No definition available.
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
557745 |
1. Apply sex-specific ruleNone |
557745 |
2. Check conditionsNone |
557745 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
3 out of 7 registries used, show all original rules. |
- |
4. Check minimum number of eventsNone |
- |
5. Include endpoints |
88 |
6. Filter based on genotype QC (FinnGen only) |
81 |
Control definitions (FinnGen only)
Controls for this endpoint are individuals that are not cases.
Extra metadata
- Level in the ICD hierarchy
- 2
- First used in FinnGen datafreeze
- DF13
Similar endpoints
↥List of similar endpoints to
Rickettsioses, including avohilmo
based on the number of shared cases.
Similar with more cases:
- Certain infectious and parasitic diseases, including avohilmo
- Any event in hilmo or specialist outpatient
Similar with less cases:
Case counts by codes
↥
Summary Statistics
↥-FinRegistry-
This endpoint is excluded (different definition than used in FinnGen).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 81 | 37 | 44 |
| Unadjusted period prevalence (%) | 0.02 | 0.01 | 0.02 |
| Median age at first event (years) | 47.05 | 36.06 | 56.29 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
No data
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 84
- Matched controls
- 840
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
A78
ICD-10 Finland
Q fever
+∞
19.5
18
*
A77.9
ICD-10 Finland
Spotted fever, unspecified
+∞
10.6
10
*
A79.9
ICD-10 Finland
Rickettsiosis, unspecified
+∞
8.5
8
*
R50.9
ICD-10 Finland
Fever, unspecified
4.0
7.9
29
97
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
26
94
3.56
6.17
9.8
7.8
104.54
104.18
mmol/l
0.17
26
94
28
118
3.06
5.09
4.4
2.7
0.62
1.95
e6/l
0.79
15
62
30
139
2.80
4.54
2.1
1.8
1.21
1.04
mg/l
0.17
25
119
11
23
5.34
4.03
1.6
1.5
76.55
100.13
%
2.04
11
23
28
133
2.66
3.98
4.4
2.6
0.77
0.81
e6/l
0.05
15
78
21
88
2.85
3.76
8.8
6.9
1.04
1.01
mmol/l
0.32
21
81
18
71
2.95
3.58
2.8
3.2
29.06
30.72
u/l
0.15
18
57
15
53
3.23
3.57
20.2
9.1
1.21
1.32
mmol/l
0.18
15
53
10
22
5.01
3.56
1.6
2.0
245.50
180.23
%
—
10
22
13
43
3.39
3.42
18.9
11.0
0.62
0.62
%
0.02
13
43
10
26
4.22
3.10
1.5
1.3
—
—
—
0
0
36
219
2.13
2.79
5.4
2.9
0.05
0.56
e6/l
3.75
29
171
48
326
2.10
2.78
14.8
8.1
1.20
1.21
mmol/l
0.57
43
287
12
44
3.02
2.67
18.5
10.8
1.27
1.34
%
0.09
12
44
14
59
2.65
2.44
9.4
3.9
1.67
2.07
mmol/l
0.19
14
48
26
146
2.13
2.43
5.1
3.7
68.75
80.55
ng/l
0.09
20
108
53
388
1.99
2.35
3.8
3.8
0.18
0.00
estimate
0.47
11
84
52
380
1.97
