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Other infestations

EFO Endpoint Browser PheWeb

AB1_OTHER_INFESTATIONS

Endpoint definition

↥

Report an error or suggest an improvement for this endpoint codes

Endpoint definition steps

FinnGen

Phenotype data

557745

1. Apply sex-specific rule

None

557745

2. Check conditions

None

557745

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — B88
  • Hospital discharge: ICD-9 — 134
  • Hospital discharge: ICD-8 — 1299
  • Hospital discharge: excluded ICD-9 — 1340A
  • Cause of death: ICD-10 — B88
  • Cause of death: ICD-9 — 134
  • Cause of death: ICD-8 — 1299
  • Cause of death: excluded ICD-9 — 1340A

2 out of 7 registries used, show all original rules.

91

4. Check minimum number of events

None

91

5. Include endpoints

None

91

6. Filter based on genotype QC (FinnGen only)

84

Control definitions (FinnGen only)

Control exclude
AB1_PEDICULOSIS_ACARIASIS_OTHERINFEST

Extra metadata

Level in the ICD hierarchy
3
First used in FinnGen datafreeze
DF5

Case counts by codes

↥

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

↥

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 719 350 362
Only index persons 625 315 310
Unadjusted period prevalence (%)
Whole population 0.01 0.01 0.01
Only index persons 0.01 0.01 0.01
Median age at first event (years)
Whole population 44.33 46.56 42.11
Only index persons 47.68 50.31 45.01

-FinnGen-

Key figures

All Female Male
Number of individuals 84 46 38
Unadjusted period prevalence (%) 0.02 0.02 0.02
Median age at first event (years) 60.57 60.77 60.31

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

No data

CodeWAS

↥

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

Matched cohort

Matched cases
89
Matched controls
890
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
B88.0
ICD-10 Finland
Other acariasis
2299.9
80.8
66
*
B88.9
ICD-10 Finland
Infestation, unspecified
+∞
10.6
10
*
B88.8
ICD-10 Finland
Other specified infestations
+∞
6.3
6
*

