No definition available.
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
557745 |
1. Apply sex-specific ruleNone |
557745 |
2. Check conditionsNone |
557745 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
3 out of 7 registries used, show all original rules. |
82 |
4. Check minimum number of eventsNone |
82 |
5. Include endpointsNone |
82 |
6. Filter based on genotype QC (FinnGen only) |
75 |
Control definitions (FinnGen only)
- Control exclude
- AB1_INTESTINAL_INFECTIONS
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF13
Similar endpoints
↥List of similar endpoints to
Cholera, including avohilmo
based on the number of shared cases.
Similar with more cases:
- Intestinal infectious diseases, including avohilmo, including avohilmo
- Certain infectious and parasitic diseases, including avohilmo
- Any prescribed medicine buy
- Any event in hilmo or specialist outpatient
Similar with less cases:
None
Case counts by codes
↥
Summary Statistics
↥-FinRegistry-
This endpoint is excluded (different definition than used in FinnGen).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 75 | 37 | 38 |
| Unadjusted period prevalence (%) | 0.02 | 0.01 | 0.02 |
| Median age at first event (years) | 53.51 | 43.33 | 63.41 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
No data
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 77
- Matched controls
- 770
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
A00.0
ICD-10 Finland
Cholera due to Vibrio cholerae 01, biovar cholerae
+∞
26.6
24
*
A00
ICD-10 Finland
Cholera
+∞
25.4
23
*
A00.9
ICD-10 Finland
Cholera, unspecified
+∞
21.9
20
*
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
40
224
2.64
4.20
5.6
3.2
—
—
—
0
0
34
182
2.55
3.84
5.1
3.0
2.25
0.31
e6/l
0.45
25
125
35
205
2.30
3.11
4.9
3.4
2.31
2.36
mmol/l
1.36
30
186
6
8
8.01
3.11
4.2
1.5
—
—
—
0
0
6
8
8.01
3.11
4.2
1.5
—
—
—
0
0
43
277
2.25
3.02
3.2
2.6
75.33
73.79
nmol/l
0.11
36
252
21
100
2.51
2.93
4.0
3.0
1.89
2.70
e6/l
—
8
43
64
498
2.69
2.77
5.1
4.3
14.99
14.83
pmol/l
0.18
57
454
36
225
2.13
2.64
5.2
3.4
19.77
28.10
ng/l
0.58
22
151
5
8
6.59
2.41
3.4
1.5
—
—
—
0
0
5
8
6.59
2.41
4.8
1.5
—
—
—
0
0
24
132
2.19
2.39
1.7
1.5
1.38
1.44
mg/l
0.03
13
106
27
157
2.11
2.34
4.6
2.2
—
—
—
0
0
21
111
2.23
2.29
3.5
3.0
1.94
0.65
e6/l
—
9
54
13
55
2.64
2.26
3.9
2.9
1.05
0.21
e6/l
0.72
13
49
11
42
2.88
2.25
13.5
10.0
26.46
23.99
mmol/l
0.85
11
42
5
9
5.85
2.25
3.4
1.4
—
—
—
0
0
5
9
