193)
A11CC03 (21600818)
I10 (45591453)
A02BC02 (21600097)
87829-8 (36304419)
OMOP5117446 (33004)
3016-3 (3009201)
N02BE01 (21604344)
LabWAS
↥Mortality – FinRegistry
↥Association
Association between endpoint E4_PHOS_MET and mortality.
Females
| Parameter | HR [95% CI] | p-value |
|---|---|---|
| E4_PHOS_MET | 4.82 [3.0, 7.74] | < 0.001 |
| Birth year | 0.995 [0.99, 1.0] | 0.274 |
During the follow-up period (1.1.1998 — 31.12.2019), 78 out of 333 females with E4_PHOS_MET died.
Males
| Parameter | HR [95% CI] | p-value |
|---|---|---|
| E4_PHOS_MET | 3.918 [2.62, 5.86] | < 0.001 |
| Birth year | 0.991 [0.98, 1.0] | 0.048 |
During the follow-up period (1.1.1998 — 31.12.2019), 99 out of 326 males with E4_PHOS_MET died.
Mortality risk
Mortality risk for people of age
years, who have E4_PHOS_MET.| N-year risk | Females | Males |
|---|---|---|
| 1 | 0.415% | 0.867% |
| 5 | 2.335% | 4.788% |
| 10 | 6.908% | 11.571% |
| 15 | 13.29% | 21.978% |
| 20 | 22.891% | 36.068% |
Relationships between endpoints
↥Index endpoint: E4_PHOS_MET – Disorders of phosphorus metabolism and phosphatases
GWS hits: -