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This is a non-core endpoint: only basic statistics are computed.

See these related core endpoints for full statistics:

Chlamydia psittaci infection, including avohilmo

Endpoint Browser

AB1_CHLAMYDIA_PSITACCI_WIDE

Endpoint definition

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Report an error or suggest an improvement for this endpoint codes

Endpoint definition steps

FinnGen

Phenotype data

557745

1. Apply sex-specific rule

None

557745

2. Check conditions

None

557745

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Primary healthcare outpatient: ICD-10 — A70
  • Hospital discharge: ICD-10 — A70
  • Cause of death: ICD-10 — A70

3 out of 7 registries used, show all original rules.

11

4. Check minimum number of events

None

11

5. Include endpoints

None

11

6. Filter based on genotype QC (FinnGen only)

9

Control definitions (FinnGen only)

Control exclude
AB1_OTHER_CHLAMYDIAE

Extra metadata

Level in the ICD hierarchy
3
First used in FinnGen datafreeze
DF5

Case counts by codes

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FinnGen case counts by registry codes:

Not enough data for upset plot.

Full data table

Summary Statistics

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-FinRegistry-

This endpoint is excluded (different definition than used in FinnGen).

-FinnGen-

Key figures

All Female Male
Number of individuals 9 5 -
Unadjusted period prevalence (%) 0.00 0.00 -
Median age at first event (years) 52.13 46.03 -

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS

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CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

No data available

LabWAS

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OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
5
87
0.15
1.99
3.4
5.5
5.48
6.20
mmol/l
—
5
78
5
86
0.17
1.88
2.4
7.2
36.20
41.01
mmol/mol
—
5
80
0
34
0.00
1.53
0.0
3.8
—
13.66
—
0
23
0
31
0.00
1.23
0.0
3.2
—
64.43
—
0
22
5
29
2.43
0.55
2.4
2.2
—
—
—
0
0
5
70
0.43
0.55
4.4
4.9
—
—
—
0
0
0
15
0.00
0.45
0.0
1.7
—
—
—
0
0
0
15
0.00
0.45
0.0
2.1
—
29.00
—
0
15
0
10
0.00
0.23
0.0
1.7
—
—
—
0
0
0
12
0.00
0.22
0.0
4.5
—
7.38
—
0
6
0
12
0.00
0.22
0.0
1.3
—
—
—
0
0
0
13
0.00
0.22
0.0
2.6
—
5.93
—
0
7
0
5
0.00
0.00
0.0
4.0
—
15.38
—
0
5
0
5
0.00
0.00
0.0
1.0
—
37.00
—
0
5
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
0
5
0.00
0.00
0.0
1.2
—
17.84
—
0
5
0
5
0.00
0.00
0.0
2.2
—
0.82
—
0
5
0
5
0.00
0.00
0.0
3.4
—
138.20
—
0
5
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
0
5
0.00
0.00
0.0
3.2
—
0.72
—
0
5
0
6
0.00
-0.00
0.0
1.3
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.3
—
1335.87
—
0
6
0
6
0.00
-0.00
0.0
3.0
—
1.37
—
0
6
0
6
0.00
-0.00
0.0
2.0
—
—
—
0
0
0
8
0.00
-0.00
0.0
2.9
—
4.23
—
0
8
0
8
0.00
-0.00
0.0
3.1
—
5.69
—
0
8
0
7
0.00
-0.00
0.0
3.1
—
24.87
—
0
7
0
6
0.00
-0.00
0.0
1.5
—
—
—
0
0
0
9
0.00
-0.00
0.0
3.7
—
1.02
—
0
9
0
6
0.00
-0.00
0.0
1.3
—
—
—
0
0

Mortality – FinRegistry

↥

This endpoint is excluded (different definition than used in FinnGen).

Relationships between endpoints

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Index endpoint: AB1_CHLAMYDIA_PSITACCI_WIDE – Chlamydia psittaci infection, including avohilmo

GWS hits: -

This endpoint is excluded (different definition than used in FinnGen).