LabWAS

↥
OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
79
626
3.33
3.44
3.7
4.5
14.78
14.89
pmol/l
0.17
74
569
13
46
3.14
3.07
1.3
1.2
—
—
—
0
0
89
825
+∞
2.54
21.2
23.7
79.74
79.54
umol/l
0.03
89
812
52
371
1.97
2.47
1.9
2.2
98.85
93.83
pmol/l
0.18
19
183
55
410
1.89
2.19
7.5
6.7
8.59
8.73
%
0.14
50
388
89
843
+∞
1.76
26.1
27.2
135.02
134.11
g/l
0.21
89
835
89
842
+∞
1.76
26.2
27.9
40.33
40.18
%
0.08
89
833
89
842
+∞
1.76
26.0
27.1
4.49
4.44
e12/l
0.41
89
823
89
842
+∞
1.76
26.0
27.0
30.25
30.43
pg
0.42
89
835
89
842
+∞
1.76
26.0
27.0
90.76
91.48
fl
0.82
89
835
89
842
+∞
1.76
25.9
27.1
241.30
247.65
e9/l
0.36
89
826
89
842
+∞
1.76
26.1
27.1
6.36
6.71
e9/l
1.06
89
825
17
94
2.00
1.61
1.5
1.2
—
—
—
0
0
15
79
2.08
1.61
4.0
6.4
0.20
0.12
%
—
5
26
18
102
1.96
1.59
1.7
2.6
64.39
148.14
ug/g
0.92
12
76
40
296
1.64
1.44
6.7
6.6
—
—
—
0
0
5
18
2.88
1.30
1.2
1.3
—
—
—
0
0
15
86
1.90
1.28
4.2
6.1
0.60
0.91
%
—
5
34
45
351
1.57
1.27
3.8
4.0
41.12
40.30
ng/l
0.02
34
265
80
727
1.99
1.24
4.5
4.4
1.28
1.27
mmol/l
0.08
75
662
5
19
2.72
1.23
1.0
1.2
0.86
0.91
g/l
—
5
19
23
153
1.68
1.22
1.6
2.0
—
—
—
0
0
8
38
2.21
1.22
2.4
4.2
1.01
0.93
%
—
8
32
55
452
1.57
1.21
7.1
7.2
0.21
0.19
e9/l
0.20
49
396
0
36
0.00
1.17
0.0
6.0
—
49.13
—
0
30
21
138
1.68
1.16
2.2
3.1
0.64
1.26
e6/l
0.81
15
73
35
262
1.55
1.16
3.5
3.2
0.47
0.31
e6/l
0.20
28
192
19
278
0.60
1.16
2.8
4.3
0.00
0.00
estimate
—
6
99
7
31
2.36
1.13
1.0
1.1
—
—
—
0
0
53
441
1.50
1.04
7.2
6.9
0.04
0.04
e9/l
0.13
48
380
12
191
0.57
0.99
1.2
3.4
2.41
2.46
mmol/l
0.95
12
169
27
197
1.53
0.98
1.2
1.6
3.20
2.53
g/l
0.41
13
123
52
435
1.47
0.97
4.9
8.5
1.23
1.21
mmol/l
1.84
46
369
9
52
1.81
0.95
1.3
1.2
—
—
—
0
0
6
30
2.07
0.89
1.3
1.2
11.30
7.20
u/l
—
6
23
28
211
1.48
0.87
1.4
1.4
1.97
1.78
u/ml
—
7
62
52
441
1.43
0.86
7.1
6.8
0.57
0.58
e9/l
0.12
47
382
8
47
1.77
0.83
2.5
3.9
1.53
1.49
%
—
8
41
0
26
0.00
0.80
0.0
1.3
—
—
—
0
0
0
26
0.00
0.80
0.0
4.4
—
7.41
—
0
26
5
23
2.24
0.77
1.2
1.3
—
—
—
0
0
5
23
2.24
0.77
1.2
1.3
—
—
—
0
0
29
225
1.43
0.77
2.7
5.1
—
—
—
0
0
5
24
2.15
0.76
1.2
1.3
—
—
—
0
0
5
24
2.15
0.76
1.2
1.3
—
—
—
0
0
5
24
2.15
0.76
1.2
1.3
—
—
—
0
0
34
273
1.40
0.74
6.0
7.8
—
—
—
0
0
5
25
2.06
0.74
8.2
3.9
—
—
—
0
0
40
332
1.37
0.71
3.6
4.1
85.12
79.68
e6/l
0.03
30
242
19
139
1.47
0.68
2.0
1.9
—
—
—
0
0
41
477
0.74
0.67
4.5
4.1
0.00
0.04
estimate
—
6
105
5
28
1.83
0.67
2.0
1.4
252.40
312.46
mu/l
—
5
28
47
405
1.34
0.64
11.3
13.7
0.00
0.01
e9/l
0.53
42
337
33
270
1.35
0.63
2.5
3.0
—
—
—
0
0
21
159
1.42
0.63
2.0
2.4
2.40
2.28
g/l
0.61
21
147
47
407
1.33
0.61
17.0
14.2
1.31
1.26
inr
0.22
41
341
0
20
0.00
0.61
0.0
3.7
—
4.83
—
0
20
0
20
0.00
0.61
0.0
3.6
—
2.48
—
0
11
0
20
0.00
0.61
0.0
3.6
—
8.46
—
0
20
14
98
1.51
0.61
1.4
1.7
—
—
—
0
0
45
388
1.32
0.60
2.7
2.9
—
—
estimate
—
0
0
11
73
1.58
0.59
1.4
1.8
—
—
—
0
0
37
311
1.32
0.59
4.3
4.0
—
—
—
0
0
41
470
0.76
0.57
4.4
4.1
0.00
14.50
estimate
—
7
112
33
275
1.32
0.55
2.6
2.6
—
—
—
0
0
36
305
1.30
0.53
3.5
3.4
15.61
21.71
e6/l
0.52
28
240
10
67
1.55
0.52
2.1
1.6
—
—
—
0
0
41
466
0.78
0.51
4.5
4.1
0.00
0.00
estimate
—
7
113
38
326
1.29
0.51
2.2
2.1
—
—
—
0
0
11
76
1.51
0.51
4.8
3.6
7.38
7.32
ph
—
6
50
15
112
1.41
0.48
3.5
7.8
1.09
1.04
mmol/l
0.25
15
107
26
215
1.30
0.45
2.0
3.6
343.95
350.31
umol/l
0.09
20
185
14
105
1.40
0.44
1.3
1.3
—
—
—
0
0
39
342
1.25
0.42
2.1
2.1
1.30
1.36
mmol/l
0.16
32
276
0
16
0.00
0.41
0.0
2.4
—
4.62
—
0
16
0
17
0.00
0.41
0.0
4.1
—
61.62
—
0
17
0
18
0.00
0.40
0.0
1.1
—
2.30
—
0
11
32
276
1.25
0.40
3.6
3.6
—
