Chromomycosis and phaeomycotic abscess, including avohilmo

AB1_CHROMOMYCOCIS_WIDE

No definition available.

Endpoint definition

↥

Report an error or suggest an improvement for this endpoint codes

Endpoint definition steps	FinnGen
Phenotype data	557745
1. Apply sex-specific rule None	557745
2. Check conditions None	557745
3. Check pre-conditions, main-only, mode, registry filters Registry filters: Primary healthcare outpatient: ICD-10 — B43 Hospital discharge: ICD-10 — B43 Hospital discharge: ICD-9 — 1172 Hospital discharge: ICD-8 — 1172 Cause of death: ICD-10 — B43 Cause of death: ICD-9 — 1172 Cause of death: ICD-8 — 1172 3 out of 7 registries used, show all original rules.	165
4. Check minimum number of events None	165
5. Include endpoints None	165
6. Filter based on genotype QC (FinnGen only)	144

Control definitions (FinnGen only)

Control exclude: AB1_MYCOSES

Extra metadata

Level in the ICD hierarchy: 3
First used in FinnGen datafreeze: DF13

NAME	AB1_CHROMOMYCOCIS_WIDE
CONTROL_EXCLUDE	AB1_MYCOSES
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD	B43
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	B43
HD_ICD_9	1172
HD_ICD_8	1172
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	B43
COD_ICD_9	1172
COD_ICD_8	1172
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

Similar endpoints

↥

List of similar endpoints to Chromomycosis and phaeomycotic abscess, including avohilmo based on the number of shared cases.

Similar with more cases:

Similar with less cases:

Chromomycosis and phaeomycotic abscess

Case counts by codes

↥

FinnGen case counts by registry codes:

Upset plot

Full data table

Summary Statistics

↥

-FinRegistry-

This endpoint is excluded (different definition than used in FinnGen).

-FinnGen-

Key figures

	All	Female	Male
Number of individuals	144	89	55
Unadjusted period prevalence (%)	0.03	0.03	0.03
Median age at first event (years)	54.62	50.12	61.90

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

No data

CodeWAS

↥

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log₁₀(p-value) ≥ 6.

Matched cohort

Matched cases
153: Matched controls
1530

Code

Vocabulary

Description

Odds Ratio

-log₁₀(p)

N matched cases

N matched controls

B43.2

ICD-10 Finland

Subcutaneous phaeomycotic abscess and cyst

+∞

179.6

135

S10

ICPC

Boil/carbuncle

9.7

29.5

L02.2

ICD-10 Finland

Cutaneous abscess, furuncle and carbuncle of trunk

9.8

19.9

L72.1

ICD-10 Finland

Trichilemmal cyst

7.1

16.7

B43.9

ICD-10 Finland

Chromomycosis, unspecified

+∞

12.7

R22.1

ICD-10 Finland

Localized swelling, mass and lump, neck

9.7

9.6

R4110

NOMESCO Finland

Physiotherapy

2.9

8.6

261

A97

ICPC

No disease

2.9

7.8

210

L02.4

ICD-10 Finland

Cutaneous abscess, furuncle and carbuncle of limb

7.1

7.7

J01FF01

ATC

clindamycin; systemic

2.7

7.4

257

ZXE10

NOMESCO Finland

More than one and less than three hours

2.5

6.8

351

J01DB01

ATC

cefalexin; oral

4.4

6.6

141

1112

NH3AA

NOMESCO Finland

Foot and toes X-ray examination

3.8

6.6

LabWAS

↥

N Cases

N Controls

-log₁₀(p)

cases

controls

cases

controls

unit

-log₁₀(p)

N cases

N controls

(3000991) Gas panel - Venous blood

104

3.34

7.24

7.0

9.5

—

(42870588) Differential panel, method unspecified - Blood

438

2.40

6.54

9.2

6.0

—

(3029879) Epithelial cells.squamous [#/volume] in Urine by Automated count

215

2.55

6.01

4.2

3.0

0.67

2.48

e6/l

2.12

109

(3042936) Bacteria identified in Isolate by Culture

197

2.56

5.81

2.0

2.1

—

(3002582) Erythrocytes [#/volume] in Urine

465

2.26

5.75

4.2

3.0

39.30

52.73

e6/l

0.20

360

(3030467) Casts [#/volume] in Urine by Automated count

398

2.28

5.72

4.1

2.9

0.22

0.26

e6/l

0.11

292

(3022145) Colonoscopy Study observation

139

2.75

5.63

1.5

1.3

—

(3030306) Epithelial cells.non-squamous [#/volume] in Urine by Automated count

243

2.42

5.62

3.8

2.8

0.44

1.05

e6/l

1.30

136

(3018095) Leukocytes [#/volume] in Urine

521

2.24

5.62

5.3

3.7

64.42

77.27

e6/l

0.12

374

(40768804) Tissue Pathology biopsy report

539

2.18

5.29

2.4

2.0

—

(3007853) Bacteria identified in Skin by Aerobe culture

152

2.49

4.67

1.8

1.7

—

(3051552) Clostridioides difficile toxin genes [Presence] in Stool by NAA with probe detection

