This is a non-core endpoint: only basic statistics are computed.
See these related core endpoints for full statistics:
Abnormal findings in bronchial washings nasal secretions pleural fluid sputum throat scrapings
R18_ABNORMAL_FINDI_BRONCHIAL_WASHI_NASAL_SECRE_PLEURAL_FLUID_SPUTUM_THROAT_SCRAP
No definition available.
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
557745 |
1. Apply sex-specific ruleNone |
557745 |
2. Check conditionsNone |
557745 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters: 2 out of 7 registries used, show all original rules. |
125 |
4. Check minimum number of eventsNone |
125 |
5. Include endpointsNone |
125 |
6. Filter based on genotype QC (FinnGen only) |
107 |
Control definitions (FinnGen only)
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF4
- Parent code in ICD-10
- R8[3-9]
- Name in latin
- Reperta abnormia in speciminibus ex organis respiratoriis et thorace
Similar endpoints
↥List of similar endpoints to
Abnormal findings in bronchial washings nasal secretions pleural fluid sputum throat scrapings
based on the number of shared cases.
Similar with more cases:
- Abnormal findings on examination of other body fluids, substances and tissues, without diagnosis
- Symptoms, signs and abnormal clinical and laboratory findings, not elsewhere classified
- Any operation in hilmo
- Any prescribed medicine buy
- Any event in hilmo or specialist outpatient
Similar with less cases:
None
Case counts by codes
↥
Summary Statistics
↥-FinRegistry-
This endpoint is excluded from FinRegistry analyses (omitted endpoint).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 107 | 48 | 59 |
| Unadjusted period prevalence (%) | 0.02 | 0.02 | 0.03 |
| Median age at first event (years) | 65.56 | 60.95 | 69.32 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
Not a core endpoint, no data to show.
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 111
- Matched controls
- 1110
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
R84.6
ICD-10 Finland
Abnormal findings in specimens from respiratory organs and thorax, abnormal cytological findings
+∞
35.3
32
*
UGC12
NOMESCO Finland
Flexible bronchoscopy
9.9
28.2
41
62
R84.9
ICD-10 Finland
Abnormal findings in specimens from respiratory organs and thorax, unspecified abnormal finding
+∞
26.1
24
*
R84.5
ICD-10 Finland
Abnormal findings in specimens from respiratory organs and thorax, abnormal microbiological findings
+∞
20.4
19
*
R91
ICD-10 Finland
Abnormal findings on diagnostic imaging of lung
6.9
20.2
41
87
R84.0
ICD-10 Finland
Abnormal findings in specimens from respiratory organs and thorax, abnormal level of enzymes
+∞
17.1
16
*
R84.8
ICD-10 Finland
Abnormal findings in specimens from respiratory organs and thorax, other abnormal findings
+∞
12.7
12
*
XG412
NOMESCO Finland
Flow-volume spirometry with bronchospasmolysis
5.7
9.2
19
39
J15.9
ICD-10 Finland
Bacterial pneumonia, unspecified