5.85
2.25
3.4
1.4
—
—
—
0
0
15
69
2.46
2.22
1.4
1.9
3.92
3.24
ratio
—
10
61
20
106
2.20
2.16
2.7
1.7
—
—
—
0
0
29
179
1.99
2.11
2.6
2.9
1253.71
1310.49
ng/l
0.04
23
147
5
10
5.26
2.10
2.8
1.1
—
—
—
0
0
10
38
2.87
2.09
3.2
1.1
—
—
—
0
0
69
598
2.48
1.89
6.0
5.2
1.90
1.83
mu/l
0.16
64
547
6
17
3.73
1.87
4.3
1.2
—
—
—
0
0
6
17
3.73
1.87
1.5
1.6
—
—
—
0
0
5
12
4.37
1.85
2.2
1.2
—
—
—
0
0
5
12
4.37
1.85
1.0
1.3
—
—
—
0
0
72
640
2.92
1.85
33.9
14.0
33.87
22.60
mg/l
1.52
65
536
15
76
2.21
1.79
2.1
1.7
—
—
—
0
0
14
70
2.22
1.72
19.1
10.5
0.63
0.01
mmol/l
—
9
58
42
309
1.79
1.70
12.4
7.3
1.22
1.21
mmol/l
0.61
35
267
5
14
3.74
1.64
1.2
1.1
—
—
—
0
0
15
79
2.12
1.63
2.1
1.6
—
—
—
0
0
6
20
3.16
1.61
2.0
1.3
—
—
—
0
0
64
545
2.03
1.52
33.3
17.6
13.98
13.59
%
1.32
64
538
11
55
2.17
1.35
1.8
1.9
—
—
—
0
0
11
55
2.17
1.35
15.2
6.7
9.55
9.23
mmol/l
0.05
11
55
10
48
2.25
1.34
1.2
1.3
—
—
—
0
0
16
93
1.91
1.34
3.9
2.9
24.94
24.69
%
0.02
16
87
28
195
1.68
1.30
2.3
2.3
165.39
280.82
u/l
0.62
23
188
11
56
2.13
1.29
15.1
11.6
1.15
1.45
mmol/l
0.48
11
56
29
206
1.65
1.25
6.8
3.8
0.00
0.00
estimate
-0.00
15
75
17
104
1.81
1.22
3.9
2.9
12.72
14.93
umol/l
0.64
17
96
71
645
2.29
1.17
40.8
16.6
3.91
3.98
mmol/l
1.27
71
628
5
20
2.60
1.17
1.0
1.6
0.18
0.24
g/l
—
5
20
5
21
2.47
1.11
1.6
1.4
—
—
—
0
0
5
21
2.47
1.11
1.0
1.5
1.05
1.19
g/l
—
5
21
9
46
2.08
1.08
1.6
1.8
—
—
—
0
0
45
365
1.56
1.08
6.0
3.9
0.13
0.00
estimate
0.48
15
85
69
627
1.97
1.07
5.6
4.9
4.39
4.56
mmol/l
0.68
64
590
39
307
1.55
1.06
4.2
2.6
—
—
estimate
—
0
0
7
34
2.16
1.06
8.6
4.6
23.13
23.89
mmol/l
—
7
34
7
34
2.16
1.06
2.1
1.3
—
—
—
0
0
5
22
2.36
1.05
1.2
1.5
—
—
—
0
0
44
357
1.54
1.04
6.1
3.9
0.00
0.00
estimate
-0.00
15
87
34
262
1.53
1.01
2.9
2.1
87.85
95.60
pmol/l
0.58
16
137
36
281
1.53
1.00
5.4
3.8
0.00
0.01
estimate
0.49
13
72
52
440
1.56
1.00
3.6
3.3
—
—
—
0
0
15
95
1.72
0.96
1.8
1.7
1269.11
1267.68
nmol/l
—
9
73
28
209
1.53
0.95
5.4
4.2
18.48
15.50
mg/mmol
0.08
19
133
11
65
1.81
0.88
3.7
3.1
—
—
—
0
0
28
214
1.48
0.84
5.0
3.4
0.07
0.00
estimate
0.48
15
70
46
388
1.46
0.83
10.9
4.9
6.56
6.60
mmol/l
0.05
41
360
21
151
1.54
0.83
1.7
1.6
—
—
—
0
0
69
636
1.82
0.83
6.0
5.5
2.54
2.68
mmol/l
0.60
62
594
23
170
1.50
0.80
3.3
2.0
2.33
2.70
mg/l
0.55
15
152
43
360
1.44
0.79
6.2
3.9
0.00
0.00
estimate
-0.00
15
86
5
23
2.25
0.77
1.4
1.6
—
—
—
0
0
65
592
1.63
0.77
7.7
5.9
38.99
38.83
mmol/mol
0.06
60
562
5
26
1.99
0.72
1.0
1.3
—
—
—
0
0
13
86
1.62
0.71