2.30
3.8
3.7
0.00
0.00
estimate
-0.00
12
85
10
36
3.01
2.22
7.8
3.8
133.70
132.03
g/l
—
10
36
14
62
2.51
2.22
9.5
4.1
6.08
5.68
kpa
1.08
14
62
9
32
3.02
2.07
8.0
2.8
1.53
1.56
%
—
9
32
17
86
2.22
2.02
2.7
2.2
—
—
—
0
0
17
87
2.20
1.97
3.0
2.1
—
—
—
0
0
51
384
1.84
1.92
3.9
3.8
0.00
0.00
estimate
-0.00
12
89
6
17
3.72
1.87
1.2
1.4
—
—
—
0
0
9
35
2.76
1.86
12.4
3.3
23.56
24.50
mmol/l
—
9
35
8
29
2.94
1.84
3.0
1.8
37.45
77.08
u/ml
—
8
29
40
284
1.78
1.80
2.4
2.0
107.11
96.56
pmol/l
0.67
26
144
7
24
3.09
1.76
1.1
1.5
1.37
1.04
g/l
—
7
24
5
13
4.02
1.74
1.2
1.4
—
—
—
0
0
19
107
2.00
1.73
4.2
2.6
21.23
26.44
%
1.21
19
101
11
50
2.38
1.65
8.3
3.0
4.12
4.36
kpa
0.17
11
50
13
65
2.18
1.59
2.8
3.4
—
—
—
0
0
7
27
2.73
1.55
1.9
1.9
—
—
—
0
0
7
27
2.73
1.55
1.9
1.6
—
—
—
0
0
9
37
2.60
1.53
20.6
10.1
23.67
24.69
mmol/l
—
9
37
11
52
2.28
1.52
4.4
2.7
62.00
69.41
ml/min/173m2
—
6
27
43
323
1.68
1.51
3.3
2.9
—
—
estimate
—
0
0
10
48
2.23
1.34
7.2
4.0
135.06
78.08
ng/l
—
10
43
6
24
2.61
1.33
1.2
1.5
0.33
0.19
g/l
—
6
24
8
35
2.42
1.31
3.4
1.5
—
—
—
0
0
11
56
2.11
1.29
3.8
2.0
—
—
—
0
0
5
19
2.73
1.23
1.6
1.6
—
—
—
0
0
8
38
2.22
1.22
2.3
1.9
—
—
—
0
0
6
26
2.41
1.21
1.2
1.9
—
—
—
0
0
18
113
1.75
1.18
3.1
2.3
—
—
—
0
0
23
157
1.64
1.12
2.9
2.3
—
—
—
0
0
7
32
2.29
1.11
1.3
2.6
—
—
—
0
0
15
92
1.77
1.06
2.6
1.9
—
—
—
0
0
9
48
1.98
1.04
3.8
4.3
135.78
184.32
ng/l
—
9
42
54
454
1.53
1.03
3.9
3.4
—
—
—
0
0
31
234
1.51
0.98
3.0
2.9
53.94
58.15
u/l
0.46
31
219
16
104
1.67
0.93
3.0
1.9
—
—
—
0
0
30
228
1.49
0.91
5.6
4.0
3.84
11.17
mg/mmol
1.48
22
150
6
31
2.01
0.86
4.3
3.6
36.58
45.98
%
—
6
31
19
132
1.57
0.85
1.3
1.3
5.09
12.46
u/ml
—
9
51
76
706
1.80
0.82
30.2
15.8
27.20
21.51
mg/l
0.56
67
578
13
83
1.67
0.80
2.5
2.6
389.69
372.33
nmol/l
0.14
13
76
5
23
2.25
0.77
1.4
1.7
95.80
249.61
ug/l
—
5
23
5
24
2.15
0.76
1.4
1.8
—
—
—
0
0
23
173
1.45
0.72
3.4
2.9
0.59
0.73
ug/l
0.73
18
102
5
26
1.98
0.72
1.0
2.6
—
—
—
0
0
75
703
1.62
0.68
33.6
18.6
3.98
3.96
mmol/l
0.27
75
688
20
149
1.45
0.66
1.7
1.3
15.07
34.81
iu/ml
—
10
44
8
49
1.70
0.64
4.0
1.9
—
—
—
0
0
0
22
0.00
0.60
0.0
1.2
—
—
—
0
0
8
54
1.53
0.59
2.0
1.7
—
—
—
0
0
28
228
1.34
0.55
3.1
3.0
0.00
0.00
estimate
—
10
72
28
230
1.33
0.52
3.9
4.7
20.93
21.98
%
0.15
13
103
19
148
1.37
0.49
1.4
1.6
—
—
—
0
0
48
428
1.28
0.48
18.6
11.4
3.77
4.17
e9/l
0.62
41
386
35
300
1.29
0.47
2.9
3.5
0.00
0.05
estimate
—
9
75
74
702
1.45
0.45
33.6
18.5
139.39
139.78
mmol/l
0.62
74
690
11
79
1.45
0.43
6.1
4.3
3.82
97.29
ug/l
0.54
11
64
0
15
0.00
0.41
0.0
1.2
—
—
—
0
0
26
222
1.25
