No definition available.
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
557745 |
1. Apply sex-specific ruleNone |
557745 |
2. Check conditions
|
557086 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
3 out of 7 registries used, show all original rules. |
62 |
4. Check minimum number of eventsNone |
62 |
5. Include endpointsNone |
62 |
6. Filter based on genotype QC (FinnGen only) |
56 |
Control definitions (FinnGen only)
Controls for this endpoint are individuals that are not cases.
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF9
- Parent code in ICD-10
- D00
Similar endpoints
↥List of similar endpoints to
Carcinoma in situ of oral cavity and pharynx
based on the number of shared cases.
Similar with more cases:
- Neoplasms
- Any operation in hilmo
- Any prescribed medicine buy
- Any event in hilmo or specialist outpatient
Similar with less cases:
None
Case counts by codes
↥
Summary Statistics
↥-FinRegistry-
This endpoint is excluded from FinRegistry analyses (omitted endpoint).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 56 | 20 | 36 |
| Unadjusted period prevalence (%) | 0.01 | 0.01 | 0.02 |
| Median age at first event (years) | 64.46 | 69.65 | 61.58 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
No data
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 57
- Matched controls
- 570
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
EJA10
NOMESCO Finland
Biopsy of tongue or floor of mouth
285.2
31.1
29
*
D00.06
ICD-10 Finland
Cancer in situ in another part of the tongue
+∞
22.3
20
*
C02.11
ICD-10 Finland
Malignant neoplasm of border of tongue
236.5
17.5
17
*
EJB10
NOMESCO Finland
Excision of tumor or other lesion of apex or body of tongue
69.3
17.3
19
*
SBB00
NOMESCO Finland
Clinical photography of mouth and teeth
43.4
13.4
16
5
SAA03
NOMESCO Finland
Extended examination of mouth
7.7
13.1
39
125
K08.1
ICD-10 Finland
Loss of teeth due to accident, extraction or local periodontal disease
8.3
12.0
20
35
K13.79
ICD-10 Finland
Change in the oral mucosa UNS
27.0
12.0
16
8
EN1BD
NOMESCO Finland
Very extensive CT examination of mouth and soft tissues of neck
74.4
11.1
12
*
EJB30
NOMESCO Finland
Excision of tumor or other lesion of floor of the mouth
133.6
10.8
11
*
ECA20
NOMESCO Finland
Biopsy of gingiva
133.6
10.8
11
*
D00.04
ICD-10 Finland
In situ cancer of the floor of the mouth
+∞
10.7
10
*
K13.28
ICD-10 Finland
Other leukoplakia or disorder of epithelium of the palate or tongue
+∞
10.7
10
*
EKA10
NOMESCO Finland
iopsy of buccal mucosa
25.8
10.4
14
7
K13.78
ICD-10 Finland
Other change in the oral mucosa
27.4
9.9
13
6
EP1AE
NOMESCO Finland
Neck ultrasound examination
12.0
9.7
18
21
D00.01
ICD-10 Finland
In situ cancer of the mucous membrane of the cheek
+∞
9.6
9
*
8070/3-C02.1
ICD-O-3
Squamous cell carcinoma, NOS, of border of tongue
+∞
8.5
8
*
JDB10
NOMESCO Finland
Percutaneous gastrostomy
52.5
8.0
9
*
504
Kela drug reimbursment
Conditions requiring daily forced enteral nutrition
29.7
7.9
10
*
PJD71
NOMESCO Finland
Extended sparing excision of cervical lymph nodes
91.5
7.6
8
*
D00.05
ICD-10 Finland
In situ cancer of the pharyngeal part of the tongue
+∞
7.4
7
*
GBB00
NOMESCO Finland
Tracheostomy
34.9
7.4
9
*
WZC00
NOMESCO Finland
Treatment plan or consultation
4.5
7.4
33
133
SBA00
NOMESCO Finland
Microbiological examinations
16.6
7.2
11
8
EKB00
