This is a non-core endpoint: only basic statistics are computed.
See these related core endpoints for full statistics:
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
557745 |
1. Apply sex-specific ruleNone |
557745 |
2. Check conditionsNone |
557745 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
2 out of 7 registries used, show all original rules. |
9 |
4. Check minimum number of eventsNone |
9 |
5. Include endpointsNone |
9 |
6. Filter based on genotype QC (FinnGen only) |
9 |
Control definitions (FinnGen only)
- Control exclude
- AB1_PROTOZOAL
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF5
Similar endpoints
↥List of similar endpoints to
Chagas' disease
based on the number of shared cases.
Similar with more cases:
- Chagas' disease, including avohilmo
- Protozoal diseases
- Protozoal diseases, including avohilmo
- Certain infectious and parasitic diseases
- Parasetamol
Similar with less cases:
Case counts by codes
↥FinnGen case counts by registry codes:
Not enough data for upset plot.
Not enough data for upset table.
Summary Statistics
↥-FinRegistry-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | |||
| Whole population | 77 | 33 | 43 |
| Only index persons | 58 | 29 | 29 |
| Unadjusted period prevalence (%) | |||
| Whole population | 0.00 | 0.00 | 0.00 |
| Only index persons | 0.00 | 0.00 | 0.00 |
| Median age at first event (years) | |||
| Whole population | 49.85 | 50.48 | 49.46 |
| Only index persons | 37.25 | 43.41 | 31.10 |
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 9 | 5 | - |
| Unadjusted period prevalence (%) | 0.00 | 0.00 | - |
| Median age at first event (years) | 51.05 | 55.25 | - |
-FinRegistry-
Age distribution of first events
-FinnGen-
Age distribution of first events
-FinRegistry-
Year distribution of first events
-FinnGen-
Year distribution of first events
-FinRegistry-
Cumulative Incidence Function
No data
-FinnGen-
Cumulative Incidence Function
Not a core endpoint, no data to show.
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
No data available
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
0
11
0.00
0.23
0.0
5.4
—
32.40
—
0
5
9
80
+∞
0.23
36.3
18.2
139.89
139.89
mmol/l
—
9
80
9
78
+∞
0.23
5.2
5.3
5.78
5.82
mmol/l
—
9
69
0
13
0.00
0.22
0.0
5.8
—
1.20
—
0
13
0
5
0.00
0.00
0.0
4.2
—
2.30
—
0
5
0
5
0.00
0.00
0.0
1.2
—
54.40
—
0
5
0
5
0.00
0.00
0.0
2.2
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.3
—
—
—
0
0
9
83
+∞
-0.00
34.9
21.0
110.11
87.73
umol/l
—
9
83
9
83
+∞
-0.00
6.0
6.6
2.61
2.63
mmol/l
—
9
74
Mortality – FinRegistry
↥Association
Association between endpoint AB1_CHAGA and mortality.
Females
No dataMales
No dataMortality risk
Mortality risk for people of age
years, who have AB1_CHAGA.| N-year risk | Females | Males |
|---|---|---|
| 1 | No data | No data |
| 5 | No data | No data |
| 10 | No data | No data |
| 15 | No data | No data |
| 20 | No data | No data |
Relationships between endpoints
↥Index endpoint: AB1_CHAGA – Chagas' disease
GWS hits: -
Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
rg [CI]
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
Loading data