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This is a non-core endpoint: only basic statistics are computed.

Bartonellosis

Endpoint Browser

AB1_BARTONELLOSIS_WIDE

Endpoint definition

↥

Report an error or suggest an improvement for this endpoint codes

Endpoint definition steps

FinnGen

Phenotype data

519972

1. Apply sex-specific rule

None

519972

2. Check conditions

None

519972

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Primary healthcare outpatient: ICD-10 — A44
  • Hospital discharge: ICD-10 — A44
  • Hospital discharge: ICD-9 — 0880A
  • Cause of death: ICD-10 — A44
  • Cause of death: ICD-9 — 0880A

3 out of 7 registries used, show all original rules.

31

4. Check minimum number of events

None

31

5. Include endpoints

None

31

6. Filter based on genotype QC (FinnGen only)

31

Control definitions (FinnGen only)

Control exclude
AB1_OTHER_BACTERIAL

Extra metadata

Level in the ICD hierarchy
3
First used in FinnGen datafreeze
DF13

Case counts by codes

↥

FinnGen case counts by registry codes:

No upset plot: unknown.

No upset table: unknown.

Summary Statistics

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-FinRegistry-

This endpoint is excluded (different definition than used in FinnGen).

-FinnGen-

Key figures

All Female Male
Number of individuals 31 13 18
Unadjusted period prevalence (%) 0.01 0.00 0.01
Median age at first event (years) 58.74 52.13 63.51

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS (R11)