2.90

4.65

1.6

1.4

—

(3018418) pH of Serum or Plasma

390

2.05

4.34

4.6

4.0

7.39

7.40

0.38

276

(3021589) Normoblasts [#/volume] in Blood

636

2.01

4.24

12.3

10.8

0.00

e9/l

0.46

521

(3006217) Methemoglobin/Hemoglobin.total in Arterial blood

2.92

4.18

8.3

9.5

0.51

0.66

1.08

(3014007) Fractional oxyhemoglobin in Arterial blood

2.92

4.18

8.4

9.7

94.59

94.63

0.02

(3016293) Bicarbonate [Moles/volume] in Serum or Plasma

2.85

4.18

5.1

9.9

24.40

25.01

mmol/l

0.28

(3026389) Candida sp identified in Specimen by Organism specific culture

10.40

4.05

1.9

1.0

—

(3021337) Troponin I.cardiac [Mass/volume] in Serum or Plasma

236

2.14

4.03

5.0

3.6

418.17

133.49

ng/l

0.61

168

(3028653) Carboxyhemoglobin/Hemoglobin.total in Arterial blood

2.84

3.99

8.4

9.4

1.52

1.33

0.34

(3019977) pH of Arterial blood

127

2.37

3.63

7.0

8.1

7.41

7.42

—

(40758558) Short blood count panel - Blood

417

1.87

3.40

9.1

6.3

—

(3021879) Hepatitis B virus core Ab [Presence] in Serum

124

2.32

3.38

1.9

1.5

—

(3035715) Granulocytes [#/volume] in Blood

4.38

3.26

2.9

2.7

4.31

5.15

e9/l

—

(21494815) CD4 cells/Lymphocytes in Specimen

6.61

3.22

3.4

2.3

28.61

34.95

—

(3014576) Chloride [Moles/volume] in Serum or Plasma

170

2.12

3.22

7.4

7.8

105.22

104.11

mmol/l

0.60

170

(3038288) Influenza virus B RNA [Presence] in Specimen by NAA with probe detection

149

2.17

3.17

2.9

1.8

—

(3043924) Respiratory syncytial virus RNA [Identifier] in Specimen by NAA with probe detection

157

2.13

3.13

2.7

1.7

—

(3003327) Ova and parasites identified in Stool by Light microscopy

3.06

3.11

1.7

1.4

—

(3014162) Mycobacterium tuberculosis DNA [Presence] in Specimen by NAA with probe detection

3.06

3.11

1.3

2.8

—

(3005702) Mycobacterium sp identified in Specimen by Organism specific culture

4.04

3.04

1.2

1.5

—

(3007628) Bicarbonate [Moles/volume] standard in Venous blood

2.55

3.02

2.8

5.9

23.39

24.11

mmol/l

0.40

(40758897) Direct antiglobulin test.IgG specific reagent [Presence] on Red Blood Cells

10.27

3.00

1.0

3.0

—

(40758895) Direct antiglobulin test.complement C3d specific reagent [Presence] on Red Blood Cells

10.27

3.00

1.0

3.0

—

(3011648) Oxygen content in Venous blood

5.58

2.90

1.6

12.5

14.59

11.35

—

(3001604) Monocytes [#/volume] in Blood

691

1.73

2.78

10.2

6.3

0.59

0.54

e9/l

0.84

592

(3037522) Nuclear Ab [Titer] in Serum

195

1.96

2.77

1.3

1.4

857.14

522.00

titre

—

(3035933) Granulocytes/Leukocytes in Blood

3.31

2.70

2.8

2.2

57.18

60.50

0.43

(3006315) Basophils [#/volume] in Blood

696

1.71

2.66

10.2

6.3

0.04

e9/l

0.71

592

(3002385) Erythrocyte [DistWidth] in Red Blood Cells

133

1157

2.14

2.64

28.5

17.3

13.66

13.46

1.24

133

1151

(3013650) Neutrophils [#/volume] in Blood by Automated count

789

1.72

2.60

16.0

10.1

4.28

4.02

e9/l

0.33

682

(3045142) Bone marrow Pathology biopsy report

5.63

2.57

2.5

1.2

—

(3007847) Interleukin 2 Receptor Soluble [Units/volume] in Serum or Plasma

7.33

2.57

1.6

2.9

642.40

1031.43

u/ml

—

(3021601) Nitrite [Presence] in Urine by Test strip

721

1.69

2.55

3.8

3.6

0.00

0.01

estimate

0.50

169

(3035350) Ketones [Presence] in Urine by Test strip

722

1.69

2.53

3.8

3.7

0.09

9.39

estimate

0.49

173

(3019198) Lymphocytes [#/volume] in Blood

713

1.68

2.51

10.4

6.3

2.09

2.03

e9/l

0.13

635

(46236098) ABO and Rh group [Type] in Blood by Confirmatory method

327

1.73

2.45

2.5

2.2

—

(3015399) Transferrin receptor.soluble [Mass/volume] in Serum or Plasma

328

1.73

2.42

2.4

2.2

2.80

2.78

mg/l

0.01

279

(3019230) Fractional oxyhemoglobin in Venous blood

3.78

2.40

1.5

8.6

68.75

57.90

—

(21493690) Lymphocyte T-cell and B-cell and Natural killer subsets panel - Blood

6.41

2.39

2.8

2.6

—

(3016431) Calcium.ionized [Moles/volume] adjusted to pH 7.4 in Serum or Plasma

623

1.64

2.34

7.4

7.2

1.21

mmol/l

0.00

538

(3035995) Alkaline phosphatase [Enzymatic activity/volume] in Serum or Plasma

121

1034

1.81

2.34

10.3

7.8

81.79

79.43

u/l

0.12

121

976

(3009261) Glucose [Presence] in Urine by Test strip

731

1.65

2.33

3.9

3.7

0.00

estimate

-0.00

162

(3013527) Hepatitis B virus core IgM Ab [Presence] in Serum

3.07

2.33

1.4

1.2

—

(37019628) Gastrointestinal bacterial pathogens panel - Stool by NAA with probe detection