4.6
9.1
25
66
UJD10
NOMESCO Finland
Esophagoscopy, gastroscopy and duodenoscopy
3.4
9.0
52
230
H02AB06
ATC
prednisolone; systemic
3.2
8.1
72
404
GD1DD
NOMESCO Finland
High resolution CT examination of lungs
5.1
7.5
17
38
GD1QA
NOMESCO Finland
Supine thorax X-ray examination
3.0
6.7
38
162
J18.9
ICD-10 Finland
Pneumonia, unspecified
2.8
6.6
52
264
GD1AA
NOMESCO Finland
Thorax X-ray examination
2.9
6.6
71
424
R84.2
ICD-10 Finland
Abnormal findings in specimens from respiratory organs and thorax, abnormal level of other drugs, medicaments and biological substances
+∞
6.3
6
*
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
24
35
8.47
16.42
4.0
2.2
—
—
—
0
0
23
69
3.94
7.01
2.1
1.4
—
—
—
0
0
41
179
3.05
6.96
2.5
1.8
—
—
—
0
0
31
128
2.97
5.68
2.1
1.7
—
—
—
0
0
17
50
3.83
5.27
4.9
3.5
1.72
1.30
%
0.65
17
50
29
122
2.86
5.10
2.2
1.8
—
—
—
0
0
30
135
2.67
4.62
10.9
6.5
103.73
104.11
mmol/l
0.15
30
135
40
208
2.44
4.56
6.2
4.6
1.02
1.02
kg/l
0.39
30
140
22
84
3.02
4.56
9.1
7.9
11.68
9.79
mmol/l
0.61
22
78
67
442
2.30
4.35
12.8
6.0
1.19
1.21
mmol/l
1.39
62
407
8
9
9.46
4.35
3.1
2.6
—
—
—
0
0
50
293
2.29
4.30
2.0
1.8
20.97
20.86
nmol/l
0.02
41
245
32
160
2.41
3.91
5.5
2.7
0.80
0.82
mmol/l
0.35
32
148
28
133
2.48
3.81
9.9
5.6
1.05
1.03
mmol/l
0.14
28
118
56
358
2.14
3.76
5.3
3.5
—
—
—
0
0
69
479
2.16
3.73
13.6
6.5
1.20
1.21
mmol/l
0.35
59
415
16
59
3.00
3.50
2.1
1.4
—
—
—
0
0
18
72
2.79
3.41
1.3
2.3
64.76
66.83
g/l
0.40
18
64
11
28
4.24
3.39
1.0
1.5
—
—
—
0
0
60
409
2.02
3.25
8.0
4.4
43.32
57.13
ng/l
0.32
53
319
11
30
3.95
3.19
2.1
1.3
—
—
—
0
0
10
25
4.29
3.17
1.2
1.7
0.28
0.23
g/l
—
10
25
10
26
4.12
3.06
1.2
1.7
1.26
1.11
g/l
—
10
26
72
531
2.01
3.05
13.5
9.5
4.17
4.24
e9/l
0.11
65
460
69
502
1.99
3.03
6.2
4.0
0.00
0.04
estimate
0.49
11
94
5
5
10.38
3.00
4.4
7.8
—
—
—
0
0
68
495
1.96
2.95
6.2
4.0
0.00
0.00
estimate
-0.00
12
100
9
22
4.35
2.95
1.8
1.5
—
—
—
0
0
44
277
1.97
2.92
6.7
4.2
0.00
0.00
estimate
-0.00
12
90
7
14
5.26
2.77
1.0
1.1
—
—
—
0
0
30
167
2.09
2.77
1.3
1.3
12.92
23.42
iu/ml
—
10
53
8
19
4.45
2.73
1.5
1.4
—
—
—
0
0
16
68
2.58
2.70
11.5
6.8
25.23
24.87
mmol/l
0.12
16
68
54
373
1.87
2.66
6.1
4.0
0.00
0.00
estimate
-0.00
11
75
7
15
4.90
2.64
1.4
1.2
—
—
—
0
0
9
25
3.82
2.64
1.7
1.4
—
—
—
0
0
66
489
1.86
2.58
6.4
3.9
0.00
0.00
estimate
-0.00
12
100
5
7
7.41
2.57
1.4
1.4
—
—
—
0
0
7
17
4.32
2.40
1.1
1.2
—
—
—
0
0
58
421
1.79
2.35
4.5
2.6
—
—
estimate
—
0
0
58
423
1.78
2.30
2.6
2.2
84.58
94.22
pmol/l
1.23
36
220
12
48
2.68
2.27
6.0
3.6
0.71
0.65
%
0.20
12
48
8
24
3.51
2.23
1.6
1.3
—
—
—
0
0
10
36
2.95
2.20
1.8
1.1
—
—
—
0
0
6
14
4.46
2.18
1.2
1.3
—
—
—
0
0
17
83
2.24
2.15
4.9
4.2
74.12
77.52
ng/l
0.10
17
74
5
10
5.18
2.09
1.6
1.4
—
—
—
0
0
5
10
5.18
2.09
1.6
1.4
—
—
—
0
0
5
10
5.18
2.09
1.6
1.4
—
—
—
0
0
5
10
5.18
2.09
1.4
1.1
—
—
—
0
0
13
57
2.45
2.07
2.0
1.6
—
—
—
0
0
14
65
2.32
1.98
14.6
8.6
0.64
0.67
%
0.08
14
65
6
16
3.90
1.96
6.8
3.6
—
—
—
0
0
5
11
4.70
1.96
