No definition available.
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
519870 |
1. Apply sex-specific ruleNone |
519870 |
2. Check conditionsNone |
519870 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
2 out of 7 registries used, show all original rules. |
395 |
4. Check minimum number of eventsNone |
395 |
5. Include endpointsNone |
395 |
6. Filter based on genotype QC (FinnGen only) |
383 |
Control definitions (FinnGen only)
Controls for this endpoint are individuals that are not cases.
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF2
- Parent code in ICD-10
- D32
- Name in latin
- Neoplasma benignum meningum spinalium
Summary Statistics
↥-FinRegistry-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | |||
| Whole population | 2153 | 1510 | 634 |
| Only index persons | 1841 | 1306 | 535 |
| Unadjusted period prevalence (%) | |||
| Whole population | 0.04 | 0.04 | 0.02 |
| Only index persons | 0.04 | 0.05 | 0.02 |
| Median age at first event (years) | |||
| Whole population | 62.54 | 63.92 | 59.41 |
| Only index persons | 61.91 | 63.16 | 58.86 |
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 383 | 280 | 103 |
| Unadjusted period prevalence (%) | 0.09 | 0.10 | 0.05 |
| Median age at first event (years) | 62.99 | 62.93 | 63.13 |
-FinRegistry-
Age distribution of first events
-FinnGen-
Age distribution of first events
-FinRegistry-
Year distribution of first events
-FinnGen-
Year distribution of first events
-FinRegistry-
Cumulative Incidence Function
-FinnGen-
Cumulative Incidence Function
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 395
- Matched controls
- 3950
TimeCodeWAS
↥TODO / Current known limitations:
- Only showing the top 500 codes, because showing all (sometimes 20k) makes the page too slow.
- Legend / how to read the glyphs.
- Proper column names.
- Show details (e.g. Fisher or Chi-square test, N cases and N controls) when clicking on a row.
- Explanation on the underlying data / how the TimeCodeWAS is done (e.g. matched cases / controls, eligibility).
- Download CSV not working.
- No filters and sorters.
- Limited amount of endpoints with TimeCodeWAS data.
- Cross-links to Risteys lab test pages for lab test codes.
ABB00 (2001300450)
9530/0-C70.1 (44500955)
D32.01 (2000501308)
D32.1 (45576389)
D32.00 (2000501307)
NA2CG (2001307017)
AAB00 (2001300256)
SMOKING-2-3-0 (2002330113)
50373000 (4177340)
60621009 (4245997)
2254A (2000402130)
D33.45 (2000501340)
G99.2*D32.1 (2000503905)
NA2BG (2001307013)
ZXM10 (2001311446)
9530/0-C70.9 (44498989)
2312 (2000100265)
AA1CG (2001300116)
R4110 (2001310233)
WX402 (2001310806)
WX408 (2001310808)
WX700 (2001310817)
ZXE10 (2001311401)
ZXE20 (2001311408)
Z3226 (2001311560)
14749-6 (3013826)
5894-1 (3033658)
34531-4 (3044640)
261QX0200X (38004268)
13 (38004458)
25 (38004468)
34 (38004474)
8000/0-C70.1 (44503436)
I10 (45591453)
77397-8 (46236098)
OMOP4822458 (581477)
14 (38004459)
OP (9202)
ZXD10 (2001311387)
N02BF02 (955152)
22 (8756)
N02AX02 (21604298)
21 (8717)
IP (9201)
2157-6 (3007220)
N02BF01 (955005)
1988-5 (3020460)
2951-2 (3019550)
2823-3 (3023103)
14682-9 (3020564)
OMOP5117446 (33004)
62238-1 (40764999)
N06AA09 (21604696)
26515-7 (3007461)
890-4 (3001079)
28539-5 (3035941)
30428-7 (3024731)
26453-1 (3026361)
26464-8 (3010813)
718-7 (3000963)
20570-8 (3009542)
ER (9203)
66121-5 (40768804)
L28 (2002000647)
2 (38004447)
1995-0 (3021347)
30385-9 (3002385)
M03BX02 (21604116)
19072-8 (3016431)
50554-5 (3029287)
WX110 (2001310767)
OMOP4822461 (32036)
SPAT1223 (2001700324)
251B00000X (38004193)
N02BE01 (21604344)
S18 (2002000983)
2744-1 (3019977)
2703-7 (3027801)
2019-8 (3027946)
44856007 (4261340)
1925-7 (3003396)
R02AX02 (1588667)
M01AE01 (21603967)
34534-8 (3044889)
4537-7 (3013707)
58410-2 (40761511)
28540-3 (3003338)
LabWAS
↥Mortality – FinRegistry
↥Association
Association between endpoint CD2_BENIGN_MENINGES_SPINAL and mortality.
Females
| Parameter | HR [95% CI] | p-value |
|---|---|---|
| CD2_BENIGN_MENINGES_SPINAL | 1.32 [1.11, 1.57] | 0.002 |
| Birth year | 0.995 [0.99, 1.0] | 0.287 |
During the follow-up period (1.1.1998 — 31.12.2019), 262 out of 1097 females with CD2_BENIGN_MENINGES_SPINAL died.
Males
| Parameter | HR [95% CI] | p-value |
|---|---|---|
| CD2_BENIGN_MENINGES_SPINAL | 1.558 [1.19, 2.03] | 0.001 |
| Birth year | 0.986 [0.98, 1.0] | 0.006 |
During the follow-up period (1.1.1998 — 31.12.2019), 132 out of 448 males with CD2_BENIGN_MENINGES_SPINAL died.
Mortality risk
Mortality risk for people of age
years, who have CD2_BENIGN_MENINGES_SPINAL.| N-year risk | Females | Males |
|---|---|---|
| 1 | 0.099% | 0.339% |
| 5 | 0.788% | 1.945% |
| 10 | 2.149% | 4.442% |
| 15 | 3.812% | 8.205% |
| 20 | 6.545% | 13.631% |
Relationships between endpoints
↥Index endpoint: CD2_BENIGN_MENINGES_SPINAL – Benign neoplasm: Spinal meninges
GWS hits: -