3.07

2.33

1.2

1.5

—

(3024928) Oxygen saturation in Venous blood

3.61

2.30

1.5

8.5

69.98

57.45

—

(3051714) Fibrin D-dimer FEU [Mass/volume] in Platelet poor plasma

315

1.71

2.30

1.9

1.04

1.13

mg/l

0.09

247

(40768797) Stomach Pathology biopsy report

176

1.88

2.27

1.2

1.3

—

(4094501) Cardiovascular stress test using bicycle ergometer

3.23

2.26

1.0

1.1

—

(3002256) Pathology report gross observation

177

1.86

2.24

1.7

1.2

—

(3049539) Genetic diseases [Identifier] in Blood or Tissue by FISH Nominal

5.70

2.23

1.2

1.0

—

(3015736) pH of Urine

583

1.60

2.17

3.6

3.4

6.03

6.22

0.77

336

(3017143) Hepatitis C virus Ab [Presence] in Serum

187

1.82

2.16

2.2

1.6

—

(3013115) Eosinophils [#/volume] in Blood

720

1.61

2.15

10.7

6.5

0.19

0.18

e9/l

0.18

628

(36305247) Microscopic observation [Identifier] in Isolate by Gram stain

2.62

2.06

1.2

1.6

—

(3023368) Bacteria identified in Blood by Culture

341

1.64

2.06

6.6

4.2

—

(3043362) Influenza virus B Ag [Presence] in Nasopharynx by Immunoassay

3.19

2.04

1.1

1.3

—

(3046524) Influenza virus A Ag [Presence] in Nasopharynx by Immunoassay

3.19

2.04

1.1

1.3

—

(3001122) Ferritin [Mass/volume] in Serum or Plasma

686

1.58

2.04

3.7

3.1

161.71

96.08

ug/l

0.97

649

(3019550) Sodium [Moles/volume] in Serum or Plasma

145

1349

2.43

1.98

21.8

15.6

139.46

139.73

mmol/l

0.64

145

1327

(46237023) Hepatitis B virus core and surface Ab and surface Ag panel - Serum

2.56

1.98

1.6

1.3

—

(3001334) Neutrophil cytoplasmic Ab [Units/volume] in Serum

2.56

1.98

1.2

1.4

—

(3028167) CD3+CD4+ (T4 helper) cells [#/volume] in Blood

4.66

1.95

2.6

1.9

0.47

0.65

e9/l

—

(3000494) Fungus identified in Specimen by Culture

153

1.84

1.95

1.5

1.3

—

(44790047) Parainfluenza type 1 nucleic acid detection

3.28

1.90

1.1

1.8

—

(44806118) Parainfluenza type 4 nucleic acid detection

3.28

1.90

1.1

1.8

—

(3042596) Human coronavirus RNA [Presence] in Specimen by NAA with probe detection

3.28

1.90

1.4

1.1

—

(44790049) Parainfluenza type 3 nucleic acid detection

3.28

1.90

1.1

1.8

—

(44790048) Parainfluenza type 2 nucleic acid detection

3.28

1.90

1.1

1.8

—

(3032080) INR in Blood by Coagulation assay

559

1.54

1.88

11.5

1.15

1.19

inr

0.32

458

(3012544) pH of Venous blood

117

1.92

1.86

2.8

5.2

7.39

—

(3002032) Base excess in Venous blood by calculation

117

1.92

1.86

2.8

5.2

0.09

1.71

mmol/l

0.88

(3021952) Alkaline phosphatase isoenzymes [Enzymatic activity/volume] in Serum or Plasma by Heat stability

4.27

1.84

1.4

—

(3020460) C reactive protein [Mass/volume] in Serum or Plasma

144

1340

2.27

1.76

22.0

13.9

25.55

23.29

mg/l

0.33

128

1070

(4062490) Immunoglobulin typing, IgG

3.94

1.73

1.0

1.2

—

(4035726) Immunohistochemistry procedure

105

1.92

1.72

1.8

1.4

—

(36031861) Influenza virus A and B and SARS-CoV-2 (COVID-19) and Respiratory syncytial virus RNA panel - Respiratory system specimen by NAA with probe detection

2.16

1.65

3.9

1.6

—

(3044640) Blood type and Crossmatch panel - Blood

458

1.51

1.65

3.8

2.2

—

(3049804) Myeloperoxidase IgG Ab [Units/volume] in Serum

2.58

1.62

1.4

1.1

—

(40769539) Bacteria identified based on 16S rRNA gene [Identifier] in Specimen by Sequencing

2.77

1.60

1.9

1.6

—

(3025941) Bacteria identified in Stool by Culture

2.04

1.54

1.2

—

(3028369) Herpes simplex virus 1+2 DNA [Presence] in Specimen by NAA with probe detection

3.41

1.53

1.0

1.3

—

(3044938) Influenza virus A RNA [Presence] in Specimen by NAA with probe detection