↥

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

No data available

LabWAS

↥
OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
10
20
6.84
4.11
2.9
3.5
—
—
—
0
0
10
28
4.76
3.13
2.7
1.6
29.10
28.73
s
—
10
28
6
10
7.12
2.84
3.3
2.3
22.07
25.37
mmol/l
—
6
10
8
21
4.75
2.68
3.0
3.1
5.35
5.85
kpa
—
8
21
5
9
6.37
2.30
1.4
1.4
0.17
0.23
g/l
—
5
9
6
14
5.03
2.27
3.5
1.8
4.47
5.27
kpa
—
6
14
12
52
3.13
2.21
8.9
3.3
—
—
—
0
0
5
11
5.18
2.02
3.6
6.1
11.00
7.05
mmol/l
—
5
11
5
11
5.18
2.02
4.0
1.6
118.80
139.55
g/l
—
5
11
7
22
3.80
2.02
4.1
3.9
0.91
0.99
mmol/l
—
7
22
8
29
3.35
1.96
17.1
6.9
104.75
104.76
mmol/l
—
8
29
5
12
4.74
1.90
4.2
1.7
—
—
—
0
0
5
12
4.74
1.90
4.2
1.7
4.58
5.02
kpa
—
5
12
18
106
2.66
1.83
14.6
5.5
1.19
1.23
mmol/l
1.05
18
91
7
25
3.31
1.77
1.3
1.3
—
—
—
0
0
9
37
3.01
1.65
1.3
1.5
—
—
—
0
0
7
27
3.04
1.63
2.4
1.4
—
—
—
0
0
5
15
3.76
1.59
6.4
3.0
—
—
—
0
0
11
54
2.61
1.56
6.0
6.9
—
—
—
0
0
13
70
2.48
1.53
5.7
3.7
—
5.93
—
0
7
13
73
2.34
1.37
4.2
2.5
—
—
—
0
0
16
99
2.27
1.35
12.8
5.2
1.19
1.22
mmol/l
0.64
16
89
7
30
2.71
1.22
1.7
1.3
—
—
—
0
0
7
31
2.62
1.20
2.0
1.6
—
—
—
0
0
12
69
2.21
1.17
4.5
4.1
—
7.41
—
0
7
7
33
2.44
1.14
1.3
1.3
—
—
—
0
0
5
21
2.64
1.13
24.2
8.4
—
—
—
0
0
10
54
2.26
1.12
9.8
3.7
—
—
—
0
0
9
49
2.17
1.11
4.4
2.9
89.89
84.63
%
—
9
49
12
71
2.13
1.08
3.0
2.7
60.75
58.33
u/l
0.08
12
60
20
247
0.46
1.07
5.0
4.4
4.57
4.66
mmol/l
0.12
20
229
0
29
0.00
1.04
0.0
1.3
—
—
—
0
0
8
42
2.21
0.98
5.6
4.5
—
—
—
0
0
20
244
0.49
0.94
5.0
4.3
1.35
1.49
mmol/l
0.55
20
226
8
46
1.99
0.91
4.4
3.1
11.88
117.91
ng/l
—
8
34
14
95
1.86
0.83
7.2
3.1
30.92
36.23
g/l
1.45
14
87
20
240
0.53
0.78
4.1
3.9
1.45
1.30
mmol/l
0.53
20
220
5
25
2.19
0.76
1.4
1.4
—
—
—
0
0
5
26
2.09
0.74
2.6
1.6
—
—
—
0
0
20
156
1.79
0.73
5.8
3.3
—
—
—
0
0
8
49
1.85
0.69
3.5
2.5
554.38
510.88
mosm/kgh2o
—
8
40
10
64
1.83
0.69
3.5
2.3
3.61
4.66
e6/l
—
10
56
22
252
0.56
0.63
4.7
4.9
2.71
2.75
mmol/l
0.06
22
233
9
58
1.77
0.63
2.6
1.7
1.81
1.25
mmol/l
—
9
49
10
66
1.76
0.62
2.2
2.0
—
—
—
0
0
21
241
0.60
0.52
4.1
4.3
5.84
5.93
mmol/l
0.21
21
219
23
252
0.66
0.46
23.2
8.8
—
—
—
0
0
21
178
1.56
0.45
12.2
6.6
183.52
76.80
u/l
0.88
21
162
12
93
1.47
0.37
3.5
2.0
—
—
—
0
0
6
44
1.45
0.37
1.2
1.3
—
—
—
0
0
7
53
1.41
0.34
3.7
3.3
—
—
—
0
0
13
105
1.41
0.32
13.4
6.0
—
—
—
0
0
26
273
0.71
0.25
39.2
16.8
90.98
90.63
fl
0.15
26
267
26
273
0.71
0.25
39.5
16.9
132.38
137.97
g/l
0.96
26
267
26
273
0.71
0.25
39.3
16.8
30.24
30.31
pg
0.08
26
267
0
10
0.00
0.22
0.0
1.6
—
—
—
0
0
0
10
0.00
0.22
0.0
1.1
—
—
—
0
0
0
12
0.00
0.21
0.0
1.8
—
—
—
0
0
8
69
1.21
0.18
6.5
2.7
6.30
8.24
mmol/l
—
8
55
20
214
0.82
0.12
32.8
14.5
15.80
14.63
%
0.42
20
209
16
173
0.84
0.10
4.0
3.3
—
—
—
0
0
26
250
1.25
0.09
33.8
12.8
3.95
3.98
mmol/l
0.32
26
245
26
248
1.30
0.09
33.7
12.8
139.42
139.93
mmol/l
0.41
26
243
10
89
1.18
0.08
2.8
2.1
135.10
118.24
ug/l
—
10
81
9
98
0.89
0.07
3.1
2.9
—
—
—
0
0
16
171
0.87
0.07
3.6
3.9
15.37
14.94
pmol/l
0.27
16
155
21
219
0.87
0.05
3.7
4.5
1.73
1.84
mu/l
0.25
21
197
23
228
1.03
0.00
6.3
5.2
41.39
39.34
mmol/mol
0.34
23
214
0
9
0.00
-0.00
0.0
1.1
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
9
0.00
-0.00
0.0
1.0
—
—
—
0
0
6
58
1.04
-0.00
5.5
2.6
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.2
—
—
—
0
0
26
260
1.00
-0.00
31.9
13.4
81.69
77.89
umol/l
0.27
26
260
0
5
0.00
-0.00
0.0
1.4
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.3
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
4.6
—
16.80
—
0
5
0
5
0.00
-0.00
0.0
1.8
—
—
—
0
0
0
5
0.00
-0.00
0.0
2.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0

Mortality – FinRegistry

↥

This endpoint is excluded (different definition than used in FinnGen).

Relationships between endpoints

↥

Index endpoint: AB1_BARTONELLOSIS_WIDE – Bartonellosis

GWS hits: -

This endpoint is excluded (different definition than used in FinnGen).