NOMESCO Finland
Excision of tumour or other lesion of cheek
45.6
6.9
8
*
EN1AD
NOMESCO Finland
CT examination of mouth and soft tissues of neck
26.2
6.9
9
*
EHA10
NOMESCO Finland
Biopsy of palate
78.3
6.6
7
*
K13.20
ICD-10 Finland
Idiopathic leukoplakia
78.3
6.6
7
*
EP1CG
NOMESCO Finland
Extensive MRI examination of soft tissue of neck with high intesity magnet
78.3
6.6
7
*
130
Kela drug reimbursment
Malignant tumour
6.5
6.4
17
35
K13.29
ICD-10 Finland
Indefinite leukoplakia
30.4
6.4
8
*
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
25
104
3.50
4.94
3.2
2.7
—
—
—
0
0
37
207
3.24
4.35
4.1
2.7
—
—
estimate
—
0
0
6
6
10.97
3.58
1.3
1.3
—
—
—
0
0
11
32
4.01
3.10
2.0
1.4
—
—
—
0
0
18
79
2.87
3.07
2.3
2.7
0.32
0.75
e6/l
0.87
11
42
17
75
2.81
2.85
8.6
7.9
102.76
104.13
mmol/l
0.32
17
75
15
63
2.87
2.74
1.5
1.7
—
—
—
0
0
18
84
2.67
2.71
4.4
6.7
0.92
1.03
mmol/l
1.53
18
75
38
255
2.47
2.60
10.4
6.8
11.74
11.58
umol/l
0.03
38
243
18
86
2.60
2.58
2.2
2.1
—
—
—
0
0
9
34
2.95
1.97
2.4
2.6
2.13
1.36
%
—
9
34
13
60
2.51
1.95
12.6
10.6
—
—
—
0
0
8
28
3.15
1.95
2.0
3.0
25.15
24.23
mmol/l
—
8
28
31
212
2.01
1.78
2.7
2.1
96.91
93.07
pmol/l
0.20
19
106
8
31
2.83
1.73
1.9
1.8
—
—
—
0
0
11
50
2.49
1.69
2.2
4.1
6.18
5.39
umol/l
0.17
11
44
13
65
2.30
1.64
13.1
8.7
-0.30
0.98
mmol/l
0.72
13
51
39
295
2.02
1.63
8.4
5.5
6.94
6.67
mmol/l
0.33
39
281
12
61
2.23
1.45
1.6
1.7
—
—
—
0
0
5
18
2.94
1.31
1.4
1.7
—
0.01
—
0
5
8
36
2.42
1.30
3.0
3.1
48.30
51.56
%
—
8
36
21
144
1.73
1.08
3.1
3.0
0.33
0.23
e6/l
0.20
15
101
7
34
2.20
1.07
15.9
8.4
24.24
24.86
mmol/l
—
7
34
23
163
1.69
1.05
3.6
3.3
36.22
29.94
u/l
0.45
23
152
9
50
1.95
1.02
2.6
2.3
444.67
378.80
nmol/l
—
9
44
9
50
1.95
1.02
3.2
4.5
3.14
12.70
ug/l
—
9
41
10
55
1.99
0.99
2.9
3.6
1.22
1.88
mmol/l
—
10
47
43
366
1.71
0.92
15.1
8.2
86.91
74.95
u/l
1.02
43
347
8
47
1.81
0.85
1.6
1.3
—
—
—
0
0
34
277
1.56
0.83
2.9
2.9
—
—
—
0
0
6
33
1.91
0.81
1.5
1.8
—
—
—
0
0
9
58
1.65
0.74
1.4
1.4
—
—
—
0
0
5
28
1.86
0.68
11.4
2.8
—
—
—
0
0
5
83
0.56
0.50
1.4
1.2
—
9.39
—
0
29
23
189
1.36
0.46
4.1
3.2
—
—
—
0
0
5
31
1.67
0.44
1.2
1.7
—
—
—
0
0
0
16
0.00
0.42
0.0
1.4
—
1.81
—
0
11
15
117
1.38
0.40
6.4
4.0
1.02
1.02
kg/l
—
10
72
40
363
1.34
0.39
6.5
4.5
15.20
12.11
mm/h
0.69
40
332
35
320
1.24
0.27
5.7
3.3
66.63
51.81
u/l
0.44
35
309
48
457
1.32
0.22
34.1
18.0
37.16
22.88
mg/l
1.80
41
383
17
195
0.82
0.22
3.1
4.3
14.92
22.56
%
—
6
92
0
11
0.00
0.21
0.0
1.9
—
—
—
0
0
0
11
0.00
0.21
0.0
2.0
—
—
—
0
0
25
225
1.20
0.21
4.6
4.6
14.95
30.16
ng/l
2.62
20
173
18
202
0.84
0.18
1.6
1.9
1.29
1.37
mmol/l
0.17
13
167
0
8
0.00
0.00
0.0
1.1
—
182.70
—
0
8
0
6
0.00
0.00
0.0
1.3
—
—
—
0
0
0
8
0.00
0.00
0.0
1.1
—
—
—
0
0
0
6
0.00
0.00
0.0
1.3
—
14.50
—
0
6
0
7
0.00
-0.00
0.0
1.3
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
16.60
—
0
5
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
2.2
—
10.36
—
0
5
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
2.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
2.2
—
4.67
—
0
5
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
Mortality – FinRegistry
↥This endpoint is excluded from FinRegistry analyses (omitted endpoint).
Relationships between endpoints
↥Index endpoint: CD2_INSITU_OROPHARYNX – Carcinoma in situ of oral cavity and pharynx
GWS hits: -
This endpoint is excluded from FinRegistry analyses (omitted endpoint).