209

1.61

1.45

2.8

1.9

—

(3037756) Immunofixation for Serum or Plasma

2.80

1.45

1.0

1.9

—

(3003191) Choriogonadotropin [Presence] in Serum or Plasma

2.09

1.42

1.5

2.2

—

(3045783) Sodium and Potassium panel [Moles/volume] - Serum or Plasma

150

0.44

1.40

5.3

6.6

—

(40768800) Prostate Pathology biopsy report

2.67

1.38

1.0

1.2

—

(40768443) Skin Pathology biopsy report

2.21

1.37

1.2

—

(3042111) Morphology [Interpretation] in Bone marrow Narrative

3.00

1.37

4.4

2.4

—

(3024135) Streptococcus.beta-hemolytic [Presence] in Throat by Organism specific culture

311

1.48

1.30

1.9

1.8

—

(3023419) Bacteria identified in Sputum by Culture

2.84

1.29

2.2

3.0

—

(40764999) Glomerular filtration rate [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (CKD-EPI)/1.73 sq M

137

1273

1.73

1.25

21.1

13.4

88.34

86.33

ml/min/173m2

0.55

127

1171

(36304997) Mycobacterium tuberculosis stimulated gamma interferon release by CD4+ and CD8+ T-cells [Units/volume] in Blood

2.16

1.20

1.1

1.3

—

0.01

—

(43534045) MCM6 gene c.-13910C>T and -13915T>G [Identifier] in Blood or Tissue by Molecular genetics method Nominal

1.80

1.20

1.0

—

(1616796) Gas panel - Central venous blood

2.36

1.20

1.7

2.4

—

(3000492) Spirometry study

143

1.63

1.20

1.4

1.5

—

(40761536) Microorganisms panel - Urine sediment

127

1.66

1.18

4.3

3.0

—

(40761511) CBC panel - Blood by Automated count

145

1384

1.91

1.10

13.3

12.7

—

(3030692) Respiratory virus DNA+RNA [Identifier] in Specimen by NAA with probe detection

2.43

1.10

1.4

1.3

—

(3012516) Albumin [Mass/volume] in Urine

415

1.38

1.06

2.9

3.5

19.98

64.42

mg/l

2.72

265

(3029379) Protein.monoclonal band 4 [Mass/volume] in Serum or Plasma by Electrophoresis

2.11

1.04

1.9

2.4

0.00

g/l

—

(3049717) Cytology report of Urine Cyto stain

1.97

1.04

4.1

2.8

—

(3020059) Calcium [Moles/volume] corrected for albumin in Serum or Plasma

244

1.45

1.03

3.2

2.7

2.42

2.44

mmol/l

0.53

214

(3025839) Triglyceride [Moles/volume] in Serum or Plasma

590

1.34

1.00

2.1

2.0

1.68

1.34

mmol/l

1.21

497

(3013139) Helicobacter pylori Ag [Presence] in Stool

1.68

0.98

1.3

—

(586526) SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with probe detection

1.83

0.97

2.2

1.3

—

(3021387) Prolactin [Units/volume] in Serum or Plasma

1.78

0.95

2.4

1.6

284.58

356.65

mu/l

0.36

(3028707) Methadone [Presence] in Urine by Screen method

1.93

0.95

2.6

1.8

—

(3048929) Epstein Barr virus Ab [Presence] in Serum

1.84

0.90

1.1

1.3

—

(3005013) Prostate Specific Ag Free [Mass/volume] in Serum or Plasma

224

1.42

0.89

4.9

3.0

0.85

0.78

ug/l

0.19

138

(3019902) Methicillin resistant Staphylococcus aureus [Presence] in Specimen by Organism specific culture

130

1.53

0.86

2.3

3.4

—

(3026008) Bacteria identified in Urine by Culture

391

1.33

0.85

3.0

2.7

—

(3022250) Lactate dehydrogenase [Enzymatic activity/volume] in Serum or Plasma by Lactate to pyruvate reaction

140

1.49

0.82

8.3

5.3

261.35

242.79

u/l

0.14

135

(3020682) Albumin/Creatinine [Ratio] in Urine

422

1.31

0.80

3.4

4.3

3.27

11.21

mg/mmol

2.74

261

(3024403) Complement+Immunoglobulin [Units/volume] in Red Blood Cells

1.80

0.77

1.5

2.0

—

(36033641) SARS-CoV-2 (COVID-19) Ag [Presence] in Upper respiratory specimen by Rapid immunoassay

2.12

0.75

1.0

1.5

—

(3001079) Blood group antibody screen [Presence] in Serum or Plasma

659

1.27

0.74

3.8

2.6

—

estimate

—

(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection

101

921

1.28

0.73

4.5

3.5

—

(3013327) Hepatitis A virus IgM Ab [Presence] in Serum

1.95

0.71

1.0

—

(3016650) Hepatitis A virus Ab [Presence] in Serum

1.95

0.71

1.2

1.1

—

(3006418) Campylobacter sp identified in Tissue by Organism specific culture

1.74

0.71

1.0

1.1

—

(40765161) Human bocavirus DNA [Presence] in Specimen by NAA with probe detection

