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This is a non-core endpoint: only basic statistics are computed.

Granuloma inguinale, including avohilmo

Endpoint Browser

AB1_GRANULO_INGUINALE_WIDE

Endpoint definition

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Report an error or suggest an improvement for this endpoint codes

Endpoint definition steps

FinnGen

Phenotype data

557745

1. Apply sex-specific rule

None

557745

2. Check conditions

None

557745

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Primary healthcare outpatient: ICD-10 — A58
  • Hospital discharge: ICD-10 — A58
  • Hospital discharge: ICD-9 — 0992A
  • Hospital discharge: ICD-8 — 0992A
  • Cause of death: ICD-10 — A58
  • Cause of death: ICD-9 — 0992A
  • Cause of death: ICD-8 — 0992A

3 out of 7 registries used, show all original rules.

8

4. Check minimum number of events

None

8

5. Include endpoints

None

8

6. Filter based on genotype QC (FinnGen only)

8

Control definitions (FinnGen only)

Control exclude
AB1_SEXUAL_TRANSMISSION

Extra metadata

Level in the ICD hierarchy
3
First used in FinnGen datafreeze
DF5

Case counts by codes

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FinnGen case counts by registry codes:

Not enough data for upset plot.

Not enough data for upset table.

Summary Statistics

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-FinRegistry-

This endpoint is excluded (different definition than used in FinnGen).

-FinnGen-

Key figures

All Female Male
Number of individuals 8 - 5
Unadjusted period prevalence (%) 0.00 - 0.00
Median age at first event (years) 41.87 - 40.87

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS

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CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

No data available

LabWAS

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OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
0
33
0.00
1.64
0.0
2.1
—
1.23
—
0
27
0
22
0.00
0.71
0.0
12.4
—
—
—
0
0
0
14
0.00
0.46
0.0
1.9
—
—
—
0
0
0
11
0.00
0.23
0.0
2.1
—
—
—
0
0
0
11
0.00
0.23
0.0
7.8
—
4.91
—
0
11
0
10
0.00
0.23
0.0
1.8
—
13.60
—
0
10
0
10
0.00
0.23
0.0
4.6
—
—
—
0
0
0
13
0.00
0.22
0.0
2.2
—
—
—
0
0
0
13
0.00
0.22
0.0
1.2
—
—
—
0
0
0
5
0.00
0.00
0.0
4.2
—
5.36
—
0
5
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
0
5
0.00
0.00
0.0
4.2
—
4.54
—
0
5
0
5
0.00
0.00
0.0
10.0
—
—
—
0
0
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
-0.00
0.0
6.1
—
66.57
—
0
7
0
6
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
7
0.00
-0.00
0.0
9.4
—
67.20
—
0
7
0
7
0.00
-0.00
0.0
2.4
—
—
—
0
0
0
6
0.00
-0.00
0.0
6.5
—
36.97
—
0
6
0
7
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
6
0.00
-0.00
0.0
3.2
—
—
—
0
0
0
8
0.00
-0.00
0.0
2.1
—
—
—
0
0
0
8
0.00
-0.00
0.0
1.5
—
—
—
0
0
0
8
0.00
-0.00
0.0
5.5
—
25.56
—
0
8
0
8
0.00
-0.00
0.0
1.4
—
—
—
0
0

Mortality – FinRegistry

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This endpoint is excluded (different definition than used in FinnGen).

Relationships between endpoints

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Index endpoint: AB1_GRANULO_INGUINALE_WIDE – Granuloma inguinale, including avohilmo

GWS hits: -

This endpoint is excluded (different definition than used in FinnGen).