—
—
0
0
0
19
0.00
0.39
0.0
3.2
—
—
—
0
0
0
19
0.00
0.39
0.0
2.7
—
11.76
—
0
19
11
81
1.41
0.38
1.3
1.6
—
—
—
0
0
9
123
0.70
0.38
3.0
3.5
3.17
4.53
e9/l
—
9
110
5
76
0.64
0.37
1.2
3.1
0.20
0.21
g/l
—
5
69
5
75
0.65
0.37
2.2
4.1
—
—
—
0
0
6
46
1.33
0.34
2.7
2.3
—
—
—
0
0
7
96
0.71
0.33
3.1
2.2
356.14
392.73
nmol/l
—
7
88
27
235
1.21
0.30
1.8
2.5
2.89
2.71
mg/l
0.08
22
209
9
116
0.75
0.29
2.3
4.3
1.88
1.81
%
—
9
104
9
115
0.76
0.29
1.3
1.3
—
—
—
0
0
9
76
1.20
0.25
1.3
1.6
—
—
—
0
0
10
79
1.30
0.23
1.2
1.3
—
—
—
0
0
25
280
0.85
0.23
3.5
3.2
115.32
73.01
mg/l
0.29
11
179
0
11
0.00
0.21
0.0
1.0
—
—
—
0
0
0
11
0.00
0.21
0.0
1.0
—
—
—
0
0
0
11
0.00
0.21
0.0
1.2
—
—
—
0
0
0
10
0.00
0.21
0.0
3.5
—
—
—
0
0
0
10
0.00
0.21
0.0
2.0
—
639.80
—
0
5
0
10
0.00
0.21
0.0
1.4
—
—
—
0
0
0
10
0.00
0.21
0.0
1.1
—
—
—
0
0
0
10
0.00
0.21
0.0
1.1
—
—
—
0
0
0
12
0.00
0.21
0.0
4.5
—
—
—
0
0
0
12
0.00
0.21
0.0
2.3
—
89.45
—
0
12
0
13
0.00
0.21
0.0
2.2
—
—
—
0
0
0
13
0.00
0.21
0.0
1.5
—
1.17
—
0
13
26
233
1.16
0.21
1.3
1.4
—
—
—
0
0
0
14
0.00
0.20
0.0
11.9
—
10.07
—
0
14
21
186
1.17
0.19
4.0
6.0
—
—
—
0
0
30
279
1.11
0.13
2.5
5.1
7.40
7.40
ph
0.09
25
200
5
46
1.09
0.10
1.4
1.2
—
—
—
0
0
6
57
1.06
0.09
1.0
5.2
0.52
0.67
%
—
6
57
6
58
1.04
0.08
1.0
5.1
0.77
1.30
%
—
6
58
5
61
0.81
0.08
1.0
1.4
—
—
—
0
0
5
63
0.78
0.08
4.0
3.8
5.00
5.10
kpa
—
5
63
5
63
0.78
0.08
4.0
3.8
7.40
7.42
ph
—
5
48
7
66
1.07
0.08
1.0
1.3
—
—
—
0
0
6
70
0.85
0.08
1.3
1.4
—
—
—
0
0
35
365
0.93
0.07
4.3
3.7
6.02
6.17
ph
0.30
20
197
7
80
0.86
0.07
1.3
11.2
—
—
—
0
0
34
354
0.94
0.07
4.6
4.1
0.00
0.01
estimate
—
6
90
9
103
0.86
0.06
1.3
1.5
—
—
—
0
0
17
160
1.08
0.04
2.8
3.1
0.61
0.76
ug/l
—
9
102
23
220
1.06
0.04
3.6
2.9
5.09
5.72
e6/l
0.09
23
201
14
131
1.08
0.04
1.2
1.7
—
—
—
0
0
15
159
0.93
0.03
1.1
1.3
9.80
35.60
iu/ml
—
5
55
19
196
0.96
0.00
4.5
4.7
1.01
1.02
kg/l
1.06
13
132
29
292
0.99
0.00
3.9
3.9
13.38
11.84
mg/mmol
0.07
14
181
13
134
0.97
0.00
2.0
9.2
103.23
103.27
mmol/l
0.01
13
134
14
144
0.97
0.00
1.3
1.3
1.60
7.23
u/ml
—
5
51
0
7
0.00
0.00
0.0
1.3
—
—
—
0
0
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
0.00
0.0
1.3
—
—
—
0
0
0
7
0.00
0.00
0.0
1.9
—
—
—
0
0
7
72
0.97
0.00
1.1
2.9
—
—
—
0
0
0
6
0.00
0.00
0.0
1.3
—
—
—
0
0
0
7
0.00
0.00
0.0
3.9
—
0.71
—
0
7
0
6
0.00
0.00
0.0
11.2
—
0.62
—
0
6
0
5
0.00
-0.00
0.0
1.4
—
116.60
—
0
5
0
5
0.00
-0.00
0.0
1.4
—
13.62
—
0
5
0
5
0.00
-0.00
0.0
1.6
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.4
—
398.00
—
0
5
0
5
0.00
-0.00
0.0
1.8
—
—
—
0
0
0
9
0.00
-0.00
0.0
2.1
—
—
—
0
0
0
9
0.00
-0.00
0.0
2.0
—
—
—
0
0
0
8
0.00
-0.00
0.0
1.3
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.4
—
—
—
0
0
27
270
1.00
-0.00
4.7
3.5
0.00
0.00
estimate
—
6
87
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
8
0.00
-0.00
0.0
1.5
—
45.67
—
0
8
6
60
1.00
-0.00
1.3
7.1
24.85
24.43
mmol/l
—
6
60
11
110
1.00
-0.00
1.3
1.5
—
—
—
0
0

Mortality – FinRegistry

↥

Association

Association between endpoint AB1_OTHER_INFESTATIONS and mortality.

Females

No data

Males

No data

Mortality risk

Mortality risk for people of age

years, who have AB1_OTHER_INFESTATIONS.

N-year risk Females Males
1 No data No data
5 No data No data
10 No data No data
15 No data No data
20 No data No data

Relationships between endpoints

↥

Index endpoint: AB1_OTHER_INFESTATIONS – Other infestations

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
rg [CI]
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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