1.88

0.69

1.4

1.6

—

(3014765) Yersinia sp identified in Stool by Organism specific culture

1.66

0.68

1.0

1.1

—

(42529406) Shigella sp [Presence] in Stool by Culture

1.62

0.66

1.0

1.2

—

(3040853) Adenovirus DNA [Identifier] in Specimen by NAA with probe detection

1.62

0.66

1.9

1.7

—

(3009508) Creatinine [Moles/volume] in Urine

462

1.26

0.65

3.0

3.4

7.96

7.98

mmol/l

0.01

401

(3024889) Methemoglobin/Hemoglobin.total in Venous blood

1.63

0.63

1.7

5.3

0.53

0.61

—

(3022914) Cancer Ag 19-9 [Units/volume] in Serum or Plasma

1.67

0.63

1.3

3.6

11.25

1337.21

u/ml

—

(3046870) Tissue transglutaminase IgG Ab [Units/volume] in Serum

1.52

0.63

1.1

1.2

—

(44816559) Phosphatidylethanol [Mass/volume] in Blood

1.57

0.61

2.4

1.4

0.16

0.42

mg/l

—

(3020564) Creatinine [Moles/volume] in Serum or Plasma

146

1419

1.63

0.61

26.0

17.6

71.42

74.57

umol/l

1.24

146

1402

(3009201) Thyrotropin [Units/volume] in Serum or Plasma

131

1248

1.35

0.59

6.6

5.5

1.56

1.88

mu/l

3.13

126

1158

(3034860) Kappa light chains.free [Mass/volume] in Serum

1.69

0.57

1.8

4.5

79.47

44.36

mg/l

—

(3047169) Lambda light chains.free [Mass/volume] in Serum or Plasma

1.69

0.57

1.8

4.5

17.45

25.45

mg/l

—

(3003458) Phosphate [Moles/volume] in Serum or Plasma

169

1.35

0.57

8.7

6.2

1.00

1.06

mmol/l

0.45

153

(3041942) Cyclic citrullinated peptide Ab [Units/volume] in Serum

243

1.29

0.55

1.4

1.3

8.19

9.65

u/ml

0.07

(3023520) Reticulocytes [#/volume] in Blood

117

1.41

0.55

5.6

3.4

71.38

71.84

e9/l

—

(21494755) Public health laboratory ask at order entry panel

157

0.68

0.54

1.1

1.3

—

(3003785) Carcinoembryonic Ag [Mass/volume] in Serum or Plasma

126

1.39

0.54

3.2

4.6

2.50

40.90

ug/l

0.57

101

(3036489) Thrombin time

1.43

0.52

1.8

2.6

19.44

21.22

—

(3008898) HLA-B27 [Presence]

1.43

0.52

1.0

1.1

—

(1761868) Lipid panel - Serum or Plasma

531

1.21

0.52

2.6

3.1

—

(3042194) Human metapneumovirus RNA [Presence] in Specimen by NAA with probe detection

1.58

0.49

1.4

1.6

—

(3024891) Influenza virus A+B Ag [Presence] in Specimen

1.55

0.49

1.0

1.1

—

(3019060) Gas panel - Arterial blood

1.50

0.48

2.0

3.4

—

(3009343) pH of Capillary blood

0.60

0.47

2.6

3.2

7.39

7.41

—

(3043109) Cytology report of Tissue fine needle aspirate Cyto stain

1.63

0.43

2.6

1.2

—

(3002523) Influenza virus A Ag [Presence] in Specimen

1.58

0.42

1.0

1.1

—

(3003740) Influenza virus B Ag [Presence] in Specimen

1.58

0.42

1.0

1.1

—

(4281824) Cell count and differential, peritoneal fluid

0.00

0.41

0.0

1.1

—

(3040359) Human coronavirus NL63 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.41

0.0

1.9

—

(3038546) Human coronavirus OC43 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.41

0.0

1.9

—

(42529200) Cancer Ag 15-3 [Units/volume] in Serum or Plasma by Immunoassay

0.00

0.41

0.0

4.9

—

82.67

—

(3041642) Human coronavirus 229E RNA [Presence] in Specimen by NAA with probe detection

0.00

0.41

0.0

1.9

—

(3004616) Nuclear Ab [Presence] in Serum

0.00

0.41

0.0

1.1

—

(3043405) Microscopic observation [Identifier] in Specimen by Non-gynecological cytology method

0.00

0.41

0.0

1.4

—

(3028271) Lactate [Moles/volume] in Capillary blood

0.00

0.41

0.0

1.6

—

1.75

—

(46236952) Glomerular filtration rate [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (MDRD)/1.73 sq M

106

1.35

0.41

3.5

2.8

69.50

72.49

ml/min/173m2

—

(36660697) Celiac disease serology panel - Serum

133

1.31

0.40

1.2

—

(3043409) Potassium [Moles/volume] in Arterial blood

1.44

0.39

2.8

2.7

4.04

3.87

mmol/l

—

(3031478) Chlamydophila pneumoniae DNA [Presence] in Specimen by NAA with probe detection

1.44

0.39

1.2

1.6

—

(3006923) Alanine aminotransferase [Enzymatic activity/volume] in Serum or Plasma

145

1417

1.45

0.39

15.3

11.3

27.68

26.07

u/l

0.41

145

1386

(3018006) Microscopic observation [Identifier] in Cervix by Cyto stain.thin prep

247

1.21

0.36

1.3

1.5

—

(3007164) IgA [Mass/volume] in Serum or Plasma

324

1.19

0.35

2.2

1.5

2.24

2.30

g/l

0.07

188

(3019284) Hepatitis B virus surface Ag [Presence] in Serum

268

1.20

0.34

1.8

1.7

—

(3013707) Erythrocyte sedimentation rate [Velocity] in Red Blood Cells by Westergren method