0.35
2.7
3.8
0.00
0.03
estimate
—
9
80
6
44
1.39
0.35
6.2
4.5
4.72
4.57
pmol/l
—
6
39
32
284
1.20
0.30
3.4
3.8
19.16
34.48
ng/l
0.73
22
194
5
70
0.70
0.27
5.6
7.1
—
—
—
0
0
0
11
0.00
0.21
0.0
1.3
—
—
—
0
0
0
11
0.00
0.21
0.0
1.7
—
16.72
—
0
6
0
11
0.00
0.21
0.0
1.1
—
9.25
—
0
6
0
12
0.00
0.21
0.0
1.2
—
—
—
0
0
0
12
0.00
0.21
0.0
1.3
—
—
—
0
0
0
12
0.00
0.21
0.0
1.3
—
—
—
0
0
0
13
0.00
0.21
0.0
1.5
—
—
—
0
0
0
13
0.00
0.21
0.0
1.1
—
—
—
0
0
0
13
0.00
0.21
0.0
1.2
—
—
—
0
0
7
57
1.25
0.19
1.4
1.4
—
—
—
0
0
19
175
1.11
0.09
1.6
1.3
0.48
1.79
u/ml
—
6
50
12
111
1.09
0.04
1.2
1.5
—
—
—
0
0
16
169
0.93
0.03
3.4
3.8
1.01
1.02
kg/l
—
7
116
0
5
0.00
-0.00
0.0
3.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
3.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
3.0
—
—
—
0
0
0
6
0.00
-0.00
0.0
5.3
—
10.23
—
0
6
0
7
0.00
-0.00
0.0
2.7
—
—
—
0
0
0
8
0.00
-0.00
0.0
2.5
—
—
—
0
0
0
7
0.00
-0.00
0.0
2.7
—
—
—
0
0
77
769
1.02
-0.00
40.9
24.4
132.97
136.01
g/l
0.93
77
763
77
768
1.03
-0.00
42.6
24.7
39.86
40.81
%
1.00
77
762
0
5
0.00
-0.00
0.0
3.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
75
742
1.10
-0.00
36.1
20.4
95.47
79.11
umol/l
0.59
75
734
0
8
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
2.0
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.1
—
—
—
0
0
0
5
0.00
-0.00
0.0
2.0
—
—
—
0
0
0
7
0.00
-0.00
0.0
2.7
—
—
—
0
0
0
6
0.00
-0.00
0.0
5.3
—
4.50
—
0
6
0
5
0.00
-0.00
0.0
3.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
2.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
2.0
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.0
—
—
—
0
0
5
50
1.00
-0.00
2.4
3.8
1.22
1.21
mmol/l
—
5
43
0
5
0.00
-0.00
0.0
3.0
—
—
—
0
0
0
7
0.00
-0.00
0.0
2.7
—
—
—
0
0
0
7
0.00
-0.00
0.0
2.9
—
—
—
0
0
(40770918) von Willebrand factor (vWf).activity actual/normal in Platelet poor plasma by Immunoassay
0
5
0.00
-0.00
0.0
3.2
—
97.80
—
0
5
0
5
0.00
-0.00
0.0
3.4
—
30.34
—
0
5
0
6
0.00
-0.00
0.0
1.0
—
21.77
—
0
6
77
768
1.03
-0.00
40.7
24.2
91.36
91.22
fl
0.11
77
763
0
5
0.00
-0.00
0.0
2.0
—
—
—
0
0
0
8
0.00
-0.00
0.0
2.5
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
3.0
—
—
—
0
0
0
9
0.00
-0.00
0.0
2.1
—
—
—
0
0
0
9
0.00
-0.00
0.0
2.1
—
—
—
0
0
0
9
0.00
-0.00
0.0
2.1
—
—
—
0
0
Mortality – FinRegistry
↥This endpoint is excluded (different definition than used in FinnGen).
Relationships between endpoints
↥Index endpoint: AB1_RICKETTSIOSES_WIDE – Rickettsioses, including avohilmo
GWS hits: -
This endpoint is excluded (different definition than used in FinnGen).