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This is a non-core endpoint: only basic statistics are computed.

Actinic granuloma

L12_ACTINICGRAN

Endpoint definition

Report an error or suggest an improvement for this endpoint codes

Endpoint definition steps

FinnGen

Phenotype data

557745

1. Apply sex-specific rule

None

557745

2. Check conditions

None

557745

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 L57.5
  • Cause of death: ICD-10 L57.5

2 out of 7 registries used, show all original rules.

10

4. Check minimum number of events

None

10

5. Include endpoints

None

10

6. Filter based on genotype QC (FinnGen only)

6

Control definitions (FinnGen only)

Control exclude
L12_RADIATIONRELATEDSKIN

Extra metadata

Level in the ICD hierarchy
4
First used in FinnGen datafreeze
DF2
Parent code in ICD-10
L57
Name in latin
Granuloma actinicum

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 29 14 14
Only index persons 26 14 12
Unadjusted period prevalence (%)
Whole population 0.00 0.00 0.00
Only index persons 0.00 0.00 0.00
Median age at first event (years)
Whole population 58.27 52.64 62.60
Only index persons 57.24 52.64 62.60

-FinnGen-

Key figures

All Female Male
Number of individuals 6 5 -
Unadjusted period prevalence (%) 0.00 0.00 -
Median age at first event (years) 55.47 51.65 -

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

No data

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

No data available

LabWAS

OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
6
37
+∞
1.08
3.3
6.1
—
—
—
0
0
6
44
+∞
0.49
4.7
5.2
14.60
14.87
pmol/l
—
6
37
0
15
0.00
0.49
0.0
3.9
—
91.20
—
0
15
6
43
+∞
0.49
6.5
4.9
—
—
—
0
0
0
14
0.00
0.48
0.0
1.6
—
—
—
0
0
0
10
0.00
0.24
0.0
3.5
—
—
—
0
0
0
9
0.00
0.23
0.0
1.0
—
42.36
—
0
9
0
6
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
5.6
—
24.46
—
0
5
0
5
0.00
-0.00
0.0
2.2
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.4
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.8
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.6
—
—
—
0
0
6
53
+∞
-0.00
25.5
19.7
10.50
19.32
mg/l
—
6
45
0
6
0.00
-0.00
0.0
1.3
—
—
—
0
0
0
8
0.00
-0.00
0.0
3.4
—
—
—
0
0
6
53
+∞
-0.00
5.8
6.7
2.04
1.93
mu/l
—
6
46
0
5
0.00
-0.00
0.0
1.6
—
—
—
0
0

Mortality – FinRegistry

Association

Association between endpoint L12_ACTINICGRAN and mortality.

Females

No data

Males

No data

Mortality risk

Mortality risk for people of age

years, who have L12_ACTINICGRAN.

N-year risk Females Males
1 No data No data
5 No data No data
10 No data No data
15 No data No data
20 No data No data

Relationships between endpoints

Index endpoint: L12_ACTINICGRAN – Actinic granuloma

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
rg [CI]
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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