107

1020

1.16

0.33

5.3

4.0

11.22

10.08

mm/h

0.55

102

942

(43054903) Holo-transcobalamin II [Moles/volume] in Serum

560

1.15

0.32

2.6

2.0

107.17

97.01

pmol/l

0.96

273

(3003694) ABO and Rh group [Type] in Blood

443

1.16

0.32

1.5

—

(3004716) Salmonella sp identified in Stool by Organism specific culture

1.33

0.31

1.0

1.3

—

(3008364) Apolipoprotein A-I [Mass/volume] in Serum or Plasma

1.29

0.30

1.3

1.1

1.47

1.59

g/l

—

(43054914) Glucose tolerance 2 hours panel - Serum or Plasma

158

1.23

0.30

1.4

1.8

—

(3014791) Apolipoprotein B [Mass/volume] in Serum or Plasma

1.26

0.30

1.3

1.1

0.94

0.85

g/l

—

(3019250) Coagulation factor VIII activity actual/normal in Platelet poor plasma by Coagulation assay

1.26

0.30

1.9

2.9

166.86

182.16

—

(3021614) Rheumatoid factor [Units/volume] in Serum or Plasma

272

1.18

0.29

1.4

1.3

15.96

30.96

iu/ml

1.02

(3048816) Calcium.ionized [Moles/volume] adjusted to pH 7.4 in Blood

1.30

0.29

3.3

4.4

1.25

1.23

mmol/l

0.53

(3004588) Protein electrophoresis panel - Serum or Plasma

1.34

0.29

1.7

3.0

—

(46235355) HIV 1 and 2 tests - Meaningful Use set

331

1.16

0.27

2.2

—

(1002224) Polysomnography panel

1.21

0.25

1.0

1.1

—

(3006093) Chlamydia trachomatis DNA [Presence] in Specimen by NAA with probe detection

133

1.23

0.25

2.8

2.2

—

(3001784) Prostate Specific Ag Free/Prostate specific Ag.total in Serum or Plasma

285

1.16

0.25

5.3

4.5

17.47

21.88

0.99

137

(3010421) pH of Blood

1.36

0.24

1.6

2.9

7.40

7.42

—

(3018405) Lactate [Moles/volume] in Arterial blood

1.33

0.23

2.8

4.6

1.16

1.28

mmol/l

—

(3002482) Mycoplasma pneumoniae DNA [Presence] in Specimen by NAA with probe detection

1.33

0.23

1.2

1.7

—

(3023511) Choriogonadotropin [Units/volume] in Urine

1.20

0.21

1.8

1.2

—

(3003129) Base excess in Capillary blood by calculation

0.00

0.21

0.0

1.4

—

1.51

—

(3011951) Aspergillus fumigatus IgE Ab [Units/volume] in Serum

0.00

0.21

0.0

1.5

—

2.44

—

(3011363) Streptococcus pneumoniae Ag [Presence] in Urine

0.00

0.21

0.0

1.1

—

(3026515) Parvovirus B19 IgM Ab [Units/volume] in Serum

0.00

0.21

0.0

1.2

—

(3005570) Glucose [Moles/volume] in Urine

0.00

0.21

0.0

2.2

—

(3012158) Parainfluenza virus 2 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.8

—

(40770918) von Willebrand factor (vWf).activity actual/normal in Platelet poor plasma by Immunoassay

0.00

0.21

0.0

2.3

—

106.80

—

(3017817) Protein [Mass] in Urine collected for unspecified duration

0.00

0.21

0.0

5.8

—

1229.10

—

(3028433) Virus identified in Specimen by Culture

0.00

0.21

0.0

1.5

—

(3025634) Parainfluenza virus 1 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.8

—

(3038297) Parainfluenza virus 4 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.8

—

(3006262) Parainfluenza virus 3 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.8

—

(3034603) RHD gene allele [Genotype] in Blood or Tissue by Molecular genetics method Nominal

0.00

0.21

0.0

1.2

—

(3022806) Fractional oxyhemoglobin in Capillary blood

0.00

0.21

0.0

1.4

—

92.22

—

(3032773) Endomysium IgG Ab [Titer] in Serum

0.00

0.21

0.0

1.0

—

(40760543) Extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.21

0.0

1.1

—

(3028531) Enolase.neuron specific [Mass/volume] in Serum or Plasma

0.00

0.21

0.0

1.8

—

18.02

—

(3025018) Bordetella pertussis Ab [Titer] in Serum

0.00

0.21

0.0

1.2

—

(3027238) Thyroperoxidase Ab [Units/volume] in Serum or Plasma

108

1.22

0.21

1.2

1.4

45.02

146.59

u/ml

—

(3029937) Albumin [Presence] in Urine by Test strip

427

1.11

0.20

4.2

3.7

0.05

0.01

estimate

0.39

157

(3019309) Folate [Moles/volume] in Red Blood Cells

195

1.15

0.18

1.7

1.6

1220.65

1237.22

nmol/l

0.03

148

(3012336) Haptoglobin [Mass/volume] in Serum or Plasma

1.22

0.18

3.4

2.0

1.15

1.38

g/l

—

(40760892) CBC W Ordered Manual Differential panel - Blood

341

1.11

0.18

7.9

4.9

—

(3001019) Free T4 and TSH panel - Serum or Plasma

0.82

0.15

1.1

1.6

—

(3003510) Neisseria gonorrhoeae DNA [Presence] in Urine by NAA with probe detection