23.8
9.3
103.46
105.02
mmol/l
0.41
13
86
46
395
1.41
0.71
14.8
10.3
4.66
4.15
e9/l
0.48
38
351
18
133
1.46
0.62
1.3
1.3
13.51
24.77
iu/ml
—
8
38
0
20
0.00
0.61
0.0
1.3
—
—
—
0
0
67
623
1.58
0.61
5.6
4.9
1.33
1.44
mmol/l
1.32
60
578
17
125
1.46
0.60
1.3
1.3
38.96
11.84
u/ml
—
9
52
14
99
1.51
0.59
2.1
2.2
—
—
—
0
0
0
23
0.00
0.59
0.0
2.1
—
1.24
—
0
12
7
46
1.57
0.50
22.1
13.5
1.10
1.36
%
—
7
46
0
15
0.00
0.41
0.0
1.1
—
—
—
0
0
0
17
0.00
0.41
0.0
1.2
—
—
—
0
0
14
107
1.38
0.41
2.0
2.4
—
—
—
0
0
9
65
1.43
0.40
10.2
5.1
—
—
—
0
0
23
192
1.28
0.38
2.1
1.8
25.37
21.41
nmol/l
0.36
18
164
6
45
1.36
0.34
25.0
13.6
0.58
0.63
%
—
6
45
10
74
1.40
0.34
3.3
2.0
8.10
5.55
umol/l
—
10
63
63
597
1.30
0.33
6.0
4.1
1.47
1.26
mmol/l
0.94
57
549
29
259
1.19
0.25
2.7
2.0
1.10
1.41
mmol/l
1.39
20
226
12
97
1.28
0.24
1.1
1.5
—
—
—
0
0
11
135
0.78
0.24
3.2
2.9
0.98
0.68
ug/l
—
6
84
0
11
0.00
0.21
0.0
1.1
—
0.90
—
0
5
0
10
0.00
0.21
0.0
1.3
—
—
—
0
0
0
10
0.00
0.21
0.0
1.1
—
—
—
0
0
0
10
0.00
0.21
0.0
2.0
—
16.06
—
0
10
0
12
0.00
0.21
0.0
1.8
—
—
—
0
0
0
13
0.00
0.21
0.0
3.1
—
—
—
0
0
0
13
0.00
0.21
0.0
1.4
—
—
—
0
0
5
60
0.82
0.08
1.4
4.8
8.96
6.16
ug/l
—
5
50
18
176
1.03
0.00
3.7
4.6
28.12
23.21
%
—
8
81
0
6
0.00
0.00
0.0
1.3
—
—
—
0
0
0
6
0.00
0.00
0.0
1.3
—
—
—
0
0
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
0
6
0.00
0.00
0.0
1.5
—
—
—
0
0
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
0
6
0.00
0.00
0.0
3.8
—
61.00
—
0
6
0
7
0.00
-0.00
0.0
1.3
—
—
—
0
0
0
5
0.00
-0.00
0.0
2.8
—
5.70
—
0
5
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
8
0.00
-0.00
0.0
1.6
—
346.00
—
0
8
0
7
0.00
-0.00
0.0
1.4
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.6
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.3
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
8
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.3
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.3
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.9
—
8.07
—
0
7
0
7
0.00
-0.00
0.0
1.1
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.4
—
—
—
0
0
0
9
0.00
-0.00
0.0
1.6
—
—
—
0
0
0
9
0.00
-0.00
0.0
1.1
—
—
—
0
0
0
9
0.00
-0.00
0.0
1.2
—
—
—
0
0
Mortality – FinRegistry
↥This endpoint is excluded (different definition than used in FinnGen).
Relationships between endpoints
↥Index endpoint: AB1_CHOLERA_WIDE – Cholera, including avohilmo
GWS hits: -
This endpoint is excluded (different definition than used in FinnGen).