1.0
1.4
14.22
14.10
ug/l
—
5
11
14
66
2.28
1.91
14.3
8.5
1.29
1.20
%
0.19
14
66
7
22
3.32
1.91
1.6
1.8
—
—
—
0
0
25
148
1.89
1.91
1.2
1.3
1.16
7.64
u/ml
1.14
11
54
44
312
1.68
1.83
5.3
3.8
4.29
8.84
mg/mmol
1.25
32
210
40
278
1.69
1.79
4.6
3.3
0.12
0.29
e6/l
1.31
35
209
5
13
3.97
1.73
1.4
1.1
—
—
—
0
0
85
722
1.76
1.72
15.9
7.3
83.92
82.17
u/l
0.12
85
686
10
40
2.65
1.71
2.5
1.7
—
—
—
0
0
10
41
2.58
1.69
3.0
1.9
—
—
—
0
0
6
19
3.28
1.68
1.3
1.4
—
—
—
0
0
7
26
2.80
1.61
1.7
1.3
—
—
—
0
0
31
207
1.69
1.59
1.4
1.4
0.84
1.67
u/ml
—
7
58
63
503
1.58
1.56
3.3
2.8
—
—
—
0
0
7
27
2.70
1.54
1.6
1.3
—
—
—
0
0
21
126
1.82
1.54
1.6
1.7
—
—
—
0
0
25
159
1.74
1.51
4.2
2.9
0.63
0.94
e6/l
0.39
18
89
29
194
1.67
1.47
2.2
1.9
520.25
458.45
pmol/l
0.33
24
169
32
223
1.61
1.38
4.8
2.2
—
—
—
0
0
6
26
2.38
1.20
1.2
1.4
—
—
—
0
0
7
36
2.01
0.99
1.4
1.7
35.59
21.30
iu/l
—
7
30
15
97
1.63
0.87
3.9
3.5
—
—
—
0
0
15
98
1.61
0.83
1.9
1.3
—
—
—
0
0
9
58
1.60
0.72
1.8
1.7
—
—
—
0
0
6
39
1.57
0.54
1.0
1.6
7.88
7.70
g/l
—
6
34
6
39
1.57
0.54
1.0
1.6
2.93
3.81
g/l
—
6
34
6
39
1.57
0.54
1.0
1.6
4.02
4.37
g/l
—
6
34
6
40
1.53
0.52
1.3
1.0
—
—
—
0
0
14
102
1.43
0.50
5.9
10.2
—
—
—
0
0
19
147
1.35
0.49
5.3
3.0
5.00
1.09
e6/l
0.71
11
77
33
284
1.23
0.39
4.8
4.3
19.65
21.90
%
0.36
17
136
9
66
1.40
0.39
1.9
1.9
—
—
—
0
0
24
199
1.26
0.39
3.3
3.1
2.48
2.46
mmol/l
0.47
24
177
12
91
1.36
0.35
4.6
2.4
39.58
29.65
u/l
0.73
12
74
92
882
1.25
0.33
46.7
20.5
138.59
139.75
mmol/l
3.09
92
864
92
884
1.24
0.31
46.4
20.6
4.03
4.00
mmol/l
0.39
92
867
5
38
1.33
0.23
1.0
1.6
2.52
3.10
g/l
—
5
33
5
39
1.30
0.23
1.2
1.4
—
—
—
0
0
30
270
1.15
0.22
4.1
3.5
0.00
0.00
estimate
-0.00
11
78
0
11
0.00
0.21
0.0
1.4
—
—
—
0
0
0
12
0.00
0.21
0.0
1.3
—
—
—
0
0
0
12
0.00
0.21
0.0
1.3
—
—
—
0
0
0
12
0.00
0.21
0.0
1.3
—
—
—
0
0
0
12
0.00
0.21
0.0
1.0
—
—
—
0
0
0
13
0.00
0.21
0.0
2.0
—
—
—
0
0
0
14
0.00
0.20
0.0
1.3
—
—
—
0
0
93
910
1.14
0.14
47.5
22.4
86.60
82.63
umol/l
0.43
93
900
9
100
0.89
0.06
2.3
1.2
—
—
—
0
0
0
9
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
-0.00
0.0
2.4
—
1.29
—
0
7
0
5
0.00
-0.00
0.0
3.0
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.5
—
—
—
0
0
0
9
0.00
-0.00
0.0
1.3
—
—
—
0
0
8
81
0.99
-0.00
2.6
2.2
14.43
13.28
nmol/l
—
8
71
0
6
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.8
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.4
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.6
—
12.00
—
0
5
0
5
0.00
-0.00
0.0
1.4
—
1.91
—
0
5
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
Mortality – FinRegistry
↥This endpoint is excluded from FinRegistry analyses (omitted endpoint).
Relationships between endpoints
↥Index endpoint: R18_ABNORMAL_FINDI_BRONCHIAL_WASHI_NASAL_SECRE_PLEURAL_FLUID_SPUTUM_THROAT_SCRAP – Abnormal findings in bronchial washings nasal secretions pleural fluid sputum throat scrapings
GWS hits: -
This endpoint is excluded from FinRegistry analyses (omitted endpoint).