219

0.90

0.12

2.2

2.1

—

(3041096) Erythrocytes [Presence] in Urine by Automated

408

1.07

0.11

3.4

2.7

0.05

0.02

estimate

0.23

144

(3021960) Folate [Moles/volume] in Serum or Plasma

369

1.08

0.11

1.5

1.6

17.05

21.11

nmol/l

1.22

312

(4024509) Urine culture

1.07

0.09

3.2

1.6

—

(3016251) Hemoglobin.gastrointestinal [Presence] in Stool

0.83

0.08

1.4

2.2

—

(3016771) Amylase [Enzymatic activity/volume] in Serum or Plasma

422

1.06

0.08

2.7

2.4

64.68

65.48

u/l

0.02

388

(3016879) Cocaine [Presence] in Urine

1.07

0.07

2.4

1.6

—

(3011371) Neisseria gonorrhoeae DNA [Presence] in Specimen by NAA with probe detection

108

1.12

0.07

3.3

2.0

—

(3000764) Benzodiazepines [Presence] in Urine

1.04

0.07

2.4

1.6

—

(3033319) Streptococcus pyogenes Ag [Presence] in Throat

193

0.92

0.06

1.6

—

(3019800) Troponin T.cardiac [Mass/volume] in Serum or Plasma

484

1.05

0.06

2.5

3.5

42.40

28.60

ng/l

0.33

312

(3017181) Myelocytes/Leukocytes in Blood

119

1.10

0.06

8.5

4.7

1.33

0.80

—

(4010399) Spirometry for bronchospasm with prolonged evaluation after bronchodilator

121

0.90

0.06

1.7

1.3

—

(3026910) Gamma glutamyl transferase [Enzymatic activity/volume] in Serum or Plasma

958

1.03

0.04

3.9

3.2

51.24

43.06

u/l

0.45

910

(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip

568

0.98

0.01

4.2

3.4

0.05

0.02

estimate

0.24

147

(3005785) Creatine kinase.MB [Mass/volume] in Serum or Plasma

1.01

0.00

1.6

2.5

11.26

5.46

ug/l

—

(3019050) Tissue transglutaminase IgA Ab [Units/volume] in Serum

364

0.99

0.00

1.3

1.4

5.15

1.77

u/ml

0.37

(3019150) Specific gravity of Urine by Refractometry

331

1.00

0.00

4.3

3.7

1.02

kg/l

0.42

226

(3009035) Cobalamin (Vitamin B12) [Moles/volume] in Serum or Plasma

237

1.02

0.00

1.8

456.67

470.66

pmol/l

0.16

200

(3019832) Treponema pallidum Ab [Presence] in Serum

185

0.97

0.00

1.4

2.0

—

(3024950) Chlamydia trachomatis DNA [Presence] in Urine by NAA with probe detection

238

1.01

0.00

2.8

2.3

—

(3011547) Coagulation factor VII activity actual/normal in Platelet poor plasma by Coagulation assay

0.00

0.0

1.1

—

118.13

—

(3030136) 5-Hydroxyindoleacetate [Moles/volume] in Serum or Plasma

0.00

0.0

1.6

—

61.13

—

(40765096) Chromosome analysis panel by Banding

0.00

0.0

1.1

—

(3033386) Bacteria [Presence] in Cerebral spinal fluid by Light microscopy

0.00

0.0

1.6

—

(42868414) European tick borne encephalitis virus IgM Ab [Presence] in Serum by Immunoassay

0.00

0.0

1.3

—

(3022575) Varicella zoster virus IgG Ab [Units/volume] in Serum

0.00

0.0

1.0

—

1139.50

—

(3034426) Prothrombin time (PT)

0.00

0.0

1.2

—

28.67

—

(3052649) Adenosine deaminase [Enzymatic activity/volume] in Serum or Plasma

0.00

0.0

2.0

—

14.00

—

(3022058) Hepatitis B virus DNA [Presence] in Serum or Plasma by NAA with probe detection

0.00

-0.00

0.0

1.3

—

(3036185) Alkaline phosphatase.liver 2 [Enzymatic activity/volume] in Serum or Plasma

0.00

-0.00

0.0

1.2

—

6.60

—

(40761849) Varicella zoster virus IgG Ab [Units/volume] in Cerebral spinal fluid by Immunoassay

0.00

-0.00

0.0

1.3

—

(3036035) von Willebrand factor (vWf) Ag actual/normal in Platelet poor plasma by Immunoassay

0.00

-0.00

0.0

3.2

—

123.17

—

(3021197) Magnesium Ionized [Moles/volume] in Serum or Plasma

0.00

-0.00

0.0

1.2

—

0.60

—

(3044242) Glucose [Moles/volume] in Arterial blood

0.00

-0.00

0.0

12.8

—

6.25

—

(40757494) Bilirubin.total [Moles/volume] in Blood

0.00

-0.00

0.0

1.7

—

(3002823) Mycoplasma pneumoniae IgG Ab [Units/volume] in Cerebral spinal fluid

0.00

-0.00

0.0

1.2

—

(1001926) Buprenorphine [Presence] in Urine by Screen method

0.97

-0.00

1.7

1.6

—

(3002619) Bacteria identified in Specimen by Culture

0.00

-0.00

0.0

1.2

—

(3000108) Respiratory syncytial virus B RNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

2.0

—

(3027944) Amphetamines [Presence] in Urine

0.89

-0.00

2.6

1.5

—

(3005156) Respiratory syncytial virus A RNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

2.0

—

(42869457) Rotavirus RNA [Identifier] in Stool by NAA with probe detection

0.00

-0.00

0.0

2.0

—

(3006462) Nitrate [Presence] in Urine

0.00

-0.00

0.0

1.5

—

(3049714) Procollagen type I.N-terminal propeptide [Mass/volume] in Serum

0.00

-0.00

0.0

1.8

—

80.40

—

(3030429) Borrelia sp DNA [Identifier] in Specimen by NAA with probe detection

0.00

-0.00

0.0

1.0

—

(44816893) Food Allergen Mix 50 (Kiwi+Pineapple+Banana+Mango) IgE Ab [Units/volume] in Serum by Multidisk

0.00

-0.00

0.0

1.0

—

0.24

—

(3037677) Mycoplasma pneumoniae IgM Ab [Titer] in Cerebral spinal fluid

0.00

-0.00

0.0

1.3

—

(42868421) Varicella zoster virus IgM Ab [Presence] in Cerebral spinal fluid by Immunoassay

0.00

-0.00

0.0

1.4

—

(3035457) Cefaclor IgE Ab [Units/volume] in Serum

0.00

-0.00

0.0

1.0

—

0.02

—

(3022803) Oxygen [Partial pressure] adjusted to patient's actual temperature in Arterial blood

0.00

-0.00

0.0

3.0

—

10.25

—

(3015076) Soybean IgE Ab [Units/volume] in Serum

0.00

-0.00

0.0

1.0

—

(3027008) Opiates [Presence] in Urine

1.01

-0.00

2.4

1.6

—

(3023365) Varicella zoster virus Ab [Titer] in Cerebral spinal fluid

0.00

-0.00

0.0

1.6

—

(3009306) Alpha-1-Fetoprotein [Mass/volume] in Serum or Plasma

0.00

-0.00

0.0

2.9

—

4.56

—

(3022411) Androstenedione [Moles/volume] in Serum or Plasma

0.00

-0.00

0.0

1.0

—

8.14

—

(42868499) Enterovirus IgG Ab [Presence] in Cerebral spinal fluid by Immunoassay

0.00

-0.00

0.0

1.2

—

(3044212) Herpes simplex virus 1+2 IgM Ab [Presence] in Cerebral spinal fluid

0.00

-0.00

0.0

1.6

—

(37020445) Astrovirus RNA [Presence] in Stool by NAA with probe detection

0.00

-0.00

0.0

2.0

—

(3044927) Protein electrophoresis panel - Urine

0.00

-0.00

0.0

1.0

—

(3020650) Glucose [Presence] in Urine

0.00

-0.00

0.0

1.0

—

0.00

—

(3045156) Carbon dioxide [Partial pressure] adjusted to patient's actual temperature in Arterial blood

0.00

-0.00

0.0

3.0

—

4.58

—

(3028334) Neisseria gonorrhoeae [Presence] in Specimen by Organism specific culture

0.00

-0.00

0.0

1.5

—

(4211845) Urine protein measurement

0.00

-0.00

0.0

1.4

—

(3016724) Homocysteine [Moles/volume] in Serum or Plasma

0.00

-0.00

0.0

1.6

—

9.71

—

(40759883) Oligoclonal Bands IgG [Presence] in Cerebral spinal fluid by Isoelectric focusing

0.00

-0.00

0.0

1.0

—

(37021247) Adenovirus 40+41 DNA [Presence] in Stool by NAA with probe detection

0.00

-0.00

0.0

2.0

—

(42529528) Centromere protein B Ab [Units/volume] in Serum by Line blot

0.00

-0.00

0.0

1.0

—

(3028300) Cannabinoids [Presence] in Urine

1.01

-0.00

2.4

1.6

—

(42868417) European tick borne encephalitis virus IgG Ab [Presence] in Serum by Immunoassay

0.00

-0.00

0.0

1.2

—

(37020957) Sapovirus genogroups I+II+IV+V RNA [Presence] in Stool by NAA with probe detection

0.00

-0.00

0.0

2.0

—

(3016845) Adenovirus Ag [Presence] in Specimen by Immunofluorescence

0.00

-0.00

0.0

1.0

—

(21493195) Respiratory pathogens DNA and RNA tested for in Respiratory system specimen by NAA with probe detection

0.00

-0.00

0.0

2.0

—

Mortality – FinRegistry

↥

This endpoint is excluded (different definition than used in FinnGen).

Relationships between endpoints

↥

Index endpoint: AB1_CHROMOMYCOCIS_WIDE – Chromomycosis and phaeomycotic abscess, including avohilmo

GWS hits: -

This endpoint is excluded (different definition than used in FinnGen).

≡ Risteys

R14

FinnGen R13 + FinRegistry

FinnGen R12 + FinRegistry

FinnGen R11 + FinRegistry

FinnGen R10 + FinRegistry

FinnGen R10

FinnGen R9

FinnGen R8

FinnGen R7

FinnGen R6

FinnGen R5

FinnGen R4

FinnGen R3

Chromomycosis and phaeomycotic abscess, including avohilmo

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

1. Apply sex-specific rule

2. Check conditions

3. Check pre-conditions, main-only, mode, registry filters

4. Check minimum number of events

5. Include endpoints

6. Filter based on genotype QC (FinnGen only)

All original rules

Similar endpoints

Case counts by codes

Upset plot

Case counts by code for Chromomycosis and phaeomycotic abscess, including avohilmo (AB1_CHROMOMYCOCIS_WIDE)

Summary Statistics

-FinRegistry-

-FinnGen-

Key figures

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

CodeWAS

Matched cohort

LabWAS

Mortality – FinRegistry

